mRNA_H-paniculata_contig24453.6624.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 221 bits (564), Expect = 5.200e-66 Identity = 119/237 (50.21%), Postives = 154/237 (64.98%), Query Frame = 1
Query: 25 EETGVALATTAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQLAPS-CDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEALGGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGG-YMEQDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLNGVEAKI 729
E +GVAL + A LWH+R+GHV +L+ LR +GNG+ S CDVCA+ SKQQ HPK A Y+ +R F+LV D+MGP +P ALGGF YI K D H + V+L K KS T+ Q F Q L P R+ +R +KGG Y F KYC + G++L FA+TNTPQ+IG +ER G TL M+RC+LA+S LP FLW EL A+YL+NR PHS+ + TPFK L+G EA +
Sbjct: 255 EISGVALPVKSAA-LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGIKLLFASTNTPQRIGANERIGRTLAGMVRCLLADSGLPHFLWEELFMTASYLSNRSPHSASDNVTPFKALHGKEAYL 490
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 198 bits (504), Expect = 4.980e-55 Identity = 103/233 (44.21%), Postives = 146/233 (62.66%), Query Frame = 1
Query: 40 ALATTAE-AELWHQRLGHVCTNTLNTLRSTEGNGMSLQ-LAPSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEALGGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGG-YMEQDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLNGVEAKI 729
ALA E A+LWH+R+GH+ +L+ LR NG+ C VC L KS QQPHPK Y V R F+ V D +GP TP ALGGF Y +K D T+ + L K ++ ++ + F + ++P ER+H LR + G + +FR+YC + G++LEFA+ NTPQQ+G +ER G T++ ++RC+LA+S LP FLWGEL A YL+NRVPH++ TP+K L G +A +
Sbjct: 278 ALALKVESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGIKLEFASPNTPQQMGANERAGRTVLNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYL 510
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 196 bits (499), Expect = 6.940e-54 Identity = 105/245 (42.86%), Postives = 151/245 (61.63%), Query Frame = 1
Query: 1 MFSSGLGPEETGVALATTAEAELWHQRLGHVCTNTLNTLRSTEGNGMS-LQLAPSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEALGGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGG-YMEQDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLNGVEAKI 729
M +G G G+AL + A LWH+R+GH+ + +L+ LR NG+ + C CAL KS QQPHPK A Y+V R F+LV D +GP TP ALGGF Y +K D T+ + L K K+ ++ + F + ++P E +H LR + G + +FR+Y + G++LEFA+ NTPQQIG +ER G T++ ++RC+LA+S LP FLW EL A YL+ RVPH++ TP+K L G +A +
Sbjct: 511 MIENGPG----GLALKVES-ANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWWELIQTAVYLSTRVPHAALQNGTPYKALYGKDAYL 750
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE) HSP 1 Score: 193 bits (490), Expect = 1.020e-52 Identity = 98/229 (42.79%), Postives = 142/229 (62.01%), Query Frame = 1
Query: 52 TAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQLAPS-CDVCALSKSKQQPHPKTA-VYNVARHFELVIGDMMGPITPEALGGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGG-YMEQDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLNGVEAKI 729
TA A WHQRLGH L L +G+G+ L+ + S C C ++KS QQ HPK A + + +LV D++GPI+P A+GG+ Y++K TD+ TR K VY K D L++ +VQ IP RV L ++ GG Y+ DFR YC TG+ F++ +TPQQ G+SERDG T++ M RC++ E+ LP LWGE+A + +L NR+PH + +TP+ R+ G +A +
Sbjct: 234 TASANTWHQRLGHPNVQVLEQLARIDGSGVHLRDSFSACGTCKINKSSQQNHPKIANMDGITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHKALKGDTPYFRMFGKQANL 462
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 190 bits (483), Expect = 4.090e-52 Identity = 97/225 (43.11%), Postives = 140/225 (62.22%), Query Frame = 1
Query: 61 AELWHQRLGHVCTNTLNTLRSTEGNGMSLQL-APSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEALGGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGG-YMEQDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLNGVEAKI 729
A+LWH+R+GH+ L+ LR + NG+ C VC L KS QQPHPK A Y V R F+ D +GP P ALGG Y +K D T+ + L K ++ ++ + F + ++P ER+H LR ++G + +FR+YC + G++LEFA+ N PQQIG +ER G T++ ++RC+LA+S LP FLWGEL A YL+NRVPH++ TP+K L G +A +
Sbjct: 46 ADLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYL 267
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 188 bits (478), Expect = 5.360e-52 Identity = 99/227 (43.61%), Postives = 136/227 (59.91%), Query Frame = 1
Query: 49 TTAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQ--LAPSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEAL---GGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGGYME-QDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLN 711
T A+ WH+RLGH+ +L+ LR G G+ + L+P C VC ++K KQ PHPK + ++R +LV+ D MGP+ P A G F Y K+TD +T+ K VYL + KSDT T+ R+ +R +KGG +FR YC N+ ++LE+AATNTPQQIG SERDG TL + RC+L + P +WGEL AAYL NR PHS+ TP+ +L+
