mRNA_H-paniculata_contig24454.6625.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24454.6625.1
Unique NamemRNA_H-paniculata_contig24454.6625.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Match: A0A6H5KWQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ8_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 7.810e-44
Identity = 85/128 (66.41%), Postives = 97/128 (75.78%), Query Frame = 2 
Query:   89 LAVARHSSRLMFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVFRHEMFKAIGKRPETGGS-GERAPVFLRRWAAHLNHFLGYFPYPK--PMILPLVDLRLSLAPCFEALPAGDTDRAREGTPT 463
            +AVA+  SRL+FEMF +TDELL+YALKHEG VG+  L+LANLVY  VFRHE+F A       GG  G+ APVFLRRW AH+NHFLGYFP P+  P ILPLVD+R SLAP F ALPAGD  R REG PT
Sbjct: 3388 VAVAQQCSRLIFEMFNITDELLFYALKHEGRVGEFPLKLANLVYTVVFRHEIFVAFAALALDGGDDGDGAPVFLRRWGAHVNHFLGYFPCPQAQPSILPLVDMRRSLAPFFAALPAGDKGRTREGVPT 3515
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BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Match: A0A835YYQ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYQ9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.270e-10
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 2 
Query:   98 ARHSSRLMFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVF 232
            A   +RL FEM YLTDELLYYALKHEG+VGD AL+LANL+Y SVF
Sbjct: 2229 AAQCARLSFEMLYLTDELLYYALKHEGYVGDFALKLANLLY-SVF 2272
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BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Match: A0A7S0ZEV6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZEV6_9RHOD)

HSP 1 Score: 60.1 bits (144), Expect = 3.390e-7
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 2 
Query:   86 TLAVARHSSRLMFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVFRHEMFKA-IGKRPETGGSGERAPVF---LRRWAAHLNHFLGYFP 352
            T   A+   +L+FEM Y+TDEL+YYAL+      +  + LAN++Y  VF+H +F   I    ++  S    PV    L  +   L HFL YFP
Sbjct:  401 TAKQAQGYDQLLFEMHYVTDELVYYALRDPS---EAVIELANVLYSFVFKHSIFSEFIHHAFDSSRSNAHIPVMPRVLAPFVGQLTHFLSYFP 490
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BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Match: F0WAF4_9STRA (Uncharacterized protein AlNc14C45G3681 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WAF4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.500e-6
Identity = 35/106 (33.02%), Postives = 49/106 (46.23%), Query Frame = 2 
Query:  113 RLMFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVFRHEMFKAIG--------------------------KRPETGGSGERAPVFLRRWAAHLNHFLGYFP 352
            RL F+ +Y+TDEL++Y ++ EG    V L LANLVY +VF HE+F+                             K P++       P  L+ W   L HFL +FP
Sbjct: 3868 RLYFDFYYITDELVWYGVRREGGRTRV-LMLANLVYSTVFSHEIFQTFATFYAITCGASNCEGNPIQGYCLLSQSKLPKSCNIA--LPTILKPWIQQLGHFLSFFP 3970
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BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 6.530e-6
Identity = 51/126 (40.48%), Postives = 57/126 (45.24%), Query Frame = 2 
Query:   89 LAVARHSSRLMFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVFRHEMFKAIGKRPETGGSGERAPVFLRRWAAHLNHFLGYFPYP--KPMILPLVDLRLSLAPCFEALPAGDTDRAREGTP 460
            +AVA+  SRL+FEMF +TDELL+YALKHEGF     LR A              A G R    GS   A V   R     N F G FP P  +P  LPL        P F   PAG       G P
Sbjct: 4565 VAVAQQCSRLIFEMFNITDELLFYALKHEGFRR---LRRAG-------------ARGGRRRRRGSRLPAEVGGPR-----NPFPGVFPVPPGQPKNLPLGGEEEFARPFFGPPPAGRQGGDERGGP 4669
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BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Match: A0A7S3A8C9_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A8C9_9RHOD)

HSP 1 Score: 55.5 bits (132), Expect = 1.590e-5
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = 2 
Query:  116 LMFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVFRHEMFKAIGKRPETGGSGERAPVFLRRWAAHLNHFLGYFP 352
            L+FEM Y+TDEL+Y+AL+H       ALR+A +++  +F+  +F    +         R    +  WA  L +FL YFP
Sbjct: 2784 LLFEMHYVTDELVYFALRHGP---SSALRIATMLFSFIFKQSVFSTSLQADHGSAIASR---LIAPWAGQLRYFLSYFP 2856
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BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Match: A0A024GCH3_9STRA (Uncharacterized protein n=8 Tax=Albugo candida TaxID=65357 RepID=A0A024GCH3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.610e-5
Identity = 35/112 (31.25%), Postives = 51/112 (45.54%), Query Frame = 2 
Query:   89 LAVARHSSRLMFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVFRHEMFKA-IGKRPETGGSGERA-----------------------PVFLRRWAAHLNHFLGYFP 352
            + ++    +L F+ +Y+TDEL++Y ++ EG    V L LANLVY +VF HE+F   +     T G   R                        P  L+ W   L HFL +FP
Sbjct: 3847 MEISESFRKLYFDFYYITDELVWYGVRREGGRTRV-LMLANLVYSTVFSHEIFHTFVSLYALTCGDANRQGSINQGYTHLAQVKLANSCNIPLPKTLKPWIQQLGHFLSFFP 3957
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24454.6625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KWQ8_9PHAE7.810e-4466.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYQ9_9STRA5.270e-1075.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0ZEV6_9RHOD3.390e-737.63Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
F0WAF4_9STRA6.500e-633.02Uncharacterized protein AlNc14C45G3681 n=1 Tax=Alb... [more]
D8LHH6_ECTSI6.530e-640.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3A8C9_9RHOD1.590e-535.44Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A024GCH3_9STRA1.610e-531.25Uncharacterized protein n=8 Tax=Albugo candida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24454contigH-paniculata_contig24454:1288..3333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size594
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24454.6625.1prot_H-paniculata_contig24454.6625.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24454 1410..3215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929707.5423865-UTR-H-paniculata_contig24454:1287..14091622929707.5423865-UTR-H-paniculata_contig24454:1287..1409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24454 1288..1409 -
1691480975.973444-UTR-H-paniculata_contig24454:1287..14091691480975.973444-UTR-H-paniculata_contig24454:1287..1409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24454 1288..1409 -
1622929707.5932732-UTR-H-paniculata_contig24454:3215..33331622929707.5932732-UTR-H-paniculata_contig24454:3215..3333Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24454 3216..3333 -
1691480976.0365667-UTR-H-paniculata_contig24454:3215..33331691480976.0365667-UTR-H-paniculata_contig24454:3215..3333Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24454 3216..3333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929707.5540388-CDS-H-paniculata_contig24454:1409..15691622929707.5540388-CDS-H-paniculata_contig24454:1409..1569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24454 1410..1569 -
1691480975.9846482-CDS-H-paniculata_contig24454:1409..15691691480975.9846482-CDS-H-paniculata_contig24454:1409..1569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24454 1410..1569 -
1622929707.566074-CDS-H-paniculata_contig24454:2233..23041622929707.566074-CDS-H-paniculata_contig24454:2233..2304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24454 2234..2304 -
1691480975.99522-CDS-H-paniculata_contig24454:2233..23041691480975.99522-CDS-H-paniculata_contig24454:2233..2304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24454 2234..2304 -
1622929707.581526-CDS-H-paniculata_contig24454:3092..32151622929707.581526-CDS-H-paniculata_contig24454:3092..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24454 3093..3215 -
1691480976.0138686-CDS-H-paniculata_contig24454:3092..32151691480976.0138686-CDS-H-paniculata_contig24454:3092..3215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24454 3093..3215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24454.6625.1

>prot_H-paniculata_contig24454.6625.1 ID=prot_H-paniculata_contig24454.6625.1|Name=mRNA_H-paniculata_contig24454.6625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MFEMFYLTDELLYYALKHEGFVGDVALRLANLVYLSVFRHEMFKAIGKRP
ETGGSGERAPVFLRRWAAHLNHFLGYFPYPKPMILPLVDLRLSLAPCFEA
LPAGDTDRAREGTPTPE*
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mRNA from alignment at H-paniculata_contig24454:1288..3333-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24454.6625.1 ID=mRNA_H-paniculata_contig24454.6625.1|Name=mRNA_H-paniculata_contig24454.6625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2046bp|location=Sequence derived from alignment at H-paniculata_contig24454:1288..3333- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAGTCAAAGAGGCGGGGGGAGTTCTTTCCCCTCGGCAAATCCGTCCG
GCTGTGCAGTGACGGAGGCGTTGCCCTCGAGTGGGACGTTGGCGGTGGCA
CGGCACAGCTCTCGGCTCATGTTCGAGATGTTTTACCTGACGGATGAGCT
GCTTTACTATGCGCTCAAGCACGAAGGGTTCGTGGGAGACGTCGCGCTGC
GGCTGGCCAACTTGGTGTATTTGTCTGTGTTTCGTCATGAGGTGATGATG
AGAGCGTACGCTATGCTGGGTCCGGGGGGGGGGGATTAATTTGGAACAAG
CTGAACAAGCTTAGGGGAAGGAGGAATGGGGTAATGTTTTATCCTAGAAT
AACCCCATGTTTTACCCACCGGGATTCTCATTTCTAAGTCATGCCACCTG
CCACAGTTCGTAGAACTAAGCTCTCACGCTCATGTAATAATTCCATTGTT
TTATGTTCGTATTCAACCAGTCTGGTATTTCCCAAACTCCAAGTTGCAGC
ACCGTCTGAGTAGGACATACATACCGTTGTTCTCCAGAACGTGGATGGTT
TGATCCTTCTCTCAGTCACTGTTTGTTTTGTTATTTGTCAAGAAGCCATA
TTCCCCCGGCCTACTTGTGCCTTGTGTTGGTCGGTGCATCCAGACATGAA
TTGAAGATACTTGAGAGGATCTGGGTACAACATTTGATTGATTGTTATGG
GTAGAACTATTTACACTACGGAATGTTTGTAACGTGTTAAAGCCTTCCTG
CATCGGCTAGAAGAGTATTTCCCGGCCGCAGGTGCTGCCACGCTTTTCTG
AAAATCCGTCTCGGTCAGAGGTGTCTGAAACTGAGCCAAAAGTGACTTGT
AAACAGCCCCCTTTTCGGCATATATTGTTGCTGATCATTGCGTGCACCTT
TGGCACATGACCAAGGATTTGACGTGGACAGTGCATTGCGGGGGAGGGGG
GGCGTGAGAGCAGTAGTGTCGGCATGATTTACCATCCCTTTGCAATACCC
ACCTCAAATCCATACCCCGACGGACGCAGATGTTTAAGGCCATTGGGAAA
CGACCCGAGACAGGAGGGAGCGGAGAGAGAGCTCCTGTGTTCTTACGCCG
GTAAGCATAGCAAATGTGGAATATGGCATGATGGCAGGGGGGGGGGGGGG
GGGGAGGAGGGAGTTTGCAAATGACTTCAATCTGCAGTTGTATACACTTA
ACAGTAAAATTACATCAATGGGGGTGCCACTTATTTTCTTCACAGAACAA
TGCACATGGACACCATGCAGTTAACGTTTTAAGATAATCAAAACTCCAAC
CTATAGCCCCTGTAACGCGTGACATGTATCGCGACTTGGGGTTCATTCCC
GGTGGAAGATTATATATTTTTTTGCGTCGCTTTGGCGTCGTGTGTTTGAT
TTCAGCAATTGGCGGAGAATTCTCAAGTCACGGTACAAGGAAGGGTGGTT
AGTTGCAGGAGCAATAGACATTCCACCACAACGGGGATGACCTGCATACG
GCTAAAGCCTGGGTAAAGTGGCTATAGTTCACTTGAAAAACGAAGGAGGT
GGAGCCGAGCGGAACCCAAATTGTTCCGACTCTGAACACCGTCCAATATT
AAGGATATCCTCCAGAATTTTCAGGCTTGTGAAAAGTGACATGACGTCGA
AGTCCCATTTTGTTTTTTTGGCATTCGCTGCTTTGGCGGATCTCGAGACA
CGCGATTTACAGTGGCATGCTTGCCTGGGTCATTTTTATTTATTTAACCA
CACGTTTCATTCAGGTGGGCGGCGCATCTGAACCATTTCCTAGGATACTT
TCCGTACCCCAAGCCGATGATCCTCCCCCTGGTCGACTTGCGGCTGTCGC
TGGCTCCTTGCTTCGAGGCACTACCCGCCGGAGACACAGACAGAGCGCGG
GAGGGTACACCTACGCCTGAATGACGCACCGAGCCCTGCCTCCCATCCCT
ACCTGGCGGCGTCGGGGCCTGACAAGATGTTTCCCAAGTGCTGAGTGCAC
GATGGGAGAACTACAGTAGCCCTTCGCATACATGAACAAAGAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24454:1288..3333-

>mRNA_H-paniculata_contig24454.6625.1 ID=mRNA_H-paniculata_contig24454.6625.1|Name=mRNA_H-paniculata_contig24454.6625.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig24454:1288..3333- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCGAGATGTTTTACCTGACGGATGAGCTGCTTTACTATGCGCTCAA
GCACGAAGGGTTCGTGGGAGACGTCGCGCTGCGGCTGGCCAACTTGGTGT
ATTTGTCTGTGTTTCGTCATGAGATGTTCGAGATGTTTTACCTGACGGAT
GAGCTGCTTTACTATGCGCTCAAGCACGAAGGGTTCGTGGGAGACGTCGC
GCTGCGGCTGGCCAACTTGGTGTATTTGTCTGTGTTTCGTCATGAGATGT
TTAAGGCCATTGGGAAACGACCCGAGACAGGAGGGAGCGGAGAGAGAGCT
CCTGTGTTCTTACGCCGATGTTTAAGGCCATTGGGAAACGACCCGAGACA
GGAGGGAGCGGAGAGAGAGCTCCTGTGTTCTTACGCCGGTGGGCGGCGCA
TCTGAACCATTTCCTAGGATACTTTCCGTACCCCAAGCCGATGATCCTCC
CCCTGGTCGACTTGCGGCTGTCGCTGGCTCCTTGCTTCGAGGCACTACCC
GCCGGAGACACAGACAGAGCGCGGGAGGGTACACCTACGCCTGAATGAGT
GGGCGGCGCATCTGAACCATTTCCTAGGATACTTTCCGTACCCCAAGCCG
ATGATCCTCCCCCTGGTCGACTTGCGGCTGTCGCTGGCTCCTTGCTTCGA
GGCACTACCCGCCGGAGACACAGACAGAGCGCGGGAGGGTACACCTACGC
CTGAATGA
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