mRNA_H-paniculata_contig24426.6613.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24426.6613.1
Unique NamemRNA_H-paniculata_contig24426.6613.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.050e-24
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVRESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            G   AVGSTDVTHI WG  P +   +YT KEG PT+A++  +DHSGRVL +T+G  GA NDK+I+R DK V  +R    Y    YKL  +   +  EKG YL+VD
Sbjct:  150 GFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVD 254
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5J792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J792_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.410e-24
Identity = 51/105 (48.57%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVRESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            G   A+GSTDVTHI W   P S    YT KEG P++AY+A +DH+GR+L +TKG AGA+NDK+I+  D  V  +R    Y    Y L DK+      KG Y IVD
Sbjct:    8 GFTGAIGSTDVTHIRWAFCPYSWARQYTGKEGLPSIAYQAIVDHTGRILAVTKGFAGAMNDKTIIWYDTAVAKIRRDPVYTEKVYTLSDKNGQPFERKGNYSIVD 112
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.400e-24
Identity = 53/105 (50.48%), Postives = 67/105 (63.81%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVRESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            G   AVGSTDVTHI WG  P +   +YT KEG PT+A++  +DHSGRVL +T+G  GA NDK+I+R DK V  +R    Y    YKL  +   +  EKG YL+VD
Sbjct:  241 GFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVD 345
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5KQK3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 3.490e-24
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:  442 AVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVRESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            A+ STDVTHI W C P S    Y  KEGFP++AY+A +DH+G VL +TKG AG +NDK+I+R D  V  +R    Y    Y L DK+      KG Y IVD
Sbjct:   13 AIRSTDVTHIRWACCPYSWARQYMGKEGFPSIAYQAIVDHTGHVLAVTKGFAGVMNDKTIIRYDTAVAKIRRDPVYTKKVYTLFDKNGQPFERKGNYSIVD 113
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5KVT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT5_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.670e-23
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVRESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            G   A+GSTDVTHI W C P S    YT KEGFP++AY+A ++ +G VL +TKG AGA+NDK+I+R D  V  +R    Y    Y L DK+      +G   IVD
Sbjct:    8 GFTGAIGSTDVTHIRWACCPYSWARQYTGKEGFPSIAYQAIVNDTGLVLAVTKGFAGAMNDKTIIRYDTAVAKIRRDPVYTEKVYTLFDKNGQPFEREGNNSIVD 112
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.960e-18
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVRESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            G   A+GS DVTHIAW   P +    YT KEGFPT+ Y+  +DH+GR + +T+G  G+ NDK+ V  D  V+ +R  + Y    + + ++       KG Y++VD
Sbjct:   27 GFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVD 131
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.290e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAV 651
            G   AVGS DVTHIAW   P +    YT KEGFPT+AY+  +DH+GR + +T+G  G+ NDK+IV  D  V+ +
Sbjct:  154 GFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKI 227
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5KZ66_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ66_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.460e-15
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:  481 CTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVRESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            C P S    YT KEGFP++AY+A +DH+GRVL +TKG  GA+NDK+I+R D  V  +R    Y      L D++      KG Y IVD
Sbjct:   20 CCPYSRARQYTGKEGFPSIAYQAIVDHTGRVLAVTKGFPGAMNDKTIIRYDTAVAMIRRDPVYTEKVNTLFDENGRPFERKGNYSIVD 107
[Close]
BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A6H5KL34_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL34_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.560e-13
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVL 576
            G   A+GSTDVTHI W C P S    YT KEGFP++AY+A +DH+GRVL
Sbjct:   16 GFTGAIGSTDVTHIRWACCPYSWARQYTGKEGFPSIAYQAIVDHTGRVL 64
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BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Match: A0A7S1BZ97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZ97_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.720e-12
Identity = 39/106 (36.79%), Postives = 59/106 (55.66%), Query Frame = 1 
Query:  430 GLHRAVGSTDVTHIAWGCTPASHTHLYTSKEGFPTLAYEAKIDHSGRVLEMTKGMAGAVNDKSIVRLDKTVQAVR-ESEPYRSMAYKLRDKHVVEQVEKGLYLIVD 744
            GL   VGS D  H+ W   P  +      KE   TLA++A + H+ R+L +++  AGA NDK+I R D  ++ VR +S+   S+ +   D+H VE+ + G Y I D
Sbjct:   12 GLPGCVGSVDCVHLVWDKCPVGYLSQCKGKEKHATLAFQAVVSHTKRILALSQFFAGATNDKAIARYDVAIKKVRGKSKAIASLEWGAFDEHGVEKRQTGGYFICD 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24426.6613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE1.050e-2450.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J792_9PHAE1.410e-2448.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE2.400e-2450.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQK3_9PHAE3.490e-2449.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVT5_9PHAE5.670e-2347.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSK2_ECTSI1.960e-1839.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNX4_9PHAE2.290e-1550.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZ66_9PHAE3.460e-1546.59DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KL34_9PHAE6.560e-1361.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S1BZ97_9STRA4.720e-1236.79Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24426contigH-paniculata_contig24426:247..2212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size744
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24426.6613.1prot_H-paniculata_contig24426.6613.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24426 290..1916 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.3255532-UTR-H-paniculata_contig24426:246..2891622929706.3255532-UTR-H-paniculata_contig24426:246..289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24426 247..289 +
1691480975.429525-UTR-H-paniculata_contig24426:246..2891691480975.429525-UTR-H-paniculata_contig24426:246..289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24426 247..289 +
1622929706.3689327-UTR-H-paniculata_contig24426:1916..22121622929706.3689327-UTR-H-paniculata_contig24426:1916..2212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24426 1917..2212 +
1691480975.457602-UTR-H-paniculata_contig24426:1916..22121691480975.457602-UTR-H-paniculata_contig24426:1916..2212Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24426 1917..2212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.3375523-CDS-H-paniculata_contig24426:289..4761622929706.3375523-CDS-H-paniculata_contig24426:289..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24426 290..476 +
1691480975.4386044-CDS-H-paniculata_contig24426:289..4761691480975.4386044-CDS-H-paniculata_contig24426:289..476Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24426 290..476 +
1622929706.3555722-CDS-H-paniculata_contig24426:1698..19161622929706.3555722-CDS-H-paniculata_contig24426:1698..1916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24426 1699..1916 +
1691480975.4467435-CDS-H-paniculata_contig24426:1698..19161691480975.4467435-CDS-H-paniculata_contig24426:1698..1916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24426 1699..1916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24426.6613.1

>prot_H-paniculata_contig24426.6613.1 ID=prot_H-paniculata_contig24426.6613.1|Name=mRNA_H-paniculata_contig24426.6613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MLQFPQSHRHQFERLRPLQEALCNTRSFPRGADEGGVRRTMVSEERRARR
CRRSPNGSCRAEDSGELADSGEREYSFDDIGQLSLMSESTAQSVFHTFCK
RFAEDRFHERIKLPTGDALAVTMKAYDAVGFTGQ*
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mRNA from alignment at H-paniculata_contig24426:247..2212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24426.6613.1 ID=mRNA_H-paniculata_contig24426.6613.1|Name=mRNA_H-paniculata_contig24426.6613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1966bp|location=Sequence derived from alignment at H-paniculata_contig24426:247..2212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGTATTCTCGGCCGCTGTACAGTAAATCAGCGTGGGGAAGGATGCTGC
AGTTCCCCCAATCTCACCGACACCAATTCGAGAGACTCCGGCCGCTTCAG
GAGGCGCTTTGTAATACCCGATCCTTTCCTCGTGGAGCTGATGAAGGTGG
TGTAAGAAGGACAATGGTTTCCGAAGAGAGAAGGGCACGTAGATGTCGCC
GGTCGCCGAATGGTTCCTGTAGAGCTGAAGGTATGCAGCACAACAGGCGA
TGTCCAACCACCTTGTCACGCTTGTTGTGCTTAATCATGCGCCTGACTAG
GTCATGCTTTGTGTTGTACATGGCAGCCAATTTCCCTCAGCTTATTATTG
TATTGATATGCTGTCTTACTCTTGGTGTCTTTCACCATACAGTGCTGCCT
CAGTTGTGCTTGACTGTACAGACGGTAAGATCTGTGTCTGTCACTGTGCA
TGACAGAAGTCGTCCTCTTCTTTACAGTCCAGTAGAACTGTGATGATGCG
AAGCTACCTTATCATGTATATTACTGAAGTGTCTGGCCTTATTCTTGTGT
AGTACAAACCGTACTGTCCTCGACCATACCGTGGCACAGGAAGTACGGCC
CTTCTAAGCTGTAACACATTGGATAATATGGCGGTGCTGAGTAATAAAAA
TAATGGTGTTTGCAACGAGAATTTTTTCATCCAAGGCTGCCGAATCAGCC
AGGGTGCGGGGGATACAAATTGACGCATTTCACCGTCTGGACAACATGCC
GTTGGAAATTCCAAACTGGGCTACATTCAGTTATGGGACAAGTTGAAGGT
TACCCGTTAAAAAAATGTGGTATTTGTTAGTGCCTATTGTTAATACTCTA
TTGTCCCTTCTTTCCTGTCGGCAAGGCGGGCTGCGCACACCTCAGGAGAA
TCGTTTTCTCATTAGTTTTGCCGGGCAAAGAATATCCAGACCACCCAACC
GACGCCGTGAGCTTGTACCTTACGCATGACGCGTGATGCAATACAGGATT
TCCCTAAGCGTTTGTATGCGATTTCGCTATGGGTGCGTTTGATAGTTTAT
TTGGTTTATTGGTAAGTTCGATCGGTTACCCTTTTCAATTACCCTGTTGT
TGTTGTCCTTCTCTTGCGAGGTTACATTATCAGAGAGTGACAATGGAATT
ATGCACACTGGTCACACACCGCGAAAGGAAATGCCAAAATGCCACCTGCG
GTGGATTCTCTTCCGTAGGGGTGTCTTAGGCCCATTGCAACAGTGCCACC
TTGCGTTGCTGAGGGCGATTGATATTCGATAAGCCGAGGTGCGTCGTTGC
AAGTATTTTATTTCAGCGAGGCCGTCGCACTGGGAACACGAGCGTCATCA
ATCAAATGTCTCCTTGATAATATTTCGCTATCCCAGCCGCCGTCAGTACG
GCCAACTGTTTCATGCGATTCCGTTAACATTTCCGTCGCGGCTGTATCAC
AGATTCTGGCGAGCTTGCAGATTCTGGGGAAAGGGAATACAGCTTCGATG
ATATCGGCCAGCTCTCCTTGATGAGCGAGTCGACTGCCCAAAGTGTGTTC
CACACATTTTGCAAGCGTTTCGCTGAAGATCGTTTTCATGAGAGGATTAA
ACTCCCTACCGGAGATGCCCTCGCAGTCACGATGAAGGCGTACGATGCGG
TGGGCTTCACCGGGCAGTAGGCTCGACTGATGTCACCCACATCGCATGGG
GTTGCACCCCGGCATCACATACCCATCTCTACACGAGCAAGGAAGGGTTC
CCGACTCTCGCATATGAGGCGAAGATAGACCACTCGGGGCGGGTATTGGA
GATGACGAAGGGAATGGCCGGAGCAGTGAACGATAAATCCATCGTTCGTT
TAGACAAGACAGTTCAAGCGGTCAGGGAGAGTGAACCGTACAGGTCGATG
GCTTACAAGCTCCGCGATAAGCACGTCGTGGAACAGGTGGAGAAGGGTCT
TTACCTCATCGTCGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig24426:247..2212+

>mRNA_H-paniculata_contig24426.6613.1 ID=mRNA_H-paniculata_contig24426.6613.1|Name=mRNA_H-paniculata_contig24426.6613.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig24426:247..2212+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCAGTTCCCCCAATCTCACCGACACCAATTCGAGAGACTCCGGCC
GCTTCAGGAGGCGCTTTGTAATACCCGATCCTTTCCTCGTGGAGCTGATG
AAGGTGGTGTAAGAAGGACAATGGTTTCCGAAGAGAGAAGGGCACGTAGA
TGTCGCCGGTCGCCGAATGGTTCCTGTAGAGCTGAAGATGCTGCAGTTCC
CCCAATCTCACCGACACCAATTCGAGAGACTCCGGCCGCTTCAGGAGGCG
CTTTGTAATACCCGATCCTTTCCTCGTGGAGCTGATGAAGGTGGTGTAAG
AAGGACAATGGTTTCCGAAGAGAGAAGGGCACGTAGATGTCGCCGGTCGC
CGAATGGTTCCTGTAGAGCTGAAGATTCTGGCGAGCTTGCAGATTCTGGG
GAAAGGGAATACAGCTTCGATGATATCGGCCAGCTCTCCTTGATGAGCGA
GTCGACTGCCCAAAGTGTGTTCCACACATTTTGCAAGCGTTTCGCTGAAG
ATCGTTTTCATGAGAGGATTAAACTCCCTACCGGAGATGCCCTCGCAGTC
ACGATGAAGGCGTACGATGCGGTGGGCTTCACCGGGCAGTAGATTCTGGC
GAGCTTGCAGATTCTGGGGAAAGGGAATACAGCTTCGATGATATCGGCCA
GCTCTCCTTGATGAGCGAGTCGACTGCCCAAAGTGTGTTCCACACATTTT
GCAAGCGTTTCGCTGAAGATCGTTTTCATGAGAGGATTAAACTCCCTACC
GGAGATGCCCTCGCAGTCACGATGAAGGCGTACGATGCGGTGGGCTTCAC
CGGGCAGTAG
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