mRNA_H-paniculata_contig2444.6617.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2444.6617.1
Unique NamemRNA_H-paniculata_contig2444.6617.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: D7FSV6_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV6_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 4.110e-119
Identity = 188/221 (85.07%), Postives = 200/221 (90.50%), Query Frame = 1 
Query:    1 QEGIFQALPFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            +EG+FQALPFPVRITVMGGGNFGLALSLVLARNQ     IPTTLLVR+  VAEHVN H EHP YLKGIK+P  + ATADPKEAL+DAT++IHAVPVQYTRKFLE VVPHMP G PILSVSKGIETSSLMLMNDILK+ CG  RSYAFLSGPSFAREIAMNQATAVVIASDDS LAND A+VLSSP+FRCFTS+DVVGVEVGGAVKNVIALAAGMCEGLGLG
Sbjct:  272 REGLFQALPFPVRITVMGGGNFGLALSLVLARNQ-----IPTTLLVRSDSVAEHVNKHNEHPNYLKGIKLPQHIVATADPKEALRDATFVIHAVPVQYTRKFLENVVPHMPAGTPILSVSKGIETSSLMLMNDILKDLCGTERSYAFLSGPSFAREIAMNQATAVVIASDDSCLANDMAKVLSSPTFRCFTSKDVVGVEVGGAVKNVIALAAGMCEGLGLG 487
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BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: A0A835YU39_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU39_9STRA)

HSP 1 Score: 308 bits (790), Expect = 2.220e-102
Identity = 160/214 (74.77%), Postives = 181/214 (84.58%), Query Frame = 1 
Query:   22 LPFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            +P+PVR T++GGGNFGLALS VLARN      IP+TLL+R   +AEH+N H EHP YLKGIK+P  + AT D K+AL+DATY+IHAVPVQY+R FL+KV  ++PPGAPILSVSKGIETSSL LM DIL ETCG  RSYAFLSGPSFAREIA N ATAVVIASDDS LAND A +LSSPSFRCFTS+DV+GVEVGGAVKNVIA+AAGM EGLGLG
Sbjct:    1 MPYPVRFTILGGGNFGLALSHVLARN-----GIPSTLLLRNAEIAEHINVHHEHPTYLKGIKLPWHIRATTDAKDALQDATYVIHAVPVQYSRAFLKKVASYIPPGAPILSVSKGIETSSLSLMTDILAETCGPERSYAFLSGPSFAREIAQNMATAVVIASDDSQLANDLANLLSSPSFRCFTSKDVIGVEVGGAVKNVIAIAAGMSEGLGLG 209
[Close]
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: A0A7S3V808_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V808_9STRA)

HSP 1 Score: 273 bits (698), Expect = 1.420e-88
Identity = 142/213 (66.67%), Postives = 171/213 (80.28%), Query Frame = 1 
Query:   25 PFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            P+PVR+TVMGGGNFGLAL+ V+ARN     +IPTTLL+R Q +A+ +N    HP+Y+  I +P  +HATADP+ AL DATY+IHAVPVQ+TRKFL+ V  ++P   P+LS SKGIET+SL  M DILKE  G  RSYAFLSGPSFAREI  N ATAVVIAS+D  LA+D A++LSS +FR FTS+DV+GVEVGGA+KNVIALAAGMCEGLGLG
Sbjct:   88 PYPVRVTVMGGGNFGLALATVVARN-----NIPTTLLIRDQDIADQLNLEHRHPRYMSDISLPKMIHATADPESALSDATYIIHAVPVQFTRKFLDSVKEYIPKNVPVLSGSKGIETTSLGFMMDILKECLGDDRSYAFLSGPSFAREICENVATAVVIASEDLMLADDLADILSSENFRVFTSKDVMGVEVGGAMKNVIALAAGMCEGLGLG 295
[Close]
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: A0A7S3Q1I8_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1I8_9STRA)

HSP 1 Score: 273 bits (698), Expect = 3.280e-87
Identity = 142/213 (66.67%), Postives = 171/213 (80.28%), Query Frame = 1 
Query:   25 PFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            P+PVR+TVMGGGNFGLAL+ V+ARN     +IPTTLL+R Q +A+ +N    HP+Y+  I +P  +HATADP+ AL DATY+IHAVPVQ+TRKFL+ V  ++P   P+LS SKGIET+SL  M DILKE  G  RSYAFLSGPSFAREI  N ATAVVIAS+D  LA+D A++LSS +FR FTS+DV+GVEVGGA+KNVIALAAGMCEGLGLG
Sbjct:   88 PYPVRVTVMGGGNFGLALATVVARN-----NIPTTLLIRDQDIADQLNLEHRHPRYMSDISLPKMIHATADPESALSDATYIIHAVPVQFTRKFLDSVKEYIPKNVPVLSGSKGIETTSLGFMMDILKECLGDDRSYAFLSGPSFAREICENVATAVVIASEDLMLADDLADILSSENFRVFTSKDVMGVEVGGAMKNVIALAAGMCEGLGLG 295
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BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: B7FQ11_PHATC (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ11_PHATC)

HSP 1 Score: 264 bits (675), Expect = 7.540e-85
Identity = 138/213 (64.79%), Postives = 167/213 (78.40%), Query Frame = 1 
Query:   25 PFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            P+PVRITVMGGGNFGLAL+ V AR       IPTTLLVR+  +A+ +N++  HP+Y+K I +P  + AT+DP++AL DATY++HAVPVQY+R FL+ V   + P  P+LS SKGIETSSL  M DILKE+ G  R YAFLSGPSFAREI    ATAVV+AS+D  LA D A++LS  +FRCFTSRDV+GVE+GGAVKNVIALAAGMCEGLGLG
Sbjct:    8 PYPVRITVMGGGNFGLALATVAARK-----GIPTTLLVRSDDIAQSINTNHTHPRYMKDIVLPARIRATSDPEKALSDATYIVHAVPVQYSRAFLDSVKEFIAPNTPVLSGSKGIETSSLGFMADILKESLGRDRPYAFLSGPSFAREICEGVATAVVVASEDLMLARDLADLLSDDNFRCFTSRDVMGVEIGGAVKNVIALAAGMCEGLGLG 215
[Close]
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: B8BQG6_THAPS (Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQG6_THAPS)

HSP 1 Score: 264 bits (674), Expect = 1.250e-84
Identity = 139/216 (64.35%), Postives = 164/216 (75.93%), Query Frame = 1 
Query:   16 QALPFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            Q  P+PVR+TV+GGGNFGLAL+ V+A+       +PTTLLVR++ VA H+N +  HP+Y+  I +P  V AT D K AL DATY+IHAVPVQYTR+FL  V   +PP  P+LS SKGIETSSL  M DILKE  G  RSYAFLSGPSFAREI    ATAVVIAS+D  LA+D A+++S   F  FTSRDV+GVEVGGAVKNVIA+AAGMCEGLGLG
Sbjct:    9 QPPPYPVRVTVLGGGNFGLALATVVAKK-----GVPTTLLVRSEDVASHINENHRHPRYMSDICLPRMVRATCDKKSALSDATYIIHAVPVQYTREFLNSVKDDIPPNVPVLSASKGIETSSLGFMADILKECLGEDRSYAFLSGPSFAREICEGVATAVVIASEDLMLADDLADLMSGEDFAVFTSRDVIGVEVGGAVKNVIAIAAGMCEGLGLG 219
[Close]
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: A0A1Z5J7B2_FISSO (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7B2_FISSO)

HSP 1 Score: 265 bits (677), Expect = 1.500e-84
Identity = 138/213 (64.79%), Postives = 165/213 (77.46%), Query Frame = 1 
