mRNA_H-paniculata_contig2444.6619.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2444.6619.1
Unique NamemRNA_H-paniculata_contig2444.6619.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: D7FSV5_ECTSI (Fatty acid desaturase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSV5_ECTSI)

HSP 1 Score: 369 bits (946), Expect = 4.660e-124
Identity = 186/248 (75.00%), Postives = 202/248 (81.45%), Query Frame = 1 
Query:   25 AFTFSALPSVRHAPS------NRRSST--------SMVASVSKVGSVGAPTTAPSTGVGAG----KRLHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVRGKEAVEPNAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIM 714
            AFT +A+PS   A S      +RRS          SMV SV        P T P TG  AG    +RLHVQLGDAFYDLTGWRKLHPAGNHWIDR+AERDATDVMAAFHSD+AFDRLKTLP V+GKE VEPN+VTK FRAFRKELVEAGWFKRIWYKDA ++A Q+GTFAAGI+L+RTNPWLGV+V+ LAHTTGGW AHDMVHGRGKFC+AMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIM
Sbjct:   20 AFTLNAVPSSSAAMSTSSGRGHRRSRACSASRQQPSMVTSV--------PRTVPETGTKAGAASKQRLHVQLGDAFYDLTGWRKLHPAGNHWIDRYAERDATDVMAAFHSDDAFDRLKTLPKVKGKEIVEPNSVTKNFRAFRKELVEAGWFKRIWYKDASIVALQVGTFAAGIVLSRTNPWLGVVVMGLAHTTGGWLAHDMVHGRGKFCSAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIM 259
[Close]
BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: D7G2Y4_ECTSI (Fatty acid desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y4_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.440e-108
Identity = 142/182 (78.02%), Postives = 164/182 (90.11%), Query Frame = 1 
Query:  172 LHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVRGKEAVEPNAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIMV 717
            +  QLGD+FYDLTGWRKLHP+G HWIDRFAERDATDVMAAFHSD+AFDRLKTLPVV+GK  VEP+ VTK +RAFRKELV+AGWF R+WYKDA +LA QLG FAAG+++TR NPWLG +V+ +AHTTGGW AHDMVHGRG++C AMRHYGA+ CGLSS+WWSEKHNLHHAFTNV+G DEDI+V
Sbjct:   22 IKPQLGDSFYDLTGWRKLHPSGEHWIDRFAERDATDVMAAFHSDDAFDRLKTLPVVKGKAGVEPDDVTKNYRAFRKELVDAGWFDRVWYKDASVLALQLGAFAAGVLVTRVNPWLGTLVMGMAHTTGGWLAHDMVHGRGRYCTAMRHYGALMCGLSSRWWSEKHNLHHAFTNVIGADEDIIV 203
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BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: A0A836CAU7_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAU7_9STRA)

HSP 1 Score: 256 bits (653), Expect = 3.950e-80
Identity = 120/197 (60.91%), Postives = 144/197 (73.10%), Query Frame = 1 
Query:  130 PTTAPSTGVGAGKRLHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVRGKEAVEPNAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWL-GVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIMV 717
            P  AP+       RLHVQ+G+A YDLTGWR  HPAG+HWIDRF ++DATDV+ AFHSDEA    + LP  RG EAVEP+A T KFR  R +LV  GWFKR W  +AFLL +Q+  FA G+ L R+   L G  VL +AHTT GW AHD +HGRGK+ + MR++G +T GL +KWWSEKHNLHHAFTN+VGVDEDIMV
Sbjct:   43 PVAAPAVAAPKKNRLHVQIGNAVYDLTGWRAKHPAGSHWIDRFHQKDATDVIYAFHSDEAMQMFERLPRARGVEAVEPDATTLKFRELRAKLVADGWFKREWQHEAFLLVAQMTQFAVGVALARSGHVLAGTCVLGVAHTTCGWLAHDFIHGRGKWPSFMRYFGCLTVGLGAKWWSEKHNLHHAFTNLVGVDEDIMV 239
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BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: A0A6U1MJH9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MJH9_9STRA)

HSP 1 Score: 207 bits (528), Expect = 2.950e-61
Identity = 97/183 (53.01%), Postives = 122/183 (66.67%), Query Frame = 1 
Query:  169 RLHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVRGKEAVEPNAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIMV 717
            RL V L   +YDLT WR  HPAG HWIDR   +DATDVM AFHS+EA    + LP  +G+E    +  T +FR FR +LV  GWFKR W ++A +L   L T A  + L +    LG++ L +   TGGW +HD VHGRG +C  MR++G ++ GLS KWWSEKHN HHA+TNV+GVDEDIMV
Sbjct:   62 RLEVALDGVWYDLTRWRSSHPAGEHWIDRMNGKDATDVMTAFHSEEAMKMFQGLPKAQGREDPVVDQTTLEFRKFRAQLVADGWFKRNWVQEAKVLGLWLTTCAVSVWLAKVCAPLGLIGLGIVSATGGWLSHDYVHGRGPWCTFMRNFGCLSIGLSPKWWSEKHNKHHAWTNVIGVDEDIMV 244
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BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: A0A0M0JBD4_9EUKA (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBD4_9EUKA)

HSP 1 Score: 201 bits (511), Expect = 4.590e-58
Identity = 107/215 (49.77%), Postives = 130/215 (60.47%), Query Frame = 1 
Query:  118 SVGAPT-TAPSTGVGA-------GKR------LHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVR--GKEAVEPNAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIM 714
            S  APT TAP++G  A       G+R      L ++L   +YDL  WR  HP G HWID FA RDATDV  AFHS +A    K LP +R        P+ +T  FR  R ELV  GW++R+W+++A  L   L  FA G  L R  PWL  ++LAL  T+ GW AHD VHGRG+FC  MR +GA+  G S+ WWS KHNLHHA TN VGVDEDIM
Sbjct:   89 SAAAPTATAPASGSAAASVADVQGRRGAARESLPLRLDGEWYDLHAWRAAHPGGTHWIDGFAHRDATDVFHAFHSADATAMTKRLPRLRMPPPSLPPPSDLTLSFRRLRDELVREGWYERVWWREAANLTPVLALFAIGSHLARPMPWLATVLLALGSTSAGWVAHDFVHGRGRFCATMRGFGALFNGHSATWWSNKHNLHHACTNQVGVDEDIM 303
[Close]
BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: A0A6H5JY43_9PHAE (FA_desaturase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY43_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.550e-55
Identity = 77/103 (74.76%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:  409 EAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIMV 717
            +AGWF R+WYKDA +LA QLG FAAG+++TR NPWLG +V+ +AHTTGGW AHDMVHGRG +C AMRHYGA+ CGLSS+WWSEKHNLHHAFTNV+G DEDI+V
Sbjct:    8 DAGWFDRVWYKDASVLALQLGAFAAGVLVTRVNPWLGTLVMGIAHTTGGWLAHDMVHGRGGYCTAMRHYGALMCGLSSRWWSEKHNLHHAFTNVIGADEDIIV 110
[Close]
BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: A0A6V2NBU4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2NBU4_EMIHU)

HSP 1 Score: 191 bits (486), Expect = 1.150e-54
Identity = 97/187 (51.87%), Postives = 119/187 (63.64%), Query Frame = 1 
Query:  172 LHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVRGKEAVEP------NAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIM 714
            L V++   ++DL  WR  HPAG HW+D FA RDATDVM AFHS++A   L  LP  R   AV+P      +A+T  FR  R  LV  GW++R+W+++A  L   L  +  G  L R  P L  + LAL  T+ GW AHD VHGRG+FC AMR +GA+  G SS WWS KHNLHHA TN VGVDEDIM
Sbjct:  230 LPVRIDGEWFDLRRWRATHPAGVHWLDGFAGRDATDVMHAFHSEDAVAMLSRLP--RLSAAVQPPSLPPASALTLGFRRLRARLVAEGWYERLWWREAQNLLPCLACYGVGWRLARAAPLLATVSLALGSTSAGWIAHDFVHGRGRFCAAMRGFGALMNGHSSTWWSNKHNLHHACTNQVGVDEDIM 414
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BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: L1IL22_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IL22_GUITC)

HSP 1 Score: 187 bits (475), Expect = 4.540e-54
Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = 1 
Query:  169 RLHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVRG-KEAV-EPNAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGII-----LTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDI 711
            +L V++ D +YDL+ WRK HPAG HWID + ++DAT+VM  FHSD+  + LK LP  +   E V EP++ T  FR FRK+LV+ GWF+R W  +AF L S    FAA ++     L R  P     VL +++T  GW +HD VHGRGKF + MR +G +  G+   WWS+KHNLHHA TN VG+DEDI
Sbjct:    3 QLRVRIDDVWYDLSRWRKAHPAGTHWIDLYRDQDATEVMYGFHSDKGMEMLKRLPKAKTVPEGVKEPSSATMNFRKFRKQLVDDGWFERDWAHEAFNLGSW--AFAAAMVRCPYTLKRCIPVTLSQVLGVSNTIAGWLSHDYVHGRGKFADFMRPFGYLCGGMGPTWWSDKHNLHHARTNEVGIDEDI 188
[Close]
BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: A0A7S3RVU0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RVU0_EMIHU)

HSP 1 Score: 191 bits (486), Expect = 2.010e-53
Identity = 97/187 (51.87%), Postives = 119/187 (63.64%), Query Frame = 1 
Query:  172 LHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVRGKEAVEP------NAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIM 714
            L V++   ++DL  WR  HPAG HW+D FA RDATDVM AFHS++A   L  LP  R   AV+P      +A+T  FR  R  LV  GW++R+W+++A  L   L  +  G  L R  P L  + LAL  T+ GW AHD VHGRG+FC AMR +GA+  G SS WWS KHNLHHA TN VGVDEDIM
Sbjct:  230 LPVRIDGEWFDLRRWRATHPAGVHWLDGFAGRDATDVMHAFHSEDAVAMLSRLP--RLSAAVQPPSLPPASALTLGFRRLRARLVAEGWYERLWWREAQNLLPCLACYGVGWRLARAAPLLATVSLALGSTSAGWIAHDFVHGRGRFCAAMRGFGALMNGHSSTWWSNKHNLHHACTNQVGVDEDIM 414
[Close]
BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Match: A0A7S2AXE7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AXE7_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.430e-52
Identity = 89/190 (46.84%), Postives = 121/190 (63.68%), Query Frame = 1 
Query:  169 RLHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHSDEAFDRLKTLPVVR------GKEA-VEPNAVTKKFRAFRKELVEAGWFKRIWYKDAFLLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCNAMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIMV 717
            RL V++ D +YDLTGWRK HP+G+HWID +   DAT+VM AFHSD A   L  LP  R      G++A ++ + V++ FRA R +L E GWFKR  + +A  L              R N  +  ++L +A+T+ GW AHD +HGRGK+   MR +G +  G+S+ WWS+KHNLHHA TNV G+DED+MV
Sbjct:   97 RLVVRMDDEWYDLTGWRKAHPSGSHWIDLYNNADATEVMYAFHSDTARKMLPRLPKARPNEIPTGEDAPIDVSPVSRGFRALRVKLEEEGWFKRKAWPEAKNLIKWTALMGVAAAFARRNTLISALLLGIANTSAGWLAHDYIHGRGKWAMTMRAFGMLGGGMSATWWSDKHNLHHALTNVAGIDEDLMV 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2444.6619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSV5_ECTSI4.660e-12475.00Fatty acid desaturase n=2 Tax=Ectocarpus TaxID=287... [more]
D7G2Y4_ECTSI1.440e-10878.02Fatty acid desaturase n=1 Tax=Ectocarpus siliculos... [more]
A0A836CAU7_9STRA3.950e-8060.91Fatty acid desaturase n=1 Tax=Tribonema minus TaxI... [more]
A0A6U1MJH9_9STRA2.950e-6153.01Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0M0JBD4_9EUKA4.590e-5849.77Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5JY43_9PHAE2.550e-5574.76FA_desaturase domain-containing protein n=1 Tax=Ec... [more]
A0A6V2NBU4_EMIHU1.150e-5451.87Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
L1IL22_GUITC4.540e-5449.47Uncharacterized protein (Fragment) n=1 Tax=Guillar... [more]
A0A7S3RVU0_EMIHU2.010e-5351.87Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S2AXE7_9STRA1.430e-5246.84Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2444contigH-paniculata_contig2444:14533..20943 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionFatty acid desaturase
Ec32 orthologEc-19_001920.1
EC1.14.19.38,1.14.19.47
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Taxonomic scopeEukaryota
Seed ortholog score369.8
Seed ortholog evalue9.8e-100
Seed eggNOG ortholog2880.D7FSV5
KEGG koko:K21737
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001505,GO:0001820,GO:0002682,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0004768,GO:0005575,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006810,GO:0006811,GO:0006812,GO:0006836,GO:0006837,GO:0006936,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007271,GO:0007275,GO:0007588,GO:0007610,GO:0007631,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009914,GO:0009987,GO:0010817,GO:0014055,GO:0015695,GO:0015696,GO:0015844,GO:0015850,GO:0015870,GO:0015893,GO:0016020,GO:0016021,GO:0016053,GO:0016192,GO:0016197,GO:0016215,GO:0016491,GO:0016705,GO:0016717,GO:0018991,GO:0019098,GO:0019752,GO:0022414,GO:0023052,GO:0023061,GO:0030421,GO:0031224,GO:0031347,GO:0032456,GO:0032501,GO:0032502,GO:0032504,GO:0032787,GO:0032940,GO:0033036,GO:0033559,GO:0035264,GO:0040002,GO:0040007,GO:0040011,GO:0042221,GO:0042335,GO:0042493,GO:0042755,GO:0043050,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044425,GO:0045088,GO:0046394,GO:0046879,GO:0046903,GO:0046907,GO:0048583,GO:0048589,GO:0048609,GO:0048856,GO:0050776,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055114,GO:0061526,GO:0065007,GO:0065008,GO:0071702,GO:0071704,GO:0071705,GO:0072330,GO:0080134,GO:0098916,GO:0099536,GO:0099537,GO:0099643,GO:1901374,GO:1901576
EggNOG free text desc.unsaturated fatty acid biosynthetic process
EggNOG OGsCOG3239@1,KOG4232@2759
Exons5
Model size717
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2444.6619.1prot_H-paniculata_contig2444.6619.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2444 14533..20943 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.981099-CDS-H-paniculata_contig2444:14532..147151622929706.981099-CDS-H-paniculata_contig2444:14532..14715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 14533..14715 +
1691480975.7475746-CDS-H-paniculata_contig2444:14532..147151691480975.7475746-CDS-H-paniculata_contig2444:14532..14715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 14533..14715 +
1622929707.0021536-CDS-H-paniculata_contig2444:17823..179011622929707.0021536-CDS-H-paniculata_contig2444:17823..17901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 17824..17901 +
1691480975.764672-CDS-H-paniculata_contig2444:17823..179011691480975.764672-CDS-H-paniculata_contig2444:17823..17901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 17824..17901 +
1622929707.02347-CDS-H-paniculata_contig2444:18467..186111622929707.02347-CDS-H-paniculata_contig2444:18467..18611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 18468..18611 +
1691480975.7750592-CDS-H-paniculata_contig2444:18467..186111691480975.7750592-CDS-H-paniculata_contig2444:18467..18611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 18468..18611 +
1622929707.0457706-CDS-H-paniculata_contig2444:19644..198291622929707.0457706-CDS-H-paniculata_contig2444:19644..19829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 19645..19829 +
1691480975.784514-CDS-H-paniculata_contig2444:19644..198291691480975.784514-CDS-H-paniculata_contig2444:19644..19829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 19645..19829 +
1622929707.0604222-CDS-H-paniculata_contig2444:20816..209431622929707.0604222-CDS-H-paniculata_contig2444:20816..20943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 20817..20943 +
1691480975.7955315-CDS-H-paniculata_contig2444:20816..209431691480975.7955315-CDS-H-paniculata_contig2444:20816..20943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 20817..20943 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2444.6619.1

>prot_H-paniculata_contig2444.6619.1 ID=prot_H-paniculata_contig2444.6619.1|Name=mRNA_H-paniculata_contig2444.6619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
AAAATGCEAFTFSALPSVRHAPSNRRSSTSMVASVSKVGSVGAPTTAPST
GVGAGKRLHVQLGDAFYDLTGWRKLHPAGNHWIDRFAERDATDVMAAFHS
DEAFDRLKTLPVVRGKEAVEPNAVTKKFRAFRKELVEAGWFKRIWYKDAF
LLASQLGTFAAGIILTRTNPWLGVMVLALAHTTGGWYAHDMVHGRGKFCN
AMRHYGAVTCGLSSKWWSEKHNLHHAFTNVVGVDEDIMV
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mRNA from alignment at H-paniculata_contig2444:14533..20943+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2444.6619.1 ID=mRNA_H-paniculata_contig2444.6619.1|Name=mRNA_H-paniculata_contig2444.6619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6411bp|location=Sequence derived from alignment at H-paniculata_contig2444:14533..20943+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCAGCAGCCACGGGATGCGAGGCCTTTACATTCAGCGCACTCCCATC
TGTGCGCCATGCTCCATCGAATCGAAGAAGCTCGACGAGCATGGTGGCTT
CAGTGTCCAAGGTGGGATCGGTGGGTGCTCCCACCACGGCGCCATCCACA
GGTGTTGGCGCGGGCAAACGACTTCATGTCCAGGTGACTTTTCGGCCAAG
TTCTAGTGTTCATTATATAGGGGGTGCACAGGATTGGATATCAGATTGTA
GGGAGCACACGGTGCAGCAGAAGATTTGTTGGGGCATCACATAGTGACAA
GTAAGCCATGTAATTGTGTCTCCAAATAGTTTTTGCTGGTGTGTCTTGTA
CCGTGTTTGGGGACTTACTACTGATTTATTTGTTTCTACAAACAGTAGCA
CTGGGCAGTTGATGGTTTAAAGATACTCATCTGTTTTGTGCAACGATTAT
CTCTCGGCGATTTTTCATCTCTGACCACTTTTAGTCTTGAATAGGAGGGC
TGGGCTGCTGGCTGGTAAGATATGAGGCTGTTCTCTCTGTCGTAGGCTGG
GTGTGGGTTTATGCCCATATAGTGTGTCGTAGAGTGACATTGCACTTTGG
CTGGAATGGTGTCTTGTTTAGGGAACCGAATACACATTTTTTGTCATGTT
GATTTCATGATACTCGAATTTCATACCTCTATGCACTGCATTGTAGTGTC
TGTAGGTCCGTCAGTTATCCTTCATCTGTGTACGAACGCACTGCACTATA
GTAAGGTTGGCTGCTGCCGCAGCCGTATTTTTTGGCTGCTCATGTACTCA
CAGAATGCAATGGTCCACTACAGCGGTGAACCTTCGAGACCATTGTATTT
TAAGTGGCAATTGCTTTACTTGTGACGGTGTCAAGCTCACGCACCTGGAG
ACTATCGGTGGCCAACCACACCGTCATGACGGAAACTTTCCAAATGACGT
GCCAGAGTGACATACGCGTTCGATTCGCCAAGTACGTACATGGGTATTTA
CCTAACCTTGTATGAAACATAATGTTCCGAAAATCTAATAGTTGCGTTTG
TTTATCTGACCAAGCTATCATGTTTTTGTCCACCCCAGAGTAGCACACAA
GACTCCGTCAGTCCCCACCCCCCACCGTCCGTGCGTCCCTCCCTCCCTGC
CTCTAGTTCCGCCTATTTTATGTACAGGAAAGGCGATACGCTAGTATTGC
CCGATTTGTTCATTGGTGAGAGCTTGTGGTCAAGTTTGTTACGAGACACC
TATTGGCTTTGTAAAACATCTGGATTCCGCTGCTCTGTTGAAAGGGGTGT
TATCAACCGTTTTCACAGTAGTTGCATGCCTTCGCCATTTGTTAGGAGCA
ATTAGCGTTAATAATCACCATTTTGCCACGAGATTTTCCACGTGGTTGCA
GCACGGTAGCACAATATTTCTTCGTCAATAACTTGATGCACTACTTCTTG
TGGCGATGTGATGGTCACGGGGGGGGGGGGGGTCTGATTTAGGTATGCTC
TTGTCCTTTATTCCCCTCCTGCAGTGTCATGGCCCAGTCTTCCCAAAAAA
CAAAAAATCAGGAGCAATGGAGTGCTCAGTTGGAGATCAGTGTAGTTGCT
CCAAATTCATGTTAAATTGAGACACAAGCCTACCACGCACCCACCTAGGC
TTTACCGTGAACCCCTCAACGCCAACCCCAACCCCGGCCGAATCGAATCG
ACACTACAAAACCACTCGAGGTCCCTATATCCACCGCGGCTTTGCCACCA
ACCGTGAATCTCCTCATCAACCGAAACCTAACCCTAAGTAGGGAGGGAAG
AGAGGTTATATCGTACAGACGTCGCAAGGGTGAACTCACGGGAAGACATC
GGAAGATAGGAAGTATGAACCCCGCGATTAACCCAATGTGTAGAGCCTAT
GCGCCAGACCATGACCCATACCAAGCGCCGGGCAGTTGTAGGCTTTCTCG
ATATCCCAGAAAGTAACCTAATTGGTAGACCTGCGAGAGGAGGTATGTTG
TACTGTTGCCGGAGGTCTTAATATCATCTCGTCGAGGGTGATGATGACGG
CCGCCGTGGGTGAAAGCCCCCCTTTCGAAAAATTTCACCCCCTGAAAAAA
TACAAATACTTACAAATGGTTTGTACAAATCACTGGATTTATTTGCCTGA
GTTTCAGAATGCGCTCGCGTGTTGTGTGTGCACCGGACCATCCACGACTG
GTAATAATATTCGTAAATGGAATGAACAGGGGTGGGTACTTTATTCTATG
GTCAACTCATTCTGAAACTCAGGGGACTACTTTTAGTTTTTTGTGAAAAT
CATATGCAAGTATTCGTATTTGTCCTGGGGGTGAAAGTTTTGTGCGGCTT
CCCTATCGTCTCCGAATTTATCCCGAGATTATGAATATACCGTCAAGACT
CTGCCCTCTTGACATGACCAAATTGCGGGTCTGATTTCGATTCGATGTGG
AGCATCTCTGAGTGAGTACTCGGTTTGTGGAGTTCGAGTACATCGGTTGA
CAGATATTGGAGTGTCATATTTGTACCTCACGGCAGTTAGGTACGGCCTA
CATACCCGTCTTTTTAATCTCGCGTACAGACATTGCAAGACATGACGAAC
GTAGCACCAGCGGACACCGCAGAGTCAACGAGTGGAGTATCAACAGGTGT
AGTGTGCTGGTAAATTTGAAACACAATACAGACATAGATATGTCTGACAC
AGTACACAGTCATGGTGCGGGCCATAGTGACAGACAGGTATATTGTGTGT
TCAGAAGACAACGTACAGGCAGTGCTGCGTCGTATTCTACATATTACAGT
CAGGGCTGCCTCGCACATCCTGCGTAGCCATCGTGTCGTGCGAAATGGAT
AGGGGTGTGTGACATCCGAAAAGAAGCACAGTCAGTGCATCCTCGGGCAT
GGTTTGTAGTCGTTGTGTCGCACGATGCGCGACGGGTGCGCTGTGCGTGA
CGAAGAGATCATCCGGTCAGTAGTATAACATCGGGAATGAAGATCCACAG
TTAATAGATGAGCAACGGTCGAAAGAGGCATGTTCGAAACGGGGATGCTG
TCAGGTGTCTCAGGTCCCATTTTGTGCTTGTGAGCAAGGGGCCTTACCAA
CGGAACCTACCGAACCAGGGTCCTCTATAATTAAAAAAGTGAATTCGGGA
GAAAGGTCAATGGGGAGGTACCCCGCTTTCAACGGGAGGTATCCACCCTA
AGGGCACTATATGTACTTGATAACAGTATATAACGATTTTGTTGCCGCTG
TATGCCGTGTCGTATCGTGATATTCCCATGTGCGCCTACAGCTTGGCGAT
GCGTTCTACGATCTTACGGGCTGGCGAAAGCTACACCCAGCGGGGAACCA
TTGGATCGACCGATTTGCGGTGAGCTAAAGGAGCGAGAAGGTGTACGAAG
GTCAAGCGACTATCGACCAATGGTTCGCAGGGGCAAAGGCGCGCGGGGGG
GTATAAAACCTACCAGTCCTCTCTTCATTAAACGTGATAATAGTCATGCA
AAGCCGGAGGATAATATCAATATTACTGAGGGGGTTGTCCGCGGTTTGGC
CAAGATACGACGGGGGGGTGGCGCCAGAGTACTAAAGTGCGATCGGTATG
CCGGGTAGAACTCCAGTAAACCCTTTTTGAGTGCTGTTGTCCACATTCGC
TGTGCTGAATGAAGAGGAAAAAGCAAGTGCCTATTCGTGACTTGGGTTCG
AGGATAGGGACCCACTGGCTGTTGTCCTCATACGGGTTGGATTTGGAGAG
GGGGTCGGAGAGGTACACGTTGATTTTTCTGAAGTTCTGTCTGTATTAAA
ACACTAGCAATAGCATGAAAGCCCTGGGCGATGGTTAGTGCGTGATTCTT
GAATGGTGCGGCATTTTTCATCTACCAGTCCCTGGGAGGATTTTTTCACG
GCCTTTATATTGTTGTTGTTTTTATTATTTGGCAGGAGCGTGACGCGACA
GATGTCATGGCGGCATTTCACTCGGATGAGGCGTTCGACCGGCTTAAGAC
CCTGCCTGTCGTTAGGGGAAAGGAGGCAGTGGAGCCGAATGCTGTCACGA
AGAAATTCAGGGCTTTCAGGAAAGAGCTCGTGAGTGCTAAAAAGTAGAGA
CGGTACACACACACACACACACACATATATATATATATATGATGTTTTTT
TCAAAGGGAGGTGCAACTTTTTTTTGTTTTATTGTGTTTTTTCCATACAA
TCATGGGCTTAGGTGTACTTGGCTCGCTCGCGATGCTACCGATGCTGACG
GTGAAAGTTTGGGATGGGTGCCTTGAGGTTCGTTTCGTCTTGCACTCAGT
CTCCTAGTCGCTTCAAAGCAGATATTTTGATCGCCCATTGGTGGATGATC
GCAACACTCGGCCTGATCAGTACTAACAAAACGATGGTATAAGTGATGCA
CTAAGAGGGCGGCGCGAAGACCAACGCTTGAATTCTCCGTTGCTACTTTG
CTGCGGGTGACCACACAAGACCTTGGATTCCGGCGCATAAAAACGAGATA
ATTTTTTTTCCAGAGCAATTTCTTGTGGAAGCTAACGTCATATTTGTTTT
TGCCCAGGGGTCCCAGGGGTCATGATCCAATATTTTATCATGTTGCGATT
AAGGACCGTTCTGAACGAGTGAGCCTGATTATTACGTTTCCCGATTTTAG
TCCCGAGAGTCTGCGTACAGCAACCATTTGATTCGGAAATCGTCGATGAC
AGTGTACTTTTAGAACAGTGCGGGTGCGTACTGGTCTAGCTTAGTGATAG
TGCTTGGCGCTATATAAATCCAACCAAATTCCGAAACCGTTCCGGTGACG
ACCGGATCCCCCCAGATGGTAATGGAAATGGCCATGGTCGTTATTTGGGA
ATATTTTTTCTCAAAAGTTCACTCGAGTTACTCATTCGAAACAGATCTTG
GAAACTGCAGTAAGCGGTTCAAGAAATCACAATTTGAATGAAAAGGATGC
ACTGCACGGGCGTCTGTCTGACCTAGATTACCGTAACAAAACTTGTGCGA
TGTAGTTCGAAAAAAATCCCCGTAAACACACCTCCCCTTGATCGTTCAGT
CAAATATTTGGTGAGCTTTTTGATTACTCGATTGATCATGTTGTTTGTTC
CGTATTGAACAGGTGGAGGCAGGGTGGTTTAAACGAATCTGGTACAAGGA
CGCCTTTCTGTTGGCATCTCAGCTGGGCACCTTTGCGGCGGGGATCATCC
TGACGCGCACTAATCCGTGGCTTGGGGTGATGGTGTTGGCCCTGGCGCAC
ACGACCGGAGGATGGTATGCGCACGATATGGTGCACGGCCGCGGCAAGTG
AGTGGTGAATTTGGAGTGTCCGAAATATGTGAGTGTAGATTTTTTCTAAC
TTGAACAGTAGATGGACCGCGGATGGTCATGCCAGTGGGGTACCTAGATC
CAACGTAAATCACTTTCCTTAAACTGCCCTGGATCAAGTGAACTTTCGAA
GAACGCTTATGGATGAAGGATATAGGTTGGAAACTGTTTTTAGACTGATG
TCATCATAGGCGTATGGGTAGAAAAAGCAAAGCACTTTTTTTTTGTTTTG
TAATTTAACGCAATTGAACATGTTGGTTGTGCTATCTTATAATCAACAAG
ATAAGGTCGTTCCAAGACATCGATTTTATATATATATATATATATATATA
TTTATTTATTTTTTCCTTGAGAGTTTTCGGGAAGACGGCCTGCTTTGAGC
CGGATTGTTTTTTGGAGCGTTTTGCGCGTGCGTTCTGATAACAGCACATG
TTTTTTAGAGCTCGATCTGTCCGACCAGGGGAAGTCATAGTGTGTCCATG
ATTTTTTATGAAGGGAAATATGTACTTTGTGGGGATTTGGCCGGGGTACC
GTGGAGCGTTCGCACAAGCTACGCACATCTCAACATGGGTGCGTACCAAC
CAAAATAGTCATCCTCCACCTTCTGTTGTAGTTTAGCAGGCATACTTCAC
CTTTCGAAGTTCGCTACGAGGAGTACTGTAATCTCTGTCAGAGAAAGCCT
AACGATGATTCGGTTTTATGATCACCGAGGCACATGCAGTAGTCCACGCT
ACTGTTTCCGTTTCAAGCGGTGACTGTCTTCGTTCTAGTCTTGGAATTCC
CCAGAGGGTGCACACTCTGGGGTGGAAAGGAAAGTCTTGGAATTCCCCCA
CGAGACCAACCATGGTTTTTCCAACCTTTTCGATCCTCTTGGTGCTTGTT
CACGAAGGCTTTTATATCCCATTTGTTGTCCAATCAAGTACCATCTTGCT
TCACCGACCTTCCGCTCTTTCGTTGGCGCGACAGATTCTGCAACGCGATG
CGTCACTATGGGGCGGTGACGTGCGGGCTGAGCTCCAAATGGTGGTCGGA
GAAGCATAATCTTCACCACGCCTTTACTAATGTGGTGGGAGTTGACGAGG
ACATCATGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2444:14533..20943+

>mRNA_H-paniculata_contig2444.6619.1 ID=mRNA_H-paniculata_contig2444.6619.1|Name=mRNA_H-paniculata_contig2444.6619.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig2444:14533..20943+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTGCAGCAGCCACGGGATGCGAGGCCTTTACATTCAGCGCACTCCCATC
TGTGCGCCATGCTCCATCGAATCGAAGAAGCTCGACGAGCATGGTGGCTT
CAGTGTCCAAGGTGGGATCGGTGGGTGCTCCCACCACGGCGCCATCCACA
GGTGTTGGCGCGGGCAAACGACTTCATGTCCAGGCTGCAGCAGCCACGGG
ATGCGAGGCCTTTACATTCAGCGCACTCCCATCTGTGCGCCATGCTCCAT
CGAATCGAAGAAGCTCGACGAGCATGGTGGCTTCAGTGTCCAAGGTGGGA
TCGGTGGGTGCTCCCACCACGGCGCCATCCACAGGTGTTGGCGCGGGCAA
ACGACTTCATGTCCAGCTTGGCGATGCGTTCTACGATCTTACGGGCTGGC
GAAAGCTACACCCAGCGGGGAACCATTGGATCGACCGATTTGCGCTTGGC
GATGCGTTCTACGATCTTACGGGCTGGCGAAAGCTACACCCAGCGGGGAA
CCATTGGATCGACCGATTTGCGGAGCGTGACGCGACAGATGTCATGGCGG
CATTTCACTCGGATGAGGCGTTCGACCGGCTTAAGACCCTGCCTGTCGTT
AGGGGAAAGGAGGCAGTGGAGCCGAATGCTGTCACGAAGAAATTCAGGGC
TTTCAGGAAAGAGCTCGAGCGTGACGCGACAGATGTCATGGCGGCATTTC
ACTCGGATGAGGCGTTCGACCGGCTTAAGACCCTGCCTGTCGTTAGGGGA
AAGGAGGCAGTGGAGCCGAATGCTGTCACGAAGAAATTCAGGGCTTTCAG
GAAAGAGCTCGTGGAGGCAGGGTGGTTTAAACGAATCTGGTACAAGGACG
CCTTTCTGTTGGCATCTCAGCTGGGCACCTTTGCGGCGGGGATCATCCTG
ACGCGCACTAATCCGTGGCTTGGGGTGATGGTGTTGGCCCTGGCGCACAC
GACCGGAGGATGGTATGCGCACGATATGGTGCACGGCCGCGGCAAGTGGA
GGCAGGGTGGTTTAAACGAATCTGGTACAAGGACGCCTTTCTGTTGGCAT
CTCAGCTGGGCACCTTTGCGGCGGGGATCATCCTGACGCGCACTAATCCG
TGGCTTGGGGTGATGGTGTTGGCCCTGGCGCACACGACCGGAGGATGGTA
TGCGCACGATATGGTGCACGGCCGCGGCAAATTCTGCAACGCGATGCGTC
ACTATGGGGCGGTGACGTGCGGGCTGAGCTCCAAATGGTGGTCGGAGAAG
CATAATCTTCACCACGCCTTTACTAATGTGGTGGGAGTTGACGAGGACAT
CATGGTGATTCTGCAACGCGATGCGTCACTATGGGGCGGTGACGTGCGGG
CTGAGCTCCAAATGGTGGTCGGAGAAGCATAATCTTCACCACGCCTTTAC
TAATGTGGTGGGAGTTGACGAGGACATCATGGTG
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