mRNA_H-paniculata_contig2440.6608.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2440.6608.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI) HSP 1 Score: 691 bits (1782), Expect = 7.090e-216 Identity = 593/1246 (47.59%), Postives = 685/1246 (54.98%), Query Frame = 1
Query: 4 QEVNEAKQTKDTWVRGQLPSASSAGDTSAKSKGKAKGLVLVEGWLLAATTQRGAMMADAPDALAAQLAFEKQEAALREAAXXXXXXXXXXXXXXXXXXXXXXXXXXKA-TTAVVGGFMRAAGMLKLREEADSLSLELGTVSAGELVKVVQTSELWVRVQYRGISNGWVLTANKRGPILLPAEGSPATAAKEFQNQEAAXXXXXXXXXKAAEPVEDEDSP-----ADSKGGKGRDQNRALTAANGAKGGAPXXXXXXXXXXKAAG-------VSAGQFMTSAGSLKMREEADPFSLEVGIMEKGNIVKVLETSDLWVRVAYRGQEDGWILTANKRGAILLPVDANTNPAAA---FQAQEEKFAXXXXXXXXX---------------------------------------------------------------------------PTNP--------GDDDRPLTGAKPGGAVEAA----GARGSGT----------------------------------TAIGGAK------------------------QTSGQWVRVSYHGREDGWILTANKRGPMLAPAEGGPDAGAAAHALQEASYAETVAXXXXXXXXXEPSGDDRPLTGSKP------IASKTPGEQPLTGXXXXXXXXXXXXXXXXXXXXXGAWVPPSEFPPGHXXXXXXXXXXXXXXXXXXXXXXXXXXXQSG------------YMTALGPVKVREEADPFSMDLGVLGRGHIVKVMEMANLWVRIAYRGREDGWVLTANKRGPTLSPTEGNDASSAAEFEAQEAAFAEAXXXXXXXEALRED--DRPLTGAKP--AALDTGVDRPLAGGDGDXXXXXXXX-GAWEPPSEFPPGHVD-----------