mRNA_H-paniculata_contig2447.6628.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2447.6628.1
Unique NamemRNA_H-paniculata_contig2447.6628.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A6H5L4G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G7_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 2.700e-105
Identity = 173/225 (76.89%), Postives = 197/225 (87.56%), Query Frame = 1 
Query:  169 SQLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFAAAELGADGSNGTARQDRDGEGVGETAQEVAERLNEERKSRVMQTGDYAGESTSGRRRWQQRRGRGKHGGGG-KRKPKKTGTRFDLPV 840
            S  QPAPLAFD+REIERFRYRVEDTLKKVTRV VREARAAELKAE++NS+KLAGYF+E+AGDLKVLRHDKSVLHPLR+L+HLKHIP+YLMPTGLQTGEDPT+RQ+KR+KR RGG KRR G G +QGRRKDNDPLQTF A+ELGADGS G   +DR         +E A+R+NEER+SRVMQTGD++GESTSGRRRWQQRRG+GKHGGGG K + KKT  RFD+PV
Sbjct:   56 SWAQPAPLAFDIREIERFRYRVEDTLKKVTRVRVREARAAELKAEIINSQKLAGYFKENAGDLKVLRHDKSVLHPLRKLDHLKHIPDYLMPTGLQTGEDPTQRQRKRMKRARGGAKRRQGQGLDQGRRKDNDPLQTFEASELGADGSYGDEEEDR---------KEAAKRMNEERESRVMQTGDFSGESTSGRRRWQQRRGKGKHGGGGNKGRSKKTANRFDMPV 271
[Close]
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 328 bits (841), Expect = 1.290e-99
Identity = 194/291 (66.67%), Postives = 219/291 (75.26%), Query Frame = 1 
Query:    1 QESQPALLAPSLDAVASGGGGGRNKRAGRESIVAAMGAQGAAEWGGVVGGQGYGGG----------SQLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFAAAELGADGSNGTARQDRDGEGVGETAQEVAERLNEERKSRVMQTGDYAGESTSGRRRWQQRRGRGKHGGGG-KRKPKKTGTRFDLPV 840
            Q SQP+L APSLD    GG           SIV AMG Q     GG V                  S  QPAPLAFD+REIERFRYRVEDTLKKVTRVSVREARAAELKAE++NS+KLAGYF+E+AGDLKVLRHDKSVLHPLR+L+HLKHIP+YLMP GLQTGEDPT+RQ+KR+KR RGG KRR G G +QGRRKDNDPLQTF A+ELGADGS G   + R         +E A+R+NEER+SRVMQTGD++GESTSGRRRWQQRRG+GKHGGGG K + KKT  RFD+PV
Sbjct:  545 QSSQPSLAAPSLD----GGXXXXXAPGSSGSIVTAMGPQA----GGAVXXXXXXXXXXXXXXXXXXSWAQPAPLAFDIREIERFRYRVEDTLKKVTRVSVREARAAELKAEIVNSQKLAGYFKENAGDLKVLRHDKSVLHPLRKLDHLKHIPDYLMPPGLQTGEDPTQRQRKRIKRARGGAKRRQGQGLDQGRRKDNDPLQTFEASELGADGSYGGEEEGR---------KEAAKRMNEERESRVMQTGDFSGESTSGRRRWQQRRGKGKHGGGGNKGRSKKTANRFDMPV 818
[Close]
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.720e-35
Identity = 76/110 (69.09%), Postives = 89/110 (80.91%), Query Frame = 1 
Query:  169 SQLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKR 498
            S+ QPAPLAFD+REIE+FRYRV D  KKVTRV VREARAAEL+ E++NS  L  +F+ H  DL+VLRHDK+ L+P  RL+HLKHIP YLMP GL TGEDPT+RQ KR KR
Sbjct:  475 SRAQPAPLAFDLREIEQFRYRVTDVAKKVTRVMVREARAAELRRELINSHALDAHFKSHPDDLRVLRHDKTALNPALRLDHLKHIPSYLMPAGLATGEDPTERQAKRKKR 584
[Close]
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A7S0XN96_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S0XN96_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.000e-33
Identity = 89/217 (41.01%), Postives = 127/217 (58.53%), Query Frame = 1 
Query:  145 GGQGYGGGSQLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFAA-----AELGADGSNGTARQDRDGEGVGETAQEVAERLNEERKSRVMQTGDYAGESTSGRRRWQQRRGRGK 780
            GG G     Q QP PL FD++EIE FRYRVED  + VT+V++RE RAAE+KAE+LNS++L  +F+E+  DL++L+HD+      +  +HLKH+P Y++P G+Q  E   KR+KK+ + QR    R      E+GR K NDPLQ F         +G DG +  A  D D    G    EV  +  + ++       D  G+ST+GR  W+Q+  +GK
Sbjct:  158 GGAGMHPQVQRQPCPLDFDLKEIEGFRYRVEDVARAVTKVAIRETRAAEVKAEILNSERLQAHFDENPADLQLLQHDRQATKISKVQDHLKHVPTYMLPRGMQVAEVSRKRRKKKTRSQRIAASR-----AERGRNKSNDPLQNFDGDVNMDGLVGDDGDDNEAEVDEDKFFEGVEEDEVVTKAEKNQQYLETMQDDGYGKSTAGRNAWKQKHNKGK 369
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BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A448YUD8_9STRA (Uncharacterized protein n=5 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YUD8_9STRA)

HSP 1 Score: 144 bits (364), Expect = 3.230e-33
Identity = 88/203 (43.35%), Postives = 128/203 (63.05%), Query Frame = 1 
Query:  172 QLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFAAAELGADGSNGTARQDRDGEGVGETAQEVAERLNEERKSRVMQTGDYAGESTSGRRRWQQRRGRGK 780
            Q QP+PL FD+REIE FRYRVED  + VT+ S++EARAAEL+AE+LNS++L  +FE++  DL++LRHD+   H  +  EHLKHIP+YL+P G+   +   KR+K++    RGG +RR+            DPLQ+F+  ++  DG  G   +  D   +GE  +   ++  EE K   M T D  G+STSGR  W+++  +GK
Sbjct:  473 QSQPSPLDFDLREIEGFRYRVEDVSRAVTKHSIKEARAAELRAEILNSERLQAHFEDNPNDLQLLRHDRLATHASKVQEHLKHIPKYLLPRGMHVADLNRKRKKRK---NRGGKQRRSAK----------DPLQSFSDGDVNLDGLEGDDFELPD---LGEEGRSEKKQKREEEKKTFMNTHDGTGKSTSGRNAWKEKHRKGK 659
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BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A4D9D2A0_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2A0_9STRA)

HSP 1 Score: 130 bits (328), Expect = 2.630e-30
Identity = 72/143 (50.35%), Postives = 96/143 (67.13%), Query Frame = 1 
Query:  154 GYGGGSQLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFA 582
            G  G  + QP PLAFD++E+E FRYRVED  + VTR++V+EAR AE+K E+LNS+ L  +F+E+  + ++LRHDK +L   R  EHLKH+P+YL+P G++ G DP    KK       G KR  G G +  RRK NDPLQ FA
Sbjct:  102 GATGALRTQPTPLAFDLKELEGFRYRVEDVRRAVTRMAVKEARLAEIKQELLNSQALKTHFQENPHEFQILRHDKGLLPSHRVQEHLKHVPDYLLPDGMRVGADPAA--KKXXXXXXAGRKRAVGQGADPQRRKGNDPLQHFA 242
[Close]
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A7S1XW79_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW79_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.390e-29
Identity = 94/246 (38.21%), Postives = 132/246 (53.66%), Query Frame = 1 
Query:  172 QLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPT-KRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFAAAELGADGSNGTARQDRDGEGVGETAQEVAERLNEERKSRVMQTGDYAGESTSGRRRWQQRRGRGKHGGGGKRKPKKTGTRFDLPV*CHYVLLGFFL-RGKRREMTTF 903
            Q QPAPL FD+ EI  FRYRV+D  + VT VS++EARAAELKAE+LN+ +L  YF+E+  DL++LRHDK+V+HP R  EHL+ +P YL+P G+  GEDP+ K+ +KRL        R+    +        DPL+++ A E      +G A+ D                       RV  +    G STS RR+W++R  +G+      +KPK      D      Y   G F  +GK ++M  F
Sbjct:  153 QRQPAPLPFDMNEIATFRYRVDDVKRSVTSVSIKEARAAELKAELLNNARLQAYFDENPQDLQLLRHDKAVMHPTRMQEHLRSVPGYLIPDGIDVGEDPSLKKYRKRL--------RKRDRDRRDAAMAAADPLRSYNAEEA----PDGKAKADE----------------------RVFSSTKRLGFSTSRRRKWKERHRKGEFA----KKPKDA----DAKNKGAYGPKGAFGGKGKSKKMQGF 356
[Close]
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A1Z5KBW1_FISSO (ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBW1_FISSO)

HSP 1 Score: 129 bits (324), Expect = 4.730e-28
Identity = 85/219 (38.81%), Postives = 128/219 (58.45%), Query Frame = 1 
Query:  178 QPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFAAAELGADGSNGTARQDRDGEGV-------GETAQEVAERLNEERKSRVMQTGDYAGESTSGRRRWQQRRGRGKHGGGGKRKPKK 813
            QP+PL FD+ E+E FRYRVED  + VT+ +VREARA ELK E+LNS++L  +F+E+  DL++LRHD+   +  + L+HLKH+P+YL+P G+Q      KR+KK++K           HG    RRKDNDPLQ+F     G D S+     D + + +       G   +E   +  + +      T D  G+ST+GR  W+Q+  +G+  G  ++  +K
Sbjct:  459 QPSPLDFDLAEVEGFRYRVEDVGRAVTKNTVREARANELKMELLNSERLESHFDENPADLQLLRHDRLATNVSKVLDHLKHVPKYLLPKGMQVANLNKKRKKKKVK-----------HGTGGERRKDNDPLQSF-----GGDKSSNDIDGDMEHDPLVAEFMDDGTDDEEGPSKKQKTQSEIFANTRDGTGQSTAGRNAWKQKHKKGQFSGKKRKSERK 661
[Close]
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: K0QZR5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZR5_THAOC)

HSP 1 Score: 129 bits (323), Expect = 7.060e-28
Identity = 89/216 (41.20%), Postives = 127/216 (58.80%), Query Frame = 1 
Query:  172 QLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRKDNDPLQTFAA---------AELGADGSNGTARQDR---DGEGVGETAQEVAERLNEERKSRVMQTGDYAGESTSGRRRWQQRRGRGKH 783
            Q QP PL FD++EIE FRYRVED  + VTRV+V+E RAAE+KAE+LNS++L  +FE +  DL++L+HD+   H  +   HLK++P YL+P G+Q      KR+KK  + Q     +R   G++  R K NDPLQTF            E    G +G   +DR   D +G G+      E   EE+ +  ++   Y GESTSGR +W++   +GK+
Sbjct:  482 QAQPGPLEFDLKEIEGFRYRVEDVNRAVTRVAVKETRAAEVKAEILNSERLQAHFEANPADLQLLQHDRQATHVSKVQSHLKNVPGYLLPRGMQVANVSRKRRKKXTRSQ-----QRAAAGRQ--RNKSNDPLQTFDGDVAVDGLIDVEDEEGGESGGLDEDRFFDDDDGEGD------EMTKEEKNAAYLEDNAY-GESTSGRDKWKRAHRKGKY 683
[Close]
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Match: A0A7R9UC43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC43_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.930e-27
Identity = 59/102 (57.84%), Postives = 81/102 (79.41%), Query Frame = 1 
Query:  172 QLQPAPLAFDVREIERFRYRVEDTLKKVTRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRLEHLKHIPEYLMPTGLQTGEDPTKR 477
            Q QP+ L FDV+EI  FRYRVED  + VT ++++EARAAELK EMLN+ +L  YFEE+  DL++LRHDK++LHP R  +HLKH+P+YL+P G++ G DP++R
Sbjct:  562 QKQPSALPFDVKEIATFRYRVEDVKRSVTAIAIKEARAAELKQEMLNNARLQNYFEENPQDLQLLRHDKTILHPTRVQDHLKHVPDYLIPDGIEVGADPSQR 663
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2447.6628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4G7_9PHAE2.700e-10576.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNE7_ECTSI1.290e-9966.67DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835ZDE1_9STRA6.720e-3569.09DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A7S0XN96_9STRA3.000e-3341.01Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A448YUD8_9STRA3.230e-3343.35Uncharacterized protein n=5 Tax=Pseudo-nitzschia T... [more]
A0A4D9D2A0_9STRA2.630e-3050.35Helicase C-terminal domain-containing protein n=1 ... [more]
A0A7S1XW79_9STRA4.390e-2938.21Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1Z5KBW1_FISSO4.730e-2838.81ATP-dependent RNA helicase DDX56/DBP9 n=2 Tax=Fist... [more]
K0QZR5_THAOC7.060e-2841.20Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7R9UC43_9STRA1.930e-2757.84Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2447contigH-paniculata_contig2447:837..5418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue4.4e-87
Seed eggNOG ortholog2880.D7FNE7
Preferred nameDDX56
KEGG koko:K14810
Hectar predicted targeting categoryother localisation
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0346@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-22_001460.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons5
Model size1616
Cds size738
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.1764536-UTR-H-paniculata_contig2447:836..9411622929708.1764536-UTR-H-paniculata_contig2447:836..941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2447 837..941 +
