mRNA_H-paniculata_contig24438.6616.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24438.6616.1
Unique NamemRNA_H-paniculata_contig24438.6616.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24438.6616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24438contigH-paniculata_contig24438:3313..3793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size481
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24438.6616.1prot_H-paniculata_contig24438.6616.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24438 3478..3786 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.6750357-UTR-H-paniculata_contig24438:3312..34771622929706.6750357-UTR-H-paniculata_contig24438:3312..3477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24438 3313..3477 +
1691480975.611582-UTR-H-paniculata_contig24438:3312..34771691480975.611582-UTR-H-paniculata_contig24438:3312..3477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24438 3313..3477 +
1622929706.7124622-UTR-H-paniculata_contig24438:3786..37931622929706.7124622-UTR-H-paniculata_contig24438:3786..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24438 3787..3793 +
1691480975.6296508-UTR-H-paniculata_contig24438:3786..37931691480975.6296508-UTR-H-paniculata_contig24438:3786..3793Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24438 3787..3793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.6936636-CDS-H-paniculata_contig24438:3477..37861622929706.6936636-CDS-H-paniculata_contig24438:3477..3786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24438 3478..3786 +
1691480975.6208553-CDS-H-paniculata_contig24438:3477..37861691480975.6208553-CDS-H-paniculata_contig24438:3477..3786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24438 3478..3786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24438.6616.1

>prot_H-paniculata_contig24438.6616.1 ID=prot_H-paniculata_contig24438.6616.1|Name=mRNA_H-paniculata_contig24438.6616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MLVVQANRMMYASILQGGKVSCRVMARGVSVECMCQSSNSPVVCADGGAS
ICFFRSSRQSKTDLFDICFFSSVGRMFLPACPVRMVTASTWRTGSTQPGV
TP*
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mRNA from alignment at H-paniculata_contig24438:3313..3793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24438.6616.1 ID=mRNA_H-paniculata_contig24438.6616.1|Name=mRNA_H-paniculata_contig24438.6616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=481bp|location=Sequence derived from alignment at H-paniculata_contig24438:3313..3793+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGTAGTGCTGGCCGAAGTCGATTGAGAAGAAGCTGGAACTGCAAAC
ACGGGAACTAAAATGGGGTGCTCGGGCGAACCTTGGCAGCTGACAGAGAC
TAGTGTGTGCCGTACGTTCATAGTTTGATGCCGCAATCGCAGCTGTTCTT
TTTTCTTTTTATTTTATGCTTGTAGTGCAAGCAAACCGCATGATGTATGC
ATCGATTCTGCAAGGGGGGAAAGTGTCGTGTCGTGTTATGGCGCGGGGGG
TGTCAGTGGAATGTATGTGCCAAAGCAGCAACAGTCCAGTTGTATGTGCT
GATGGAGGTGCTTCGATTTGTTTTTTTCGGTCTTCCCGCCAATCAAAAAC
GGATTTATTTGATATCTGTTTTTTTTCCAGTGTTGGGCGTATGTTTCTTC
CTGCATGTCCCGTCCGAATGGTTACCGCCTCTACGTGGCGAACGGGATCA
ACTCAACCCGGGGTAACTCCCTAACCCTAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24438:3313..3793+

>mRNA_H-paniculata_contig24438.6616.1 ID=mRNA_H-paniculata_contig24438.6616.1|Name=mRNA_H-paniculata_contig24438.6616.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig24438:3313..3793+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGTAGTGCAAGCAAACCGCATGATGTATGCATCGATTCTGCAAGG
GGGGAAAGTGTCGTGTCGTGTTATGGCGCGGGGGGTGTCAGTGGAATGTA
TGTGCCAAAGCAGCAACAGTCCAGTTGTATGTGCTGATGGAGGTGCTTCG
ATTTGTTTTTTTCGGTCTTCCCGCCAATCAAAAACGGATTTATTTGATAT
CTGTTTTTTTTCCAGTGTTGGGCGTATGTTTCTTCCTGCATGTCCCGTCC
GAATGGTTACCGCCTCTACGTGGCGAACGGGATCAACTCAACCCGGGGTA
ACTCCCTAAATGCTTGTAGTGCAAGCAAACCGCATGATGTATGCATCGAT
TCTGCAAGGGGGGAAAGTGTCGTGTCGTGTTATGGCGCGGGGGGTGTCAG
TGGAATGTATGTGCCAAAGCAGCAACAGTCCAGTTGTATGTGCTGATGGA
GGTGCTTCGATTTGTTTTTTTCGGTCTTCCCGCCAATCAAAAACGGATTT
ATTTGATATCTGTTTTTTTTCCAGTGTTGGGCGTATGTTTCTTCCTGCAT
GTCCCGTCCGAATGGTTACCGCCTCTACGTGGCGAACGGGATCAACTCAA
CCCGGGGTAACTCCCTAA
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