mRNA_H-paniculata_contig24467.6627.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24467.6627.1
Unique NamemRNA_H-paniculata_contig24467.6627.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: D8LPT9_ECTSI (Histone acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT9_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.820e-53
Identity = 81/91 (89.01%), Postives = 84/91 (92.31%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVKVQQHVHPLKPIPV 300
            +VLDTRQTFLNLCQGNHYQFD+LRR KHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGD+YHCE CTDFDLCKEC K   H HPLKPIPV
Sbjct: 1138 EVLDTRQTFLNLCQGNHYQFDMLRRGKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDRYHCEVCTDFDLCKECYKAVPHPHPLKPIPV 1228          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A835Z331_9STRA (Histone acetyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z331_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.650e-35
Identity = 59/91 (64.84%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVKVQQHVHPLKPIPV 300
            ++ DTRQ FLNLCQGNHYQFD LRR+KHSSMMVLYHL  PD PKFLSTCS C +EI +G++Y C  C +F+LC EC     H H L+ IPV
Sbjct:  441 EIFDTRQAFLNLCQGNHYQFDQLRRSKHSSMMVLYHLSTPDAPKFLSTCSLCQREIVAGNRYQCTVCENFELCSECAPTAGHPHRLRAIPV 531          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A7S2KCF1_9STRA (Histone acetyltransferase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KCF1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.470e-35
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVK---VQQHVHPLKPIPV 300
            + L+ RQ FLNLCQGNHYQFD LRRAKH+SMMVL+HL N D PKF+  C+ C +EI  G +YHC TC DFD+C EC +   + +H HPL+ IPV
Sbjct:   38 EFLNNRQLFLNLCQGNHYQFDSLRRAKHTSMMVLWHLHNRDAPKFVQQCALCSREILQGMRYHCPTCADFDMCNECRRNPNIPRHPHPLQAIPV 131          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A7S3XQZ4_HETAK (Histone acetyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQZ4_HETAK)

HSP 1 Score: 129 bits (324), Expect = 1.750e-34
Identity = 59/93 (63.44%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVKVQ--QHVHPLKPIPV 300
            + LDTRQ FLNLCQGNHYQFD LRRAKHSS MVL+HL +PD P+FL +CSNC  EI  G +YHCETC D+ LC+ C      QH H L+  PV
Sbjct:   79 EALDTRQAFLNLCQGNHYQFDRLRRAKHSSAMVLFHLHHPDAPRFLESCSNCTNEIFQGSQYHCETCQDYFLCEACHGKMGTQHPHALRRRPV 171          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A1Z5JQN1_FISSO (Histone acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQN1_FISSO)

HSP 1 Score: 134 bits (337), Expect = 1.950e-34
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   19 LTWQVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECV---KVQQHVHPLKPIPV 300
            L  + L+ RQ FLNLCQGNHYQFD +RRAKHSSMMVL+HL N D PKF+  C+ C +EI +G +YHC TC DFD C ECV   K+ +H HPLKPI V
Sbjct: 1333 LDCEFLNNRQAFLNLCQGNHYQFDTIRRAKHSSMMVLWHLHNRDAPKFVQQCATCSREILTGVRYHCPTCADFDQCHECVSNSKMPRHPHPLKPIAV 1429          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: B8LBW8_THAPS (Histone acetyltransferase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBW8_THAPS)

HSP 1 Score: 131 bits (330), Expect = 1.510e-33
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVK---VQQHVHPLKPIPV 300
            + L+ RQ FLNLCQGNHYQFD LRRAKH+SMMVL+HL N D PKF+  C+ C +EI  G++YHC TC D+D+C+EC+    V +H HPLK IPV
Sbjct:  514 EFLNNRQLFLNLCQGNHYQFDQLRRAKHTSMMVLWHLHNRDAPKFVQQCAVCSREILQGNRYHCPTCADYDMCQECMTNPGVPRHQHPLKAIPV 607          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A7S4MZ99_9STRA (Histone acetyltransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MZ99_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.400e-33
Identity = 58/94 (61.70%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVK---VQQHVHPLKPIPV 300
            + L+ RQ FLNLCQGNHYQ+D LRRAKHSSMMVL+HL N D PKF+  C+ C +EI +G +YHC TC D+D C ECV      +H H LKPIPV
Sbjct:  210 EFLNNRQAFLNLCQGNHYQYDQLRRAKHSSMMVLWHLHNRDAPKFVQQCAVCSREILTGYRYHCPTCADYDQCHECVSNPNTPRHPHQLKPIPV 303          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A7S2FSK6_9STRA (Histone acetyltransferase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FSK6_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.650e-33
Identity = 58/93 (62.37%), Postives = 67/93 (72.04%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVKV--QQHVHPLKPIPV 300
            +  DTRQ FLNLCQGNHYQFD LRRAKH+SMM LYH+ NPD+PKFL  CS C  EI++G +Y C TCTDF LC +C      QH H LK + V
Sbjct:  108 EFFDTRQQFLNLCQGNHYQFDSLRRAKHTSMMALYHIHNPDMPKFLQQCSQCGLEINAGYRYDCPTCTDFHLCGDCCHQFGSQHPHKLKRVAV 200          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A2R6WNA9_MARPO (Histone acetyltransferase n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WNA9_MARPO)

HSP 1 Score: 129 bits (324), Expect = 1.110e-32
Identity = 55/90 (61.11%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVKVQQHVHPLKPIP 297
            +  DTRQ FL+LCQGNHYQ+D LRRAKHSSMMVLYHL NP  P F+ TC+ C+++I +G  + CETC DFDLC  C  V +H H L P P
Sbjct: 1646 EFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVITCNQCHRDIETGQGWRCETCPDFDLCNNCKDVVKHNHKLTPHP 1735          
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Match: A0A7S2R3Z8_9STRA (Histone acetyltransferase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R3Z8_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.510e-32
Identity = 57/94 (60.64%), Postives = 70/94 (74.47%), Query Frame = 1
Query:   28 QVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPDVPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVK---VQQHVHPLKPIPV 300
            + L+ RQ FLNLCQGNHYQFD+LRRAKHSSMMVL+HL N D PKF+  C+ C +EI +G +YHC TC D+D+C EC+      +H H LK IPV
Sbjct: 1296 EFLNNRQAFLNLCQGNHYQFDMLRRAKHSSMMVLWHLHNRDAPKFVQQCAVCSREILTGHRYHCLTCADYDICSECLSNPNTPRHPHQLKQIPV 1389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24467.6627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT9_ECTSI4.820e-5389.01Histone acetyltransferase n=1 Tax=Ectocarpus silic... [more]
A0A835Z331_9STRA1.650e-3564.84Histone acetyltransferase n=1 Tax=Tribonema minus ... [more]
A0A7S2KCF1_9STRA8.470e-3560.64Histone acetyltransferase n=1 Tax=Skeletonema mari... [more]
A0A7S3XQZ4_HETAK1.750e-3463.44Histone acetyltransferase n=1 Tax=Heterosigma akas... [more]
A0A1Z5JQN1_FISSO1.950e-3462.89Histone acetyltransferase n=2 Tax=Fistulifera sola... [more]
B8LBW8_THAPS1.510e-3361.70Histone acetyltransferase (Fragment) n=1 Tax=Thala... [more]
A0A7S4MZ99_9STRA2.400e-3361.70Histone acetyltransferase n=1 Tax=Odontella aurita... [more]
A0A7S2FSK6_9STRA2.650e-3362.37Histone acetyltransferase n=1 Tax=Florenciella par... [more]
A0A2R6WNA9_MARPO1.110e-3261.11Histone acetyltransferase n=3 Tax=Marchantia polym... [more]
A0A7S2R3Z8_9STRA1.510e-3260.64Histone acetyltransferase n=1 Tax=Eucampia antarct... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24467contigH-paniculata_contig24467:2445..3288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.0
Seed ortholog evalue8.4e-45
Seed eggNOG ortholog2880.D8LPT9
KEGG koko:K04498
KEGG Pathwayko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04720,ko04916,ko04919,ko04922,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04720,map04916,map04919,map04922,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
Hectar predicted targeting categoryother localisation
EggNOG free text desc.histone acetyltransferase activity
EggNOG OGsCOG5076@1,KOG1778@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03029,ko03036
Exons2
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929708.1139092-CDS-H-paniculata_contig24467:2444..24951622929708.1139092-CDS-H-paniculata_contig24467:2444..2495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24467 2445..2495 -
1691480976.3193486-CDS-H-paniculata_contig24467:2444..24951691480976.3193486-CDS-H-paniculata_contig24467:2444..2495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24467 2445..2495 -
1622929708.127537-CDS-H-paniculata_contig24467:3039..32881622929708.127537-CDS-H-paniculata_contig24467:3039..3288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24467 3040..3288 -
1691480976.3327436-CDS-H-paniculata_contig24467:3039..32881691480976.3327436-CDS-H-paniculata_contig24467:3039..3288Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24467 3040..3288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24467.6627.1prot_H-paniculata_contig24467.6627.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24467 2445..3288 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24467.6627.1

>prot_H-paniculata_contig24467.6627.1 ID=prot_H-paniculata_contig24467.6627.1|Name=mRNA_H-paniculata_contig24467.6627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
MCALCCLTWQVLDTRQTFLNLCQGNHYQFDLLRRAKHSSMMVLYHLCNPD
VPKFLSTCSNCYKEIHSGDKYHCETCTDFDLCKECVKVQQHVHPLKPIPV
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mRNA from alignment at H-paniculata_contig24467:2445..3288-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24467.6627.1 ID=mRNA_H-paniculata_contig24467.6627.1|Name=mRNA_H-paniculata_contig24467.6627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=844bp|location=Sequence derived from alignment at H-paniculata_contig24467:2445..3288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCTCTCTGCTGCTTGACTTGGCAGGTGCTGGACACCCGGCAGAC TTTTCTCAACCTGTGCCAGGGAAACCACTACCAGTTCGACCTGCTACGAC GGGCGAAGCACTCGTCGATGATGGTGCTGTACCACCTTTGCAACCCCGAT GTGCCTAAGTTCCTGTCGACGTGCTCCAACTGCTACAAGGAGATTCACTC AGGAGACAAGTACCATTGCGAAACGTGCACTGACTTCGATTTGTGCAAGG TATACTTGGATAACATATACACCGACCGACCCGATTGATTTAACAAGAAA TCAGGAGCTAAATCAGAGTTGCTCGGGCCTAGAGAAGATTTCAGAAATTT TGGTAAGGCTTTTCTGTTTTCATAAGATTTTTTTCTAGTCTTGATATTAT GTGTCCCTTTGTTTTGTCTTTTCGGGCGAGTCCACCTCGTGACTTGATAA CTATAAAGATTGCACATATCGGACCTATCAATATCGGTATGAGTCGGATC GTAGCGGATTAGCTGTGTGGACAAACATGTTTTCAAATGACCCCCTTCGT TGATGTAAATTTTCTGATTAAGTAAGTGTACACAACTGATTTTTGAGTTA TTATTAGCTCCATAGCCTCTATATGAGTACAATCGAGTTATTTCATTAGC GTTATATGTCTACCAACTGCGGCACGTGAATAGGAAGGTTTTGTTGCCTC CCTTTCCTTTCCCGTTGTCGTGTTTTTGGTTTGTCTCGTTGATCTGAAAT GCGTTCATCCTTGCTGTTGCTGTTGTTGTTGTTGCTGCTACAGGAGTGCG TCAAGGTGCAGCAGCACGTCCACCCTCTCAAGCCTATCCCCGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig24467:2445..3288-

>mRNA_H-paniculata_contig24467.6627.1 ID=mRNA_H-paniculata_contig24467.6627.1|Name=mRNA_H-paniculata_contig24467.6627.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig24467:2445..3288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGTGCTCTCTGCTGCTTGACTTGGCAGGTGCTGGACACCCGGCAGAC
TTTTCTCAACCTGTGCCAGGGAAACCACTACCAGTTCGACCTGCTACGAC
GGGCGAAGCACTCGTCGATGATGGTGCTGTACCACCTTTGCAACCCCGAT
GTGCCTAAGTTCCTGTCGACGTGCTCCAACTGCTACAAGGAGATTCACTC
AGGAGACAAGTACCATTGCGAAACGTGCACTGACTTCGATTTGTGCAAGA
TGTGTGCTCTCTGCTGCTTGACTTGGCAGGTGCTGGACACCCGGCAGACT
TTTCTCAACCTGTGCCAGGGAAACCACTACCAGTTCGACCTGCTACGACG
GGCGAAGCACTCGTCGATGATGGTGCTGTACCACCTTTGCAACCCCGATG
TGCCTAAGTTCCTGTCGACGTGCTCCAACTGCTACAAGGAGATTCACTCA
GGAGACAAGTACCATTGCGAAACGTGCACTGACTTCGATTTGTGCAAGGA
GTGCGTCAAGGTGCAGCAGCACGTCCACCCTCTCAAGCCTATCCCCGTAG
AGTGCGTCAAGGTGCAGCAGCACGTCCACCCTCTCAAGCCTATCCCCGTA
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