Sbjct: 414 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGASERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLH 639
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5K500_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K500_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.340e-51 Identity = 99/227 (43.61%), Postives = 137/227 (60.35%), Query Frame = 1
Query: 49 TTAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQ--LAPSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEAL---GGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGGYME-QDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLN 711
T A+ WH+RLGH+ +L+ LR G G+ + L+P C VC ++K KQ PHPK + ++R +LV+ D MGP+ P A G F Y K+TD +T+ K VYL + KSDT T+ R+ +R +KGG +FR YC N+ ++LE+AATNTPQQIG+SERDG TL + RC+L + P +WGEL AAYL NR PHS+ TP+ +L+
Sbjct: 38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLH 263
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5KCM0_9PHAE (Integrase catalytic domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCM0_9PHAE) HSP 1 Score: 184 bits (467), Expect = 3.120e-51 Identity = 97/227 (42.73%), Postives = 136/227 (59.91%), Query Frame = 1
Query: 49 TTAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQ--LAPSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEAL---GGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGGYME-QDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLN 711
T A+ WH+RLGH+ +L+ LR G G+ + L+P C VC ++K KQ PHPK + ++R +LV+ D MGP+ P A G F Y K+TD +T+ K VYL + KSDT T+ R+ +R +KGG +FR C N+ ++LE+AATNTPQQ+G+SERDG TL + RC+L + P +WGEL AAYL NR PHS+ TP+ +L+
Sbjct: 38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDNCKNSAIKLEYAATNTPQQLGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLH 263
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE) HSP 1 Score: 189 bits (479), Expect = 3.160e-51 Identity = 102/233 (43.78%), Postives = 141/233 (60.52%), Query Frame = 1
Query: 31 TGVALATTAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQ--LAPSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEAL---GGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGGYME-QDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLN 711
TGV L + A+ WH+RLGH+ +L+TLR G G+ + L+P C VC ++K KQ PHPK + ++R +LV+ D MGP+ P A G F Y K+TD +T+ K VYL + KSDT T+ R+ +R +KGG +FR YC N+ ++LE+AATNTPQQIG+SERDG TL + RC+L + P +WGEL AAYL NR HS+ TP+ +L+
Sbjct: 376 TGVGLLS---ADTWHRRLGHLNARSLDTLRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENAGSEFRNYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSSHSALGGATPYSKLH 604
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 188 bits (478), Expect = 4.300e-51 Identity = 99/227 (43.61%), Postives = 137/227 (60.35%), Query Frame = 1
Query: 49 TTAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQ--LAPSCDVCALSKSKQQPHPKTAVYNVARHFELVIGDMMGPITPEAL---GGFTYISKLTDYHTRSKFVYLTKTKSDTLATFQTFVQFDLIPRSERVHRLRTNKGGYME-QDFRKYCHNTGVRLEFAATNTPQQIGMSERDGGTLVAMIRCMLAESRLPAFLWGELAFMAAYLANRVPHSSPNMETPFKRLN 711
T A+ WH+RLGH+ +L+ LR G G+ + L+P C VC ++K KQ PHPK + ++R +LV+ D MGP+ P A G F Y K+TD +T+ K VYL + KSDT T+ R+ +R +KGG +FR YC N+ ++LE+AATNTPQQIG+SERDG TL + RC+L + P +WGEL AAYL NR PHS+ TP+ +L+
Sbjct: 38 TLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSP-CGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAIKLEYAATNTPQQIGVSERDGQTLAGVTRCLLKDGDFPPSMWGELMLTAAYLLNRSPHSALGGATPYSKLH 263 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24453.6624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24453.6624.1 >prot_H-paniculata_contig24453.6624.1 ID=prot_H-paniculata_contig24453.6624.1|Name=mRNA_H-paniculata_contig24453.6624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=244bp MFSSGLGPEETGVALATTAEAELWHQRLGHVCTNTLNTLRSTEGNGMSLQback to top mRNA from alignment at H-paniculata_contig24453:1006..1737- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24453.6624.1 ID=mRNA_H-paniculata_contig24453.6624.1|Name=mRNA_H-paniculata_contig24453.6624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=732bp|location=Sequence derived from alignment at H-paniculata_contig24453:1006..1737- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24453:1006..1737- >mRNA_H-paniculata_contig24453.6624.1 ID=mRNA_H-paniculata_contig24453.6624.1|Name=mRNA_H-paniculata_contig24453.6624.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at H-paniculata_contig24453:1006..1737- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |