mRNA_H-paniculata_contig24449.6620.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24449.6620.1
Unique NamemRNA_H-paniculata_contig24449.6620.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 2.500e-58
Identity = 129/274 (47.08%), Postives = 167/274 (60.95%), Query Frame = 1
Query:  886 SSLVSGSEDVFSSLTIEGXXXXXXXXXXXXXXXMSLIGSISFDFRTESITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTIT-EYEFRDPTTFDRCQFIGNTATA-GGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNST 1701
            S  V   ED  S+L+I+G               ++L+G +S    T   +++ N A +AGGAV+++   IGP    V F+SNSA VGG V   GSGN    E +   PTTF RC+F  N ATA GGAV+S +GQD+F +T+FR N A +GGAL LAG+ASL +C+FV+N + + EG A+SNVG I+ I   +F+GNVF C    FLNY TSGD  D  C G  T C  C   P   +VPLCS    HS+SDGG  T+E L +DPGYWRA  +ST
Sbjct:  308 SDSVLSPED--STLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLLPTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNY-TSGDALDEACSGCQTTCDGCVQPP---VVPLCSDVIPHSRSDGGLVTLETLSIDPGYWRATNSST 575          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 2.670e-57
Identity = 115/263 (43.73%), Postives = 163/263 (61.98%), Query Frame = 1
Query:  919 SSLTIEGXXXXXXXXXXXXXXXMSLIGSISFDFRTESITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTITEYEFR--DPTTFDRCQFIGNTATA-GGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNS 1698
            S+L + G               ++L+G ++ +  TE+++++ N A VAGGAVF++G G GP   G  F SNSA VGG V   GSGN     +    +PTTFD C FI N ATA GGA++S AGQD F N+ F+ N A +GG L LAG ASL+ C+FVDN + +  G A+SN+G + ++   +F+GNVF+C+ GM+L+Y+ SG+ ++A C G  T C  C + P   + P C+   EH  S GGT T+E L V+ GYWRA+ +S
Sbjct:  553 STLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGGCETACDGCFFEPP--VPPTCTDVMEHITSAGGTVTLEDLPVERGYWRASPSS 813          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 2.320e-54
Identity = 109/228 (47.81%), Postives = 144/228 (63.16%), Query Frame = 1
Query: 1027 SITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNT--ITEYEFRDPTTFDRCQFIGNTATA-GGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNST 1701
            S+ +  N AAVAGGAVF++GAG GP      F SNSA VGG V V GSGN+  + + E  +PTTF+RC F+GN ATA GGA++S AG D F +T F  N A +GGAL LAG AS+  C+FV+N + ++ G A+SN+G + +    SF+ N F+C  G FL Y+ S D+F+AVC G  T C  C +     +VP C+   EHS S  G  T+E L +  GYWRA  + T
Sbjct:  943 SVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAGTGGALRLAGTASINSCSFVENFSDDEGGAAVSNIGTVESTENISFSANGFDCPSGTFLGYNASADLFEAVCNGCQTACVGCAFADP-LLVPTCTDLLEHSTSSDGRDTLETLSIQAGYWRATTSGT 1169          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE)

HSP 1 Score: 198 bits (504), Expect = 4.290e-51
Identity = 121/285 (42.46%), Postives = 157/285 (55.09%), Query Frame = 1
Query:  886 SSLVSGSEDVFSSLTIEGXXXXXXXXXXXXXXXMSLIGSISFDFRTESITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTITEYEFRDPTTFDRCQFIGNTATA-GGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYST------------SGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNST 1701
            S  V   ED  S+L+I+G               ++L+G +S    TE  +++ N A +AGG V+++   IGP    V F+SN A VGG +                PTTF RC+F  N  TA GGAV+S +GQD+F +T+FR N A +GGAL LAG+ASLE+C+FV+N + E EG A+SNVG I+ I   SF+GNVF C    FLNY+             SGD  D  C G    C  C   PA   VPLCS     S+SDGG  T+E L +DPGYW A  +ST
Sbjct:  318 SDSVLSPED--STLSIDGPTAFVNNTSGENGGALALLGELSISVNTEESSFVDNSADLAGGTVYVSDTAIGPTFSDVIFDSNFAHVGGALL---------------PTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNYTVRDTMLTCSLSTMSGDPLDEACSGCQATCDGCAQPPA---VPLCSDVIPDSRSDGGLVTLETLLIDPGYWMATNSST 582          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 6.120e-51
Identity = 108/234 (46.15%), Postives = 147/234 (62.82%), Query Frame = 1
Query:  997 GSISFDFRTESITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTITEYEFR---DPTTFDRCQFIGNTATA-GGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRA 1686
            G +  +F    + +  N AAVAGGAVF++GA +GP L  V F +N A VGG V   GSGN + EY      +PT F RC+F+ N A A GGAV + AGQDVF + LF      +GGAL LAG A+LE+C+FV+N + +  G A+SN+G I+ +   S+ GNVF C LGMFL+++ SGD  +A C G  T C +        +VP+C+   EH+ S GGT+ I +L+VD G+WRA
Sbjct: 1388 GGLHVEFGAAGVVFSNNTAAVAGGAVFVSGADVGPVLSDVLFEANVAQVGGAVSTVGSGN-LKEYAGLAPPNPTIFTRCRFVNNQAAATGGAVETAAGQDVFVDCLFXXXXXGTGGALRLAGTATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDGCQTPCDDDGCFEEPPLVPICALAMEHTGSAGGTNNITLLRVDDGFWRA 1620          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.720e-48
Identity = 106/242 (43.80%), Postives = 150/242 (61.98%), Query Frame = 1
Query:  985 MSLIGSISFDFRTE-SITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNT--ITEYEFRDPTTFDRCQFIGNTATA-GGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNS 1698
            M+L G  +    TE  I+++ N AAV+GGAVF++ AG G       F SNSA +GG V   GSG +  + + E  +PTTFDRC+F+GN ATA GGA+++ AG D F +T F  N A +GGAL LAG AS+ +C+FV+N +++  G A+SN+G +++  + +F+GN F+C  GMFL Y+ S D+F+ VC G  T      +     +VP+C    EHS S  G  T+E L +  GYWRA   S
Sbjct:  737 MALYGGCALVIDTEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAGTGGALRLAGTASIINCSFVENYSNDGGGAAVSNIGIVSSAEKINFSGNGFDCPTGMFLAYNESDDLFETVCDGCQTXXXXXAFAEP-LLVPMCRDLLEHSTSPDGKLTLEALSIQRGYWRATTTS 977          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.420e-47
Identity = 120/271 (44.28%), Postives = 170/271 (62.73%), Query Frame = 1
Query:  898 SGSEDVFSSLTIEGXXXXXXXXXXXXXXXMSLI--GSISFDFRTESITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTITEYEFRDPTTFDRCQFIGNT-ATAGGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNY-STSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNS 1698
            SG++ + S++T+  XXXXXXXXXXXXXX + L    +++  F  + I+++ N A VAGGA+F++G   GP    V F SN A +GG V + G G  I      +PTTFDRC+F+ N  A+ GGA+ S AG+D FN ++F  N A +GGAL LAG A   +C+FV NTA E EG A+SN+G+I+ +    F+GN F+C   M+L++   S D F+ +C G    C  C +     +VP C+   EH+ SDGG  T+E L +D GYWRA ++S
Sbjct:  912 SGNDGILSNITMNAXXXXXXXXXXXXXXAIVLFEDAALNTSFNVD-ISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSLFGCG--IEPSGGDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSGCEVTCEGCVFDEG-LLVPACTEVMEHATSDGGNITLEALSIDSGYWRATESS 1178          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 4.260e-47
Identity = 98/240 (40.83%), Postives = 144/240 (60.00%), Query Frame = 1
Query:  985 MSLIGSISFDFRTESITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTITEYEFRDPTTFDRCQFIGNTA-TAGGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNST 1701
            M+L   ++ +  T  ++++ N A VAG A+F++   IGP+                + + GSG   T+     PTTFD CQFIGN A + GGA+NS AG+D   N++F  N A +GGAL LAG+A + +C+F +NT+ E EG A+SN+G I++I  ASF GN F+C  G F N + S D F+A+C G  T C  C +     + P+C+   +HS SDGG  T++ L +D G+WRA+ +ST
Sbjct:  833 MALFVDVALNIGTVDVSFLGNSAGVAGXAMFVSSVSIGPRFNXXXXXXXXXXXXXXISIFGSG---TDESGDLPTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNGCETTCDGCVFAEGS-LAPICTEVMDHSTSDGGNVTLQTLSIDRGFWRASTSST 1068          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.710e-46
Identity = 106/263 (40.30%), Postives = 144/263 (54.75%), Query Frame = 1
Query:  919 SSLTIEGXXXXXXXXXXXXXXXMSLIGSISFDFRTESITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNT--ITEYEFRDPTTFDRCQFIGNTATA-GGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNS 1698
            S+L I G               ++    +S D  T  +T+  N A VAGGAVF++GAG+G                  V + GSGN     + E+  PTTFDRC F+GN A+A GGA  S AGQD F   +F  N A +GGAL +AG AS+E+C+FVDN + + EG A+SN+G I+ +    F+ NVF+C  G FL+ + SGD F+AVC G +  C  C +     + P CS    HS S GG  T++ + +D GYWRA   S
Sbjct:  523 STLLINGPTAFVNNTCGGSGGGLAAFDGLSVDIDTAGVTFSGNAAEVAGGAVFVSGAGVGFVFXXXXXXXXXXXXXXAVSIVGSGNLKGFFDLEWPSPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAGCDIVCDGCVFEQG-LVGPACSEVMAHSTSTGGNTTLQEVSIDRGYWRATSVS 784          
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 7.470e-43
Identity = 97/229 (42.36%), Postives = 134/229 (58.52%), Query Frame = 1
Query: 1030 ITYMRNFAAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTITEYEFRDPTTFDRCQFIGNT-ATAGGAVNSGAGQDVFNNTLFRRNGARSGGALSLAGQASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLNYS-----TSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTIEMLKVDPGYWRAAKNS 1698
            I+++ N A VAGGA+F++G   GP    V F SN A +GG V     G  I      +PTTFDRC+F+ N  A+ GGA+ S AG+D FN ++F  N A +GGAL LAG     +CTFV NTA + EG A+SN+G+I+ +    F+GN F+C   M+L++       S   F+ +C G    C  C       +VP C+   EH+ SDGG  T+E L +D GYWRA ++S
Sbjct:  683 ISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCG--IEPSGVDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSGCEVTCKGCVNDGL--LVPACTEVMEHATSDGGNITLEALSIDSGYWRATESS 907          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24449.6620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FHH1_ECTSI2.500e-5847.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G301_ECTSI2.670e-5743.73Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI2.320e-5447.81Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5KR67_9PHAE4.290e-5142.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5Y7_ECTSI6.120e-5146.15Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LIY0_ECTSI3.720e-4843.80Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTI5_ECTSI2.420e-4744.28Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5K0E9_9PHAE4.260e-4740.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FTL7_ECTSI1.710e-4640.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K1P8_9PHAE7.470e-4342.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24449contigH-paniculata_contig24449:2..2148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.9
Seed ortholog evalue9.2e-56
Seed eggNOG ortholog2880.D7FHH1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1701
Cds size1701
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929707.114772-CDS-H-paniculata_contig24449:1..15101622929707.114772-CDS-H-paniculata_contig24449:1..1510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24449 2..1510 +
1691480975.8053055-CDS-H-paniculata_contig24449:1..15101691480975.8053055-CDS-H-paniculata_contig24449:1..1510Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24449 2..1510 +
1622929707.1322937-CDS-H-paniculata_contig24449:1956..21481622929707.1322937-CDS-H-paniculata_contig24449:1956..2148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24449 1957..2148 +
1691480975.8208115-CDS-H-paniculata_contig24449:1956..21481691480975.8208115-CDS-H-paniculata_contig24449:1956..2148Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24449 1957..2148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24449.6620.1prot_H-paniculata_contig24449.6620.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24449 2..2148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24449.6620.1

>prot_H-paniculata_contig24449.6620.1 ID=prot_H-paniculata_contig24449.6620.1|Name=mRNA_H-paniculata_contig24449.6620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=567bp
VHVEKNSSVSWEVETSFSGNTAEGSGGALDVYDGSSASWGAELSLSNGST
ASRSELTAFVGNTAKDVGGAVSIYDHAQVSWAASTMFSGNGAMKSGGAVN
AGYGSTVSWTVETSFFNNSAHYGGAVLAGDDDSGAHWEGETSFLANTAGW
SGGALNVYNGARMSWAAVTSFYNNSAIYGGAILIGEDSTVSWEAGTSFSG
NTAEGSGGALNAFDNCSVYWKADTYFTNNTANYAGAIYAFNNSNVTWNAD
TSFSGNIADESGGAVLIDHGCSLSWGAETSFLNNTAGGSGGAVYMSSLVS
GSEDVFSSLTIEGETKFLENSCGADGGAMSLIGSISFDFRTESITYMRNF
AAVAGGAVFIAGAGIGPKLVGVEFNSNSAFVGGGVYVTGSGNTITEYEFR
DPTTFDRCQFIGNTATAGGAVNSGAGQDVFNNTLFRRNGARSGGALSLAG
QASLEHCTFVDNTASEDEGPAISNVGHIATIRRASFAGNVFECELGMFLN
YSTSGDIFDAVCKGFNTNCTECDYGPAEKIVPLCSPEPEHSKSDGGTHTI
EMLKVDPGYWRAAKNST
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mRNA from alignment at H-paniculata_contig24449:2..2148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24449.6620.1 ID=mRNA_H-paniculata_contig24449.6620.1|Name=mRNA_H-paniculata_contig24449.6620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2147bp|location=Sequence derived from alignment at H-paniculata_contig24449:2..2148+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCACGTTGAAAAAAACTCCAGTGTATCCTGGGAAGTGGAGACGTCGTT CTCTGGCAACACCGCGGAGGGTTCTGGGGGTGCTCTGGATGTTTACGATG GTTCGAGTGCATCGTGGGGAGCCGAACTGTCGTTATCTAACGGCTCAACT GCTTCACGGAGTGAACTGACAGCGTTCGTCGGCAACACTGCAAAAGATGT GGGCGGTGCGGTGTCTATATATGATCATGCTCAAGTATCGTGGGCAGCGA GTACCATGTTCTCAGGCAACGGAGCAATGAAGTCCGGGGGTGCGGTGAAC GCTGGCTATGGCTCAACTGTATCATGGACAGTAGAAACGTCGTTCTTCAA CAATTCAGCTCATTATGGGGGTGCCGTGCTTGCTGGTGACGACGACTCCG GAGCACATTGGGAAGGCGAAACGTCGTTTCTAGCCAACACCGCGGGGTGG TCTGGTGGTGCGTTAAATGTTTACAACGGCGCCCGTATGTCGTGGGCAGC GGTAACGTCGTTCTACAACAACTCTGCCATCTACGGGGGTGCCATACTTA TCGGCGAAGACTCCACGGTGTCGTGGGAGGCAGGGACATCGTTCTCTGGC AACACCGCGGAGGGTTCTGGGGGTGCCTTGAACGCTTTTGACAACTGTAG TGTATACTGGAAAGCGGATACATATTTCACCAACAACACCGCTAACTATG CGGGTGCCATTTACGCTTTCAACAATTCCAATGTAACCTGGAACGCGGAC ACGTCGTTCTCCGGCAATATCGCAGATGAATCGGGTGGTGCTGTCCTTAT TGACCACGGCTGCAGTTTGTCATGGGGAGCGGAAACGTCATTCCTTAACA ACACTGCAGGCGGATCAGGCGGTGCTGTTTATATGTCGTCGTTAGTTTCG GGCAGCGAAGATGTTTTTTCGTCACTCACCATCGAAGGCGAGACAAAATT CCTTGAGAACAGTTGTGGGGCCGACGGAGGTGCAATGTCACTGATCGGTT CGATATCCTTCGATTTCAGAACAGAAAGCATCACGTATATGCGGAACTTT GCCGCCGTCGCAGGAGGGGCGGTGTTCATAGCAGGGGCAGGGATTGGGCC GAAGTTAGTTGGTGTGGAATTCAATTCGAACTCTGCTTTTGTCGGTGGCG GGGTGTACGTTACGGGTAGTGGGAATACCATAACTGAATATGAATTCCGG GATCCAACCACGTTTGACCGATGCCAGTTTATCGGCAATACGGCAACAGC TGGCGGAGCGGTGAATAGCGGGGCAGGGCAAGATGTTTTCAACAATACGC TGTTCAGGCGTAACGGTGCAAGGAGTGGAGGAGCTTTGAGTCTCGCTGGC CAGGCATCTCTCGAACACTGCACATTTGTCGACAACACTGCGTCCGAGGA CGAGGGACCGGCGATATCTAATGTGGGCCACATCGCGACCATTCGCCGCG CTTCTTTTGCTGGCAACGTCTTCGAGTGCGAGCTGGGAATGTTTCTCAAT TACAGTACGGTGGGTCTCAAAAGATCTTTGTCATCACGCAACTTTGTTGT GTGATTGTCAGCTGCTAGCTCAATACGTTTTGGCTTTGATGGTCATTTGG ATTAGACGCAAATCGAACCTACAGTAATGGATGATCAACGGGTTTCATCG GATGAAAATGTTTGGTCGCTGATTCTGGGTGCTACCATCATGCCCGAAGG CTACGTGCTACACTAGGTCAACGCAAGTTGACTTTCACCGGCTGGCAAGG GTGAAGTGAAGGGCCCAGTCTTGTTGTCATATCGTCGACACAACAGTGAA GCTTGACAGTATGTACCAACGACTATATAAACTTACCAGACTTCTCTTTA TCATTCGATGCTTCGTTCGGACACATACACATGCAACTGTCGTAGTCTGA CCTAAACACACAATTCATCTCATTGTTTCCTCCCAAACGTGTCGCCACCC CACAGTCGGGTGACATCTTTGACGCAGTCTGCAAAGGATTCAACACAAAT TGCACGGAATGCGACTACGGCCCCGCAGAAAAAATCGTTCCTTTGTGTAG TCCGGAACCCGAGCATTCAAAGAGTGACGGTGGCACTCATACCATAGAGA TGCTGAAGGTTGACCCTGGTTACTGGCGAGCTGCGAAAAACAGTACA
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Coding sequence (CDS) from alignment at H-paniculata_contig24449:2..2148+

>mRNA_H-paniculata_contig24449.6620.1 ID=mRNA_H-paniculata_contig24449.6620.1|Name=mRNA_H-paniculata_contig24449.6620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3402bp|location=Sequence derived from alignment at H-paniculata_contig24449:2..2148+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCACGTTGAAAAAAACTCCAGTGTATCCTGGGAAGTGGAGACGTCGTT
CTCTGGCAACACCGCGGAGGGTTCTGGGGGTGCTCTGGATGTTTACGATG
GTTCGAGTGCATCGTGGGGAGCCGAACTGTCGTTATCTAACGGCTCAACT
GCTTCACGGAGTGAACTGACAGCGTTCGTCGGCAACACTGCAAAAGATGT
GGGCGGTGCGGTGTCTATATATGATCATGCTCAAGTATCGTGGGCAGCGA
GTACCATGTTCTCAGGCAACGGAGCAATGAAGTCCGGGGGTGCGGTGAAC
GCTGGCTATGGCTCAACTGTATCATGGACAGTAGAAACGTCGTTCTTCAA
CAATTCAGCTCATTATGGGGGTGCCGTGCTTGCTGGTGACGACGACTCCG
GAGCACATTGGGAAGGCGAAACGTCGTTTCTAGCCAACACCGCGGGGTGG
TCTGGTGGTGCGTTAAATGTTTACAACGGCGCCCGTATGTCGTGGGCAGC
GGTAACGTCGTTCTACAACAACTCTGCCATCTACGGGGGTGCCATACTTA
TCGGCGAAGACTCCACGGTGTCGTGGGAGGCAGGGACATCGTTCTCTGGC
AACACCGCGGAGGGTTCTGGGGGTGCCTTGAACGCTTTTGACAACTGTAG
TGTATACTGGAAAGCGGATACATATTTCACCAACAACACCGCTAACTATG
CGGGTGCCATTTACGCTTTCAACAATTCCAATGTAACCTGGAACGCGGAC
ACGTCGTTCTCCGGCAATATCGCAGATGAATCGGGTGGTGCTGTCCTTAT
TGACCACGGCTGCAGTTTGTCATGGGGAGCGGAAACGTCATTCCTTAACA
ACACTGCAGGCGGATCAGGCGGTGCTGTTTATATGTCGTCGTTAGTTTCG
GGCAGCGAAGATGTTTTTTCGTCACTCACCATCGAAGGCGAGACAAAATT
CCTTGAGAACAGTTGTGGGGCCGACGGAGGTGCAATGTCACTGATCGGTT
CGATATCCTTCGATTTCAGAACAGAAAGCATCACGTATATGCGGAACTTT
GCCGCCGTCGCAGGAGGGGCGGTGTTCATAGCAGGGGCAGGGATTGGGCC
GAAGTTAGTTGGTGTGGAATTCAATTCGAACTCTGCTTTTGTCGGTGGCG
GGGTGTACGTTACGGGTAGTGGGAATACCATAACTGAATATGAATTCCGG
GATCCAACCACGTTTGACCGATGCCAGTTTATCGGCAATACGGCAACAGC
TGGCGGAGCGGTGAATAGCGGGGCAGGGCAAGATGTTTTCAACAATACGC
TGTTCAGGCGTAACGGTGCAAGGAGTGGAGGAGCTTTGAGTCTCGCTGGC
CAGGCATCTCTCGAACACTGCACATTTGTCGACAACACTGCGTCCGAGGA
CGAGGGACCGGCGATATCTAATGTGGGCCACATCGCGACCATTCGCCGCG
CTTCTTTTGCTGGCAACGTCTTCGAGTGCGAGCTGGGAATGTTTCTCAAT
TACAGTACGGTGCACGTTGAAAAAAACTCCAGTGTATCCTGGGAAGTGGA
GACGTCGTTCTCTGGCAACACCGCGGAGGGTTCTGGGGGTGCTCTGGATG
TTTACGATGGTTCGAGTGCATCGTGGGGAGCCGAACTGTCGTTATCTAAC
GGCTCAACTGCTTCACGGAGTGAACTGACAGCGTTCGTCGGCAACACTGC
AAAAGATGTGGGCGGTGCGGTGTCTATATATGATCATGCTCAAGTATCGT
GGGCAGCGAGTACCATGTTCTCAGGCAACGGAGCAATGAAGTCCGGGGGT
GCGGTGAACGCTGGCTATGGCTCAACTGTATCATGGACAGTAGAAACGTC
GTTCTTCAACAATTCAGCTCATTATGGGGGTGCCGTGCTTGCTGGTGACG
ACGACTCCGGAGCACATTGGGAAGGCGAAACGTCGTTTCTAGCCAACACC
GCGGGGTGGTCTGGTGGTGCGTTAAATGTTTACAACGGCGCCCGTATGTC
GTGGGCAGCGGTAACGTCGTTCTACAACAACTCTGCCATCTACGGGGGTG
CCATACTTATCGGCGAAGACTCCACGGTGTCGTGGGAGGCAGGGACATCG
TTCTCTGGCAACACCGCGGAGGGTTCTGGGGGTGCCTTGAACGCTTTTGA
CAACTGTAGTGTATACTGGAAAGCGGATACATATTTCACCAACAACACCG
CTAACTATGCGGGTGCCATTTACGCTTTCAACAATTCCAATGTAACCTGG
AACGCGGACACGTCGTTCTCCGGCAATATCGCAGATGAATCGGGTGGTGC
TGTCCTTATTGACCACGGCTGCAGTTTGTCATGGGGAGCGGAAACGTCAT
TCCTTAACAACACTGCAGGCGGATCAGGCGGTGCTGTTTATATGTCGTCG
TTAGTTTCGGGCAGCGAAGATGTTTTTTCGTCACTCACCATCGAAGGCGA
GACAAAATTCCTTGAGAACAGTTGTGGGGCCGACGGAGGTGCAATGTCAC
TGATCGGTTCGATATCCTTCGATTTCAGAACAGAAAGCATCACGTATATG
CGGAACTTTGCCGCCGTCGCAGGAGGGGCGGTGTTCATAGCAGGGGCAGG
GATTGGGCCGAAGTTAGTTGGTGTGGAATTCAATTCGAACTCTGCTTTTG
TCGGTGGCGGGGTGTACGTTACGGGTAGTGGGAATACCATAACTGAATAT
GAATTCCGGGATCCAACCACGTTTGACCGATGCCAGTTTATCGGCAATAC
GGCAACAGCTGGCGGAGCGGTGAATAGCGGGGCAGGGCAAGATGTTTTCA
ACAATACGCTGTTCAGGCGTAACGGTGCAAGGAGTGGAGGAGCTTTGAGT
CTCGCTGGCCAGGCATCTCTCGAACACTGCACATTTGTCGACAACACTGC
GTCCGAGGACGAGGGACCGGCGATATCTAATGTGGGCCACATCGCGACCA
TTCGCCGCGCTTCTTTTGCTGGCAACGTCTTCGAGTGCGAGCTGGGAATG
TTTCTCAATTACAGTACGTCGGGTGACATCTTTGACGCAGTCTGCAAAGG
ATTCAACACAAATTGCACGGAATGCGACTACGGCCCCGCAGAAAAAATCG
TTCCTTTGTGTAGTCCGGAACCCGAGCATTCAAAGAGTGACGGTGGCACT
CATACCATAGAGATGCTGAAGGTTGACCCTGGTTACTGGCGAGCTGCGAA
AAACAGTACATCGGGTGACATCTTTGACGCAGTCTGCAAAGGATTCAACA
CAAATTGCACGGAATGCGACTACGGCCCCGCAGAAAAAATCGTTCCTTTG
TGTAGTCCGGAACCCGAGCATTCAAAGAGTGACGGTGGCACTCATACCAT
AGAGATGCTGAAGGTTGACCCTGGTTACTGGCGAGCTGCGAAAAACAGTA
CA
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