mRNA_H-paniculata_contig24422.6612.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24422.6612.1
Unique NamemRNA_H-paniculata_contig24422.6612.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24422.6612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24422contigH-paniculata_contig24422:1839..2355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size517
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24422.6612.1prot_H-paniculata_contig24422.6612.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24422 1999..2313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.2398717-UTR-H-paniculata_contig24422:1838..19981622929706.2398717-UTR-H-paniculata_contig24422:1838..1998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24422 1839..1998 +
1691480975.3956785-UTR-H-paniculata_contig24422:1838..19981691480975.3956785-UTR-H-paniculata_contig24422:1838..1998Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24422 1839..1998 +
1622929706.2772665-UTR-H-paniculata_contig24422:2313..23551622929706.2772665-UTR-H-paniculata_contig24422:2313..2355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24422 2314..2355 +
1691480975.4206302-UTR-H-paniculata_contig24422:2313..23551691480975.4206302-UTR-H-paniculata_contig24422:2313..2355Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24422 2314..2355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929706.26033-CDS-H-paniculata_contig24422:1998..23131622929706.26033-CDS-H-paniculata_contig24422:1998..2313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24422 1999..2313 +
1691480975.4122562-CDS-H-paniculata_contig24422:1998..23131691480975.4122562-CDS-H-paniculata_contig24422:1998..2313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24422 1999..2313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24422.6612.1

>prot_H-paniculata_contig24422.6612.1 ID=prot_H-paniculata_contig24422.6612.1|Name=mRNA_H-paniculata_contig24422.6612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MVFLRCLVLSFIRPHFQQPVSPLELSHLSPPCSGMFAQLCRCYRCIADVP
INTYLVLPSLLSTELLLQLFDCIFLLFACPAYSTSWIMPIFNFCFDTYVK
MPVV*
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mRNA from alignment at H-paniculata_contig24422:1839..2355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24422.6612.1 ID=mRNA_H-paniculata_contig24422.6612.1|Name=mRNA_H-paniculata_contig24422.6612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=517bp|location=Sequence derived from alignment at H-paniculata_contig24422:1839..2355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGGCTACCAGTACACCCACTGTATCCTTCCTCAAATCTGCATGTCTAA
GATGTTAGTTTTTTTTTTAACATTTCCTCCTCAATAATTTCTTGTTTTTC
CCACAGTCTCTACTACGGTAATCCACTCAAAGGGCCTTGTACCCTTCTCA
ACTGCTCTCCATGGTTTTCTTGCGATGTCTGGTACTCTCATTTATTCGTC
CCCATTTTCAGCAGCCAGTATCACCACTTGAGCTCAGTCACCTCTCTCCC
CCTTGTAGCGGAATGTTTGCCCAACTCTGCCGTTGTTATCGCTGCATTGC
TGATGTGCCGATAAACACCTACTTAGTATTACCTTCTCTTTTGTCAACTG
AACTACTACTTCAACTGTTTGATTGCATTTTCCTTCTCTTCGCATGTCCT
GCGTATTCTACCAGCTGGATCATGCCGATCTTCAATTTTTGTTTCGATAC
GTACGTCAAGATGCCGGTCGTTTAAGGCCCTTTCTTATTTTTCCTTGTTT
TAATTTTGAAAAAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24422:1839..2355+

>mRNA_H-paniculata_contig24422.6612.1 ID=mRNA_H-paniculata_contig24422.6612.1|Name=mRNA_H-paniculata_contig24422.6612.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig24422:1839..2355+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTTCTTGCGATGTCTGGTACTCTCATTTATTCGTCCCCATTTTCA
GCAGCCAGTATCACCACTTGAGCTCAGTCACCTCTCTCCCCCTTGTAGCG
GAATGTTTGCCCAACTCTGCCGTTGTTATCGCTGCATTGCTGATGTGCCG
ATAAACACCTACTTAGTATTACCTTCTCTTTTGTCAACTGAACTACTACT
TCAACTGTTTGATTGCATTTTCCTTCTCTTCGCATGTCCTGCGTATTCTA
CCAGCTGGATCATGCCGATCTTCAATTTTTGTTTCGATACGTACGTCAAG
ATGCCGGTCGTTTAAATGGTTTTCTTGCGATGTCTGGTACTCTCATTTAT
TCGTCCCCATTTTCAGCAGCCAGTATCACCACTTGAGCTCAGTCACCTCT
CTCCCCCTTGTAGCGGAATGTTTGCCCAACTCTGCCGTTGTTATCGCTGC
ATTGCTGATGTGCCGATAAACACCTACTTAGTATTACCTTCTCTTTTGTC
AACTGAACTACTACTTCAACTGTTTGATTGCATTTTCCTTCTCTTCGCAT
GTCCTGCGTATTCTACCAGCTGGATCATGCCGATCTTCAATTTTTGTTTC
GATACGTACGTCAAGATGCCGGTCGTTTAA
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