1691480976.3460338-UTR-H-paniculata_contig2447:836..9411691480976.3460338-UTR-H-paniculata_contig2447:836..941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2447 837..941 +
1622929708.2741528-UTR-H-paniculata_contig2447:4645..54181622929708.2741528-UTR-H-paniculata_contig2447:4645..5418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2447 4646..5418 +
1691480976.409093-UTR-H-paniculata_contig2447:4645..54181691480976.409093-UTR-H-paniculata_contig2447:4645..5418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2447 4646..5418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.19498-CDS-H-paniculata_contig2447:941..10881622929708.19498-CDS-H-paniculata_contig2447:941..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 942..1088 +
1691480976.3568225-CDS-H-paniculata_contig2447:941..10881691480976.3568225-CDS-H-paniculata_contig2447:941..1088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 942..1088 +
1622929708.2102554-CDS-H-paniculata_contig2447:2165..22621622929708.2102554-CDS-H-paniculata_contig2447:2165..2262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 2166..2262 +
1691480976.3648925-CDS-H-paniculata_contig2447:2165..22621691480976.3648925-CDS-H-paniculata_contig2447:2165..2262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 2166..2262 +
1622929708.2263365-CDS-H-paniculata_contig2447:2595..27201622929708.2263365-CDS-H-paniculata_contig2447:2595..2720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 2596..2720 +
1691480976.3731408-CDS-H-paniculata_contig2447:2595..27201691480976.3731408-CDS-H-paniculata_contig2447:2595..2720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 2596..2720 +
1622929708.242646-CDS-H-paniculata_contig2447:3530..37671622929708.242646-CDS-H-paniculata_contig2447:3530..3767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 3531..3767 +
1691480976.3814075-CDS-H-paniculata_contig2447:3530..37671691480976.3814075-CDS-H-paniculata_contig2447:3530..3767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 3531..3767 +
1622929708.258577-CDS-H-paniculata_contig2447:4513..46451622929708.258577-CDS-H-paniculata_contig2447:4513..4645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 4514..4645 +
1691480976.3936388-CDS-H-paniculata_contig2447:4513..46451691480976.3936388-CDS-H-paniculata_contig2447:4513..4645Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2447 4514..4645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2447.6628.1prot_H-paniculata_contig2447.6628.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2447 942..4645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2447.6628.1

>prot_H-paniculata_contig2447.6628.1 ID=prot_H-paniculata_contig2447.6628.1|Name=mRNA_H-paniculata_contig2447.6628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
MGAQGAAEWGGVVGGQGYGGGSQLQPAPLAFDVREIERFRYRVEDTLKKV
TRVSVREARAAELKAEMLNSKKLAGYFEEHAGDLKVLRHDKSVLHPLRRL
EHLKHIPEYLMPTGLQTGEDPTKRQKKRLKRQRGGVKRRTGHGQEQGRRK
DNDPLQTFAAAELGADGSNGTARQDRDGEGVGETAQEVAERLNEERKSRV
MQTGDYAGESTSGRRRWQQRRGRGKHGGGGKRKPKKTGTRFDLPV*
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mRNA from alignment at H-paniculata_contig2447:837..5418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2447.6628.1 ID=mRNA_H-paniculata_contig2447.6628.1|Name=mRNA_H-paniculata_contig2447.6628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4582bp|location=Sequence derived from alignment at H-paniculata_contig2447:837..5418+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGTCACAACCGGCGCTTCTCGCTCCTTCCCTCGACGCGGTAGCCAG
CGGCGGCGGCGGCGGTCGAAACAAAAGAGCCGGGCGCGAGTCGATTGTGG
CCGCCATGGGCGCGCAGGGCGCGGCCGAGTGGGGAGGGGTTGTGGGCGGG
CAGGGCTACGGTGGGGGGTCCCAGCTGCAGCCGGCACCGTTGGCGTTCGA
TGTCCGGGAGATCGAGAGGTTTAGGTACAGGGTGGAGGACACCCTGAAAA
AGGTGAATGTTGTTGTTTCCCGCCTACTACGTAGTTACGGTGCGACTCTT
GCCGTCATTCCCCGTGTCAAGATAATCAATGTACATACATACCGTCATGG
ACGGTATTGTCGCACCCCCTTGTACACACCCGTCGCGGAATATTGAAGTA
GTATGATCATGGCTCTGCGCAAACCGATGCGCATCGATCGGTCCGCAGCG
GTCACATTTGACGTTTTCTCCAAGCTGTGCTGGGTGAGATATCGCTGGTG
TCAACCGTTGAGTCGACCCACGCGCGCACAGTGCTCATCGTGGGCAACAA
TGCTAACACCAAAGACCGAGTTGGTATGCCTTGGTCGCGTATGCACCGCG
GTAATATTCGTGGACTCTGTCAGTGCTGTCTTGAGCATGGTGGATGGTGT
CCCCCAAGATTCAGAGGTACACGATTGGTTAATGCGTGTAGATACACATT
GATATAGATGGGAAATAGTGGCGTTTCACTGGTTCTTGCGCATCAGGATC
TGTGACGCTATATAAAATGTTCGCACCCATGCCTCTATCCTCTGACCCCG
GATCTGGGAAACTGTACTGAAGTGTAGAGAAATATAATAAAACACAGTTT
TTGCCTTCATGCTGATCAATCAATGCACAGGTCGGACGAGCACATGCTCG
TCTTAACGAGCAACTCGTAGGGGTCATCTAGAAAACCGACGAATAGACAG
TATGTTTGTTGGGTTTATCAAAGAGAGGCGAGCACAGACACAATAGCGAC
GCCCTCGTGATTCCTGCTTAATTTCACCGGAATAGTTTCCGGGGAAGATT
TCTTGTCAGGCGTGTGCTCTTCGGTTTTCGAGATGACCCCCCACGAGTTG
CTCGTTGAGACGAGAATATGCTCGTTCGACCTGTGGCTGATTGAACAGAG
GAGGGTCCTGTTTGAAAGCCGTTGGATTTTGTTTGACTGTTACGTGACTA
CTTAGTTATAGACATCACAAAATCTGGTTTCCGAGGCGACAATCCGGCGT
CAGTGAGGATGGCTTTGGTTGGCCTGCTTACTTGTTTATTTGTTTGCTTG
CTTCCTTGTTCATCGTTTGGCTTGTGCAGGTGACGCGAGTAAGCGTGAGA
GAGGCAAGAGCAGCAGAACTCAAGGCGGAGATGCTTAATTCCAAGAAGCT
CGCCGGTTACTTTGAAGAGCACGCCGGTGAGTGTTGCATGTTATTGTTGT
TACCATTGTTGTTACCGTTGTGGTGTGTGTGTTGTCAACAACAGACAGGG
TAGCGATTAATCACCAAGATATAATTTTGGTTCAAACGGAAAGTACAAGA
GTCTGCCTAGAAATACAGAGCAATCACCCACCTTGTGCTTTTATTCAAGT
CCTGCTCTACTTATTCAAACTCCCGACATGATCTTCTCACTCTTTTGATG
GACAGGGGCTTTCAGCTAAACATGCCTGCTAATTCCCTGCACCCCCCCCC
GCCCCCAATCTCCCCCCATACGCATATAATGCCTCTTGATGGATATACAT
GGCATGCAGGCGACTTGAAGGTTCTGCGGCATGACAAGTCCGTGCTGCAC
CCGCTTCGCAGGCTGGAGCACCTGAAGCACATCCCGGAGTACCTCATGCC
GACCGGCCTTCAGACTGGAGAGGACCCCACCAAGGTACAAGCTCTTTTTT
TTGTTTTTGTTTTTGTAATCATTTGGTGGGTTTGAGTTTTGTGCACGCAC
AGTTATGCATTTGAAACATGGTTTGCGTTTATCTCGAAATTGTTGCTTAG
CGCTCCCAAAAAATGACCGTCTGTCCCCTTATCTAAAAAATCACCATGAG
CTCCCCCCCCCCCCCCATCTTCATGTGCCACATGGTATAGTGTCTAGTAT
TCTTGATGGGTTAGTATGATGGCGAGCCATGCTATCACCCTTTGATCTGT
TGTGATATTTTTGGACCTTTATTGCTAGAGTGGAGCGAATCCTCTCTTAG
TTGCGAGGATATGGAGATGTGGACCACGAGTGAGTATATCACGAATACTC
TAGTGAAGTCTCATTCAACCTTTTGGAATTTATTCCGATTCCCCCCCACA
ATGCTCGAGGTACGTTCTTGATGTGTACCGTGAATTGGGTACTCACTCCT
CATGCCTTTTCTGTTGTACTGACGGTCCATGTCACACCCAAAGCGCATTA
CCAGAGTGCTCGTGTTCAAGGTGTGTATCCCCTTCCTCCCGCATAAACAA
ACATTTATCAGCAAAATATCATTATTGAGGGGACTATAATAAAAGTCTCA
GGGTGACCTCACAGGAACTGTACGCACAAACTAGTACGTCTTCCTTCCCG
CTTGTTATTTCGGACTTTCCTGGACTAAACTCAACTCATTGCGGATCTGA
GAAGAGGTTGGACCGATGACGCCCTCGTGCCTCGCGCTCTTCCCAATCCG
TCTCCTGACCGTTCCCCATACTATCGGGGTTTTTTCCCCCTTAGCGTCAA
AAGAAGCGGCTGAAGCGCCAACGGGGTGGCGTTAAGCGTCGCACCGGGCA
CGGGCAAGAGCAGGGGAGACGCAAGGACAATGACCCTCTTCAGACCTTCG
CGGCGGCGGAGCTGGGTGCGGACGGGAGCAATGGGACAGCGAGACAAGAC
CGGGATGGGGAGGGTGTTGGGGAGACGGCTCAGGAGGTGGCGGAGAGACT
GAACGAGGAACGGAAATCCAGAGTCATGCAGGTACGGGGGGGGGTTGTAT
GGCAACCATTTTGGTTTGTCGTTTTACAGGAGGGAGTGAGCTGTTGAACA
TGGCCATGGAGGTCACGGTTGCGTACACATCGTATCGTAATCGGTCTGAA
TACCAGATGGCAGGTAAAGGGCTTTTCGTACATGCATACAAGCTGAGCGC
GAATTAATTGTCTTGATTTCTTTTTTTTTGCATGTGAGTGAAAACCGTTT
GTATTTTTTCATACATGGATATTTGTAGCGGAGGTTCGACAGAGGGGCCG
CCCTTCCTGGTTTCAAGACATGGTGTTTAGTCGAGAAGAGGAAGCGACGC
AAGCTACGCGCGCATACGTCGGGTTGTCTCTGTAGTCATTGGCATGTAAT
ACATGAACATCTCGGTTGACCACGCAACACCATTAAACCTCTTGAATGTG
AGTCTTCGGTGTATGTGTTCTATTTACAGTATGCGTTTCCAAACTCATTC
GCTTCATCCGCTCGTTTTGCTCAGTTGGACTACCTCCCCCCCCCCCCAAA
ATAAAAATAAATAAAAGGGAGAGCATTGGGAAGTAATGACCAGAGCTTTG
GACCAAGCTTAAGTTCAACCTTTAAAGTCGTGAGACTTTTAAAAAGAGGA
ACCCGAACGTCTTTATTCATCCTCGTAACCCCGGTCCACTTAAGGTTTAC
ATGTTTTCGAGAAGCAACAAATGTACCCATGAACGCGCGAGTTTCTTTGA
ATCCCTTTTAATGTTTTTGTGTGACAGACGGGTGATTACGCTGGGGAGAG
TACTTCCGGCCGCCGAAGGTGGCAGCAGCGTCGCGGGAGGGGCAAGCATG
GTGGCGGCGGAAAGCGAAAACCCAAGAAGACCGGCACCCGATTCGATCTA
CCGGTCTGATGCCATTATGTTCTACTGGGTTTTTTTTTGCGGGGGAAAAG
GCGGGAGATGACTACCTTTAGTACACTTTAGAAGGTGAAAGATTTCGCGA
CGACACCCACTTATTTTAGGTAGTTTTAGGCATGTTTGGGAGATAAAACC
AACTCGTAGAACACTTGGAAGGCTTTCGCGACAACGATACTTTCTATAGG
GTATCGAGCATGTTTGAATCGAACTTCGTGCTTCCATGACGTTTTGGCCG
AATGTGTAGGGGATATAGCCAGGTGGAATGCCTGACAGGGGGGTTCTCTG
TAGTGCTGGGTGTATGTGTTTGCCTATGGCCCATCTGTCAGTGTACAGTC
AAGGAAAAATGTGTCCCTCGTGGAGTCGTGTGCAGGGAAGCATCTTTTGC
GTTGGAGGGGTGATCTAGTCTCGGTTTTCTTGTTTCAAGGTGTGATATGT
CACGCCCAGCGAGCATCAATATGGTCATTTGAGGGAGGGCCGTTGTTCGT
TTTCGTCTATTGTAATGGTAACACGATGCAATCTTTTACTCAGGACCCAG
GTTCGACGGTACTGTTGAGCGTTGTAACTCAGTTTATTATGCGGCAAACC
TTGGAGGGGATATTGCTGTGTGGTGCTTCACTCTACTCTGGTAAATAAAA
TGTCGTGAGATATTTACCATATTCCGTGAGGATGCTAAGCGACTGTCAAT
ACGGGAGGAATCCATACGTGTTACACCAAGTGCAAGGGTTTATGACAAGA
ACGAACAATGAGTGTTCTCTCTCAAAAGGAAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2447:837..5418+

>mRNA_H-paniculata_contig2447.6628.1 ID=mRNA_H-paniculata_contig2447.6628.1|Name=mRNA_H-paniculata_contig2447.6628.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig2447:837..5418+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGCGCAGGGCGCGGCCGAGTGGGGAGGGGTTGTGGGCGGGCAGGG
CTACGGTGGGGGGTCCCAGCTGCAGCCGGCACCGTTGGCGTTCGATGTCC
GGGAGATCGAGAGGTTTAGGTACAGGGTGGAGGACACCCTGAAAAAGATG
GGCGCGCAGGGCGCGGCCGAGTGGGGAGGGGTTGTGGGCGGGCAGGGCTA
CGGTGGGGGGTCCCAGCTGCAGCCGGCACCGTTGGCGTTCGATGTCCGGG
AGATCGAGAGGTTTAGGTACAGGGTGGAGGACACCCTGAAAAAGGTGACG
CGAGTAAGCGTGAGAGAGGCAAGAGCAGCAGAACTCAAGGCGGAGATGCT
TAATTCCAAGAAGCTCGCCGGTTACTTTGAAGAGCACGCCGGTGACGCGA
GTAAGCGTGAGAGAGGCAAGAGCAGCAGAACTCAAGGCGGAGATGCTTAA
TTCCAAGAAGCTCGCCGGTTACTTTGAAGAGCACGCCGGCGACTTGAAGG
TTCTGCGGCATGACAAGTCCGTGCTGCACCCGCTTCGCAGGCTGGAGCAC
CTGAAGCACATCCCGGAGTACCTCATGCCGACCGGCCTTCAGACTGGAGA
GGACCCCACCAAGGCGACTTGAAGGTTCTGCGGCATGACAAGTCCGTGCT
GCACCCGCTTCGCAGGCTGGAGCACCTGAAGCACATCCCGGAGTACCTCA
TGCCGACCGGCCTTCAGACTGGAGAGGACCCCACCAAGCGTCAAAAGAAG
CGGCTGAAGCGCCAACGGGGTGGCGTTAAGCGTCGCACCGGGCACGGGCA
AGAGCAGGGGAGACGCAAGGACAATGACCCTCTTCAGACCTTCGCGGCGG
CGGAGCTGGGTGCGGACGGGAGCAATGGGACAGCGAGACAAGACCGGGAT
GGGGAGGGTGTTGGGGAGACGGCTCAGGAGGTGGCGGAGAGACTGAACGA
GGAACGGAAATCCAGAGTCATGCAGCGTCAAAAGAAGCGGCTGAAGCGCC
AACGGGGTGGCGTTAAGCGTCGCACCGGGCACGGGCAAGAGCAGGGGAGA
CGCAAGGACAATGACCCTCTTCAGACCTTCGCGGCGGCGGAGCTGGGTGC
GGACGGGAGCAATGGGACAGCGAGACAAGACCGGGATGGGGAGGGTGTTG
GGGAGACGGCTCAGGAGGTGGCGGAGAGACTGAACGAGGAACGGAAATCC
AGAGTCATGCAGACGGGTGATTACGCTGGGGAGAGTACTTCCGGCCGCCG
AAGGTGGCAGCAGCGTCGCGGGAGGGGCAAGCATGGTGGCGGCGGAAAGC
GAAAACCCAAGAAGACCGGCACCCGATTCGATCTACCGGTCTGAACGGGT
GATTACGCTGGGGAGAGTACTTCCGGCCGCCGAAGGTGGCAGCAGCGTCG
CGGGAGGGGCAAGCATGGTGGCGGCGGAAAGCGAAAACCCAAGAAGACCG
GCACCCGATTCGATCTACCGGTCTGA
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