Query:   25 PFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            P+PVRI VMGGGNFGLALS + AR        PTT+LVR Q +A+ +N++  HP+Y++ +K PP + AT +P++ L DATY++HAVPVQY+RKFL  V  ++PPG P+LS SKGIETSSL  M DILKET G  R YAFLSGPSFAREI    ATAVVIAS+D  LA D A +LS  +FR FTSRDV+GVE+GGAVKNVIALAAGMCEGLGLG
Sbjct:   54 PYPVRIAVMGGGNFGLALSSISARK-----GFPTTILVREQEIADSINTNHTHPRYMRDVKFPPTLRATTNPQDCLPDATYIVHAVPVQYSRKFLNSVKDYIPPGTPVLSGSKGIETSSLGFMADILKETLGEERPYAFLSGPSFAREICEGVATAVVIASEDLLLARDLATLLSDGNFRVFTSRDVIGVEIGGAVKNVIALAAGMCEGLGLG 261
[Close]
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: A0A7S2A6H2_TRICV (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6H2_TRICV)

HSP 1 Score: 263 bits (671), Expect = 1.670e-83
Identity = 139/213 (65.26%), Postives = 162/213 (76.06%), Query Frame = 1 
Query:   25 PFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            P+PVR+ VMGGGNFGLAL+ VL R       IP TLLVR   VAE +NS   HPQY+  I +P  + AT DP  AL DATY++HAVP QY+R+FL  V  H+PP AP+LS SKGIET+SL  M DIL++  G  RSYAFLSGPSFAREI    ATAVV+ASDDS LA+D A++ S+ +FR FTS+DVVGVEVGGAVKNVIALAAGMCEGLGLG
Sbjct:   63 PYPVRVAVMGGGNFGLALAAVLGRK-----GIPVTLLVRKDTVAESINSKHSHPQYMTDITLPVTIRATTDPATALSDATYVVHAVPCQYSREFLMSVKDHVPPSAPVLSASKGIETTSLGFMADILRDCLGEQRSYAFLSGPSFAREICEGVATAVVVASDDSLLADDLADLFSTENFRVFTSKDVVGVEVGGAVKNVIALAAGMCEGLGLG 270
[Close]
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: A0A7S2W202_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2W202_9STRA)

HSP 1 Score: 260 bits (665), Expect = 1.550e-82
Identity = 136/212 (64.15%), Postives = 164/212 (77.36%), Query Frame = 1 
Query:   28 FPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGLG 663
            +PVR+ VMGGGNFGLAL+ V AR       IPTTLLVR   VA+ +N   +HP+Y+  + +P  + AT DP+ AL+DATY+IHAVP QY+RKFLE +   +PPG P+LS SKGIET+SL  M DIL+E  G+ RSYAFLSGPSFAREI    ATAVVIAS+D  LA+D A  +SS SFRCFT++DV+GVEVGGAVKNVIAL+AGMCEGLGLG
Sbjct:   68 YPVRVAVMGGGNFGLALATVTARK-----GIPTTLLVRDGDVADRLNEEHKHPRYMTDVILPNLIRATVDPRTALQDATYIIHAVPCQYSRKFLENIASEVPPGVPVLSASKGIETTSLGFMADILRECLGSDRSYAFLSGPSFAREIVDGVATAVVIASEDLLLADDLAVAMSSDSFRCFTTKDVMGVEVGGAVKNVIALSAGMCEGLGLG 274
[Close]
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Match: A0A7S2EWB9_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EWB9_9STRA)

HSP 1 Score: 256 bits (653), Expect = 3.280e-82
Identity = 130/211 (61.61%), Postives = 164/211 (77.73%), Query Frame = 1 
Query:   28 FPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQGVAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTRKFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSGPSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEVGGAVKNVIALAAGMCEGLGL 660
            +PVR+ VMGGGNFGLAL+ V+AR       +P  LLVR++ VA ++N++  HP+Y+  IK+P  + AT DP  AL DATY+IHAVP QY+R+FL+ +  H+PP  PILS SKGIETSSL  MNDILK+  G  RSYAFLSGPSFAREI    ATAVVIAS+D  LA+D A++L+  +FR FTS+DV+GVE+GGAVKNVIALAAG+CEG+G+
Sbjct:   94 YPVRVAVMGGGNFGLALASVVARK-----GVPVQLLVRSESVANYLNTNHTHPRYMSDIKLPTAIRATTDPDTALSDATYIIHAVPCQYSREFLDSIKEHIPPSTPILSASKGIETSSLGFMNDILKDCLGEERSYAFLSGPSFAREICEGVATAVVIASEDMDLADDLADLLTCDNFRVFTSKDVIGVEIGGAVKNVIALAAGVCEGVGV 299
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2444.6617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSV6_ECTSI4.110e-11985.07Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A835YU39_9STRA2.220e-10274.77Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S3V808_9STRA1.420e-8866.67Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S3Q1I8_9STRA3.280e-8766.67Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
B7FQ11_PHATC7.540e-8564.79Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
B8BQG6_THAPS1.250e-8464.35Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragm... [more]
A0A1Z5J7B2_FISSO1.500e-8464.79Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
A0A7S2A6H2_TRICV1.670e-8365.26Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S2W202_9STRA1.550e-8264.15Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
A0A7S2EWB9_9STRA3.280e-8261.61Glycerol-3-phosphate dehydrogenase [NAD(+)] (Fragm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2444contigH-paniculata_contig2444:563..7041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.9
Seed ortholog evalue1.3e-98
Seed eggNOG ortholog2880.D7FSV6
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryother localisation
EggNOG free text desc.glycerol-3-phosphate catabolic process
EggNOG OGsCOG0240@1,KOG2711@2759
Ec32 ortholog descriptionGlycerol-3-phosphate dehydrogenase
Ec32 orthologEc-19_001930.1
EC1.1.1.8
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons6
Model size663
Cds size663
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2444.6617.1prot_H-paniculata_contig2444.6617.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2444 563..7041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.8367193-CDS-H-paniculata_contig2444:562..6851622929706.8367193-CDS-H-paniculata_contig2444:562..685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 563..685 -
1691480975.683383-CDS-H-paniculata_contig2444:562..6851691480975.683383-CDS-H-paniculata_contig2444:562..685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 563..685 -
1622929706.8539755-CDS-H-paniculata_contig2444:1849..19431622929706.8539755-CDS-H-paniculata_contig2444:1849..1943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 1850..1943 -
1691480975.6987605-CDS-H-paniculata_contig2444:1849..19431691480975.6987605-CDS-H-paniculata_contig2444:1849..1943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 1850..1943 -
1622929706.871277-CDS-H-paniculata_contig2444:4719..48501622929706.871277-CDS-H-paniculata_contig2444:4719..4850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 4720..4850 -
1691480975.707215-CDS-H-paniculata_contig2444:4719..48501691480975.707215-CDS-H-paniculata_contig2444:4719..4850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 4720..4850 -
1622929706.8855855-CDS-H-paniculata_contig2444:5475..55911622929706.8855855-CDS-H-paniculata_contig2444:5475..5591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 5476..5591 -
1691480975.7159889-CDS-H-paniculata_contig2444:5475..55911691480975.7159889-CDS-H-paniculata_contig2444:5475..5591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 5476..5591 -
1622929706.899662-CDS-H-paniculata_contig2444:6291..63731622929706.899662-CDS-H-paniculata_contig2444:6291..6373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 6292..6373 -
1691480975.7269804-CDS-H-paniculata_contig2444:6291..63731691480975.7269804-CDS-H-paniculata_contig2444:6291..6373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 6292..6373 -
1622929706.917798-CDS-H-paniculata_contig2444:6924..70411622929706.917798-CDS-H-paniculata_contig2444:6924..7041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 6925..7041 -
1691480975.7350285-CDS-H-paniculata_contig2444:6924..70411691480975.7350285-CDS-H-paniculata_contig2444:6924..7041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2444 6925..7041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2444.6617.1

>prot_H-paniculata_contig2444.6617.1 ID=prot_H-paniculata_contig2444.6617.1|Name=mRNA_H-paniculata_contig2444.6617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=221bp
QEGIFQALPFPVRITVMGGGNFGLALSLVLARNQARTSSIPTTLLVRTQG
VAEHVNSHREHPQYLKGIKIPPCVHATADPKEALKDATYMIHAVPVQYTR
KFLEKVVPHMPPGAPILSVSKGIETSSLMLMNDILKETCGAGRSYAFLSG
PSFAREIAMNQATAVVIASDDSSLANDFAEVLSSPSFRCFTSRDVVGVEV
GGAVKNVIALAAGMCEGLGLG
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mRNA from alignment at H-paniculata_contig2444:563..7041-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2444.6617.1 ID=mRNA_H-paniculata_contig2444.6617.1|Name=mRNA_H-paniculata_contig2444.6617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6479bp|location=Sequence derived from alignment at H-paniculata_contig2444:563..7041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGGGAATATTCCAGGCTTTGCCTTTTCCTGTGCGCATTACGGTCAT
GGGCGGGGGCAACTTCGGACTCGCGCTCAGCCTCGTGCTGGCGAGGAATC
AGGCAAGGACCTCTTCTGTATTGTTTTATTATGACGGTAGCAGCAGGCCG
TCTGCGTTGGTAAAAGCGTAGACGATAGTCGTACGTTCGATGTAGTCGAC
GAATGAGTTCGAGCGAAGGTATATACGTATCATTGCCATCGCGATAGTTT
GCTTTTTTGGGGTGAGCAGAGGAGGGGGAAGGCGGGGTTGGAGTGGATAT
TTTTTTTGACGTGTTTTTTGCTGCTCCCTGTGGTTTAGCGATCTCGTATA
TCGCGAGTATCAGAAGCTTTCCCCCCCGACCTTTTTAAAGAGGCTACCAT
ATTGACTTTCCATGTCTATTACTCGCTCTCCATCTGTCCTTCCTTCGCCC
TTCCGTACCACACACCAGCAAGTACGTGCAGTAAGTTTGTTGTTTATACG
TGCCCCTTTCATGATCAAGCTTCCCCCCCCGTCCGACGTCATTTGCTAAC
CCTCAGCCCAGACAGAGAGCCAGCCAGCCCGTGTACCTTCTCGTAGGACT
CATTTACCTGTCTTGCAGCTTACTTTTATTGACTTGCCTTGATTTGTCAC
ATAAAACACACAACGCAGATCCCAACAACGCTCTTGGTGCGAACCCAAGG
TGTGGCCGAGCACGTGAACAGTCACCGCGAGCACCCCCAGTACCTCAAAG
GTAGGTTTGCGTACGTGGCTGCGCCGGTCGGTGTGTTCGAGGCAGCCAGG
TAGCCAGGCCATGCGTATCGTTAGCGTCAGTTCATGGTAGATCTCGTAAG
TTGCTTTTCCCGTGATCGTCCTTTTTTGTTGCGCACCATCTGCTGCATGA
TGGAATGTAGGAGTACTGTATGTAAGATCACAGATCACACACAGCTCATG
TAGTGTATGGGTTTTCATCTATTGTGTGTTAGTTGGGTCTATTACCGATA
TGCCAATCGTTGATACATTATTGAACCTTGCGGTTTCTGCTTTCATGTTG
TCGTGAAGCTCTCGAGTTTGGCGAAAAGGGTTTCGATTTTTTTTTTATTA
TATATCATCCCGCGATAGGAGAAGAATCGGTCGCGTTGGCTTGGTAATTC
CCATCCCCATCGTGAATGCATCGCGATGGGAGAGGATCGATTGATTATCC
GTAGCTCTATGTTATAACTAGTTACCCACCCTTTTTTGAAGAATTTTCGG
GTGACCAAGATGGTGGACGAGGTTGGTGCATGCCGGCCACAATTGAAACG
GGTTCGCGGTTCCGGTTGAGTTCTGTTTCATTCGTTTTTAGGTTTCACGT
ATCTGTGTTCGCGGTAGGTTCTTCGTTGTGTCTGCAGCTTACGGCTGGGT
CGATCGCTGGTCGTGAGCATCTTGTTTCCAACTTTTGTCTGGCATGGCAG
GCATCAAGATTCCACCGTGTGTTCACGCTACGGCGGATCCGAAGGAGGCG
CTTAAGGATGCTACGTACATGATACACGCGGTGCCCGTACAGTACACCCG
AAAGTTCCTGGAAAAGGTAACAAAGCTGGCCGGCCGTGATGACGCTCTTG
AGCTGTTCTAACGTGGGATCACTGTAATTGCGAAATCGCTGCATGACTGA
ATCGTAAGTAGTTCGAAGAAAAAGACAACCCCGTAGAGGAATAAATGACT
CTGTTCTGTTAAAGGAAATGTAGAAATACTTTGATAAAATACTTAAGTAT
GGAATCATCGATGAAGGGTTTTGCCTCAGCCTTCCGGGGGGTGGAAAAAA
AAAAAAATTGGCAAAATGTTTTTTTATCGTTACACAAAACACGGGCCCCG
AGTGTGTCGTGCATTTCTTCATTCTAGCATGTTTTCGCCAATTTGTAACG
ACAGACGGTAGAGTACTGGGTGGCGTGTCATTTACCAAGGCAACGCGTCG
TTCGCGTTGCCGGCACGCAATATGTTGGGTTGGCAACGCGCTACATGTAT
GCCGCTCGTAATACCTTTAATTGCAGTGCTCTGTTCCGTTTGTAGATATT
CCGCCACGTAAACAATATATTTTTCTCCTTTTCCCGCCATTCCAATGCAA
GCTGCTGTGTGTGTTACGCTGTTCGGGGCGGGGTGGGGCTGCTATCTGTC
GTTCTGGTGGGGTGATGCGGTATGTGCGATTGCGAACACAGGTGGTGCCG
CACATGCCGCCGGGCGCGCCAATCCTGTCAGTGTCCAAGGGCATCGAAAC
GTCGTCGTTGATGCTGATGAACGATATTTTGAAGGAGACGTGTGGGGCGG
GGCGTTCTTATGCCTTTCTCAGGTGAAATATGTTGCGCACAGTTAGTTAC
CAGTGTGGATTGTTTGGGGCGAGAAATGCAGACTACCTCCTTGCTCATGT
GACGTGAAAGTGTTGAGAGGTCCTTCGACTTCGAAGCAAGTCTTTTTTTC
TATTGGAGTTGTCCCCGCCCCCCCATCCAACGATACGCAGAAACAGCAGC
AGCAACATCAACAACCCTCCAACAAACCAAAAAATTGTTTCGATACAGGG
ACGTTAATTACTGCCTCCGTGTACACATGAAAAATGTGACCGATAAAGGA
AACGCCCGTTCAGGATATACGTATTTTTTTAAGCGTCATCATCCCGCCAT
TAGAGTACACAGGAGACGTATAGGAAGGGAACAAGAAGACAGCCAAGAAG
TTCGGAGTAGTTTCTGAAAGAAGTAGCGAAGGTGACATTGTGATACGGGC
AAAATGACAGAAACAGGTATATCTGGACAATTTTGAGCCAAAAAAAGATA
CAGAACACATCACCATATAAAATGCCCCATTTCCAGCAATATGATTGGCT
GAAACAGTTGTAGAACTGTCTGTAACTGCTACTGTCGTAGTTACCCCCTG
TTTCAGACTTCTTTTTCCCCCGACAGGCGTACCCGACCCAGGCATTTACA
CTGTTTTTGCCGGAAATTGTACGCGGTTCGGGGCGATTTCCAAGAAGACA
ACATACCAGCATTTACGCCACTGCAACAGTGGCAAAACAACAATTGTCAA
TTTTATTCCTCTCCCTTCCCACGACAGGCGATCCTCGAAAAGTAGCCCGG
ACCACAACACATTAGTCCGTATCTGTTCCGATTTCTGATCCCGAATTATG
ATTCTTCGAGGATAAAATAGGTCGATGCATGTTGTGGTACACAGTGTACC
CGCGGAAGAGCCGCAACGGATAACCCTTGCTCGGACAAGCACAAACAGGC
CCAAAGAAGGCAAAATCTCTCCGACAACTATAAAATTCTTCTATAGTATC
CGTGACGGCAACAACATTCACAACGACGGCAGCGAAAGACATCACGACGG
CAAAACAACTGATAGTATCACATATCCTCCTGCCACCACTTTTAATGGGT
TCTTACAAGGCACACGAGAAATGTATCACCCGTTGGGTCATTGAACGCCC
TCCCCTGTTCCTGTTGCCCTTCCCTGAGTCAATTAACAAACATTGCTGTG
TAGTAGTACAGTATGTATAGTACGGTATCGTGTTTTACGCTTAAACTTGT
TGGGGTTGTGTGATTCGGTTTGTGAAACGGTTTCATTTGGGGCAACGTGC
CTCGATATTCTTGCGCCATACAGTGATAGCTGTGCAAGTGCATATCTATG
TGCTGTACCGTTCCGTATATTACAGTATGTATGGTACGTACTGCATGCAT
ATCGTAGAAGTGGAGGGAGGATATGTGATACTATCAGTTGTTTTGCCGTC
GTGATGTCTTTCGCTGCCGTCGTTGTGAATGTTGTTGCCGTCACGGATAC
TATAGAAGACTTTTATAGTTGTCGGAGAGATTTTGCCTTCTTTGGGCCTG
TTTGTGCTTGTCCGAGCAAGGGTTATCCGTTGCGGCTCTTCCGCGGGCAC
ACTGTGTACCACAACAACATGCATCGACCTATTTTATCCTCGAAGAATCA
TAATTCGGGATCAGAAATCGGAACAGATACGGACTAATGTGTTGTGGTCG
GGGCTACTTTTCGAGGATCGCCTGCCGTGGGAAGGGAGAGGAATAAAATT
GACAATTGTTGTTTTGCCACTGTTGCAGTGGCGTAAATGCTGGCATGTTG
TCTTCTTGGAAATCGCCCCGAACCGCGTACAATTTCCGGCAAAAACAGTG
TAAATGCCTGGGTCGGGTACACCTGTCGGGGGAAAAAGAAGTCTGAAACA
GGGGGTAACTACGACAGTAGCAGTCACAGACAGTTCTGCAGCTGTTTCAG
CCAATCATATTGCTGGAAATGGGGCATTTTATATGGTGATGTGTTCTGTA
TCTTTTTTTGGCTCAAAATTGTCCAGATATACCTGTTTCTGTCGTTTGTC
CTTAGCATATTCGCAGCGCACTAGCAGTGTAGCAGGAAGGGCAGACTTAG
ACATACGCTCCCTGAAAAGCCGAGAGAGAAGTGAGGAAGTCTAAGCGGAA
AAACATTGTGCACAAAATGGGAGAGAGGATACTGCCAGAAGTGCGAGAAA
AGCCTTGTGAAAATCATTATGAAAGGGTAGACTACCCACTGAATGGATTC
CCGTAGCAAAAGGTGTGGGAATAATTGGAATTTTCGAAGGAGGAGGTGAC
GACTGCAGTTGCAGTCAGAGAAAACAAGAGCGAGACATTGACCTTCGTGC
TGCCCCATGACACTAGAATCTCTCAAGCTCGTGTGCTGTGGAGATCATTG
AGCACGGTACCTTCCCAGCTACTACCGCACGGTATTTTTTCAATCTCGTG
AGGTTTTCATCAACTGGTGCCAACATGAGAGCAGCAGTTCCAGCGCACCA
AGCAGGGCAGGTCGCATGTCGAGTGTATTGTTGCCTTTTTTTCCATTTTA
TGTCTTTCCCGATGGCCATACTGTCGTGGCTCTTTTTGTTACGGATGTTC
TAATTTATATCTCAAAACTTGCGTTTTTCCGTGTCTCTTGGCTGCGCTGC
ATATCCTTTGTGTGTGACGGTTACGCTGGTGGTCCGGCTAATGCTGCTGA
CGATTATGTTGTTTTGGCTATTTGCGTCACGTTTTCCTGATGCGGTGGGC
GGGCTGCCGTCGTTCGTCGTCGTTTCGTCATGGTCCATAATTCGTCAGCG
GCCCTTCTTTCGCGCGAGAGATCGCGATGAACCAAGCCACAGCGGTCGTG
ATCGCGAGCGATGACTCGTCCCTCGCAAACGACTTCGCCGAGGTGTGTAT
ACGTGTCTCACGTGTATTGCGTTGTTCGTGTATTTGGTGTCACTTTTCAA
GGATGGGCGAGTTCTTGTCTCGTTCGCAAATATGTCCACGCTAATCCAGT
CCCGTGGTTTCGCTCACATACGTGTCCACATGGTATATATAGCAGGTGAA
GTGTTGGATTTAAATGCCCGGCTGGAAAATGACACTGTGACGTTCAACTG
CAACGCTCCACGAGTCAGACGCTAATTTTAGCCGCCGCATTTCATGTTTT
ACTCAATATAGTAAGTAAGCTTGGGAAAAAAATAACCAAGGGCAAAAATA
ATACGCAAGGCCAAGGCGAAATCAGGTAATGGTGTGTCTCTGTGTGTGTT
TGTAGTTTATCCTCAGTTATATCAAGTCTTCTGATGCGCAACGCACATGT
ATTCGGCCGTCACTGTTGGCTACATTACCTCAGCGTCTACTTGTGCTATT
AGTGGTAAAATGAAAAAGTAGGGAAGACCCTTAATTTTCCTTGCCCCCCC
CCACCGCTCGCCCCCTTCTTGTGGTCAATCTTTTGACAAGTAATTCAAAC
CGTAAGTACGCTTATCACACATCCGGTTTACTCGACGGTATTATCATGTT
TTGTCATGTATATTCTTAAACTTTCTCCCCACCCCCTCCCCCTCCCCCAG
TTGAAAGTCAAATTTAGGACGGGCGATGATGCTCTCAAGGAACGTAGGAT
ATGATTCAGGGAAGCAGATGAGGACGAGGACGATGTGTTCAAGTGTGACT
GTGGTAGTGCGTGGGAGGACCGAATTCATACGGTGGGAGAAAGCCCCCTA
TATGATGAAGAGAGAGAAGTTACTCTTAAGAGGATCAGGGAATATCGAAG
GATGCGATAGAGAGACGTTTGAAGTCTGGGGTTTCGAAGAAAAGGCTACA
GTGGTTCGAGGAAATGAACATTGGCCTGGGCACGCGAGGGCCGACGAAGA
TAGGGCAGGTGGAACATGTTCGAGCTACACTTGCAATCTAGGAAAGAGCC
ATTGACCATCAGAAATATCTCTGATTAGAACGAATCTCTGCTCTCCGAGG
ACGCGTGCTCAACGGCCTAACAACTATAGCATACAAAAAATGGGTACACT
ACTCCCCCCACCGTCCACCACGTACCCTCTTTTTGCCCAAATTGTGTTGT
GGCTAGGTTCTGTCATCGCCGTCGTTCCGATGCTTCACGTCTAGGGATGT
CGTTGGGGTGGAGGTGGGCGGAGCCGTGAAGAACGTGATTGCTCTGGCGG
CCGGCATGTGCGAGGGCTTGGGATTAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2444:563..7041-

>mRNA_H-paniculata_contig2444.6617.1 ID=mRNA_H-paniculata_contig2444.6617.1|Name=mRNA_H-paniculata_contig2444.6617.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1326bp|location=Sequence derived from alignment at H-paniculata_contig2444:563..7041- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAGGGAATATTCCAGGCTTTGCCTTTTCCTGTGCGCATTACGGTCAT
GGGCGGGGGCAACTTCGGACTCGCGCTCAGCCTCGTGCTGGCGAGGAATC
AGGCAAGGACCTCTTCTCAGGAGGGAATATTCCAGGCTTTGCCTTTTCCT
GTGCGCATTACGGTCATGGGCGGGGGCAACTTCGGACTCGCGCTCAGCCT
CGTGCTGGCGAGGAATCAGGCAAGGACCTCTTCTATCCCAACAACGCTCT
TGGTGCGAACCCAAGGTGTGGCCGAGCACGTGAACAGTCACCGCGAGCAC
CCCCAGTACCTCAAAGATCCCAACAACGCTCTTGGTGCGAACCCAAGGTG
TGGCCGAGCACGTGAACAGTCACCGCGAGCACCCCCAGTACCTCAAAGGC
ATCAAGATTCCACCGTGTGTTCACGCTACGGCGGATCCGAAGGAGGCGCT
TAAGGATGCTACGTACATGATACACGCGGTGCCCGTACAGTACACCCGAA
AGTTCCTGGAAAAGGCATCAAGATTCCACCGTGTGTTCACGCTACGGCGG
ATCCGAAGGAGGCGCTTAAGGATGCTACGTACATGATACACGCGGTGCCC
GTACAGTACACCCGAAAGTTCCTGGAAAAGGTGGTGCCGCACATGCCGCC
GGGCGCGCCAATCCTGTCAGTGTCCAAGGGCATCGAAACGTCGTCGTTGA
TGCTGATGAACGATATTTTGAAGGAGACGTGTGGGGCGGGGCGTTCTTAT
GCCTTTCTCAGGTGGTGCCGCACATGCCGCCGGGCGCGCCAATCCTGTCA
GTGTCCAAGGGCATCGAAACGTCGTCGTTGATGCTGATGAACGATATTTT
GAAGGAGACGTGTGGGGCGGGGCGTTCTTATGCCTTTCTCAGCGGCCCTT
CTTTCGCGCGAGAGATCGCGATGAACCAAGCCACAGCGGTCGTGATCGCG
AGCGATGACTCGTCCCTCGCAAACGACTTCGCCGAGCGGCCCTTCTTTCG
CGCGAGAGATCGCGATGAACCAAGCCACAGCGGTCGTGATCGCGAGCGAT
GACTCGTCCCTCGCAAACGACTTCGCCGAGGTTCTGTCATCGCCGTCGTT
CCGATGCTTCACGTCTAGGGATGTCGTTGGGGTGGAGGTGGGCGGAGCCG
TGAAGAACGTGATTGCTCTGGCGGCCGGCATGTGCGAGGGCTTGGGATTA
GGTGTTCTGTCATCGCCGTCGTTCCGATGCTTCACGTCTAGGGATGTCGT
TGGGGTGGAGGTGGGCGGAGCCGTGAAGAACGTGATTGCTCTGGCGGCCG
GCATGTGCGAGGGCTTGGGATTAGGT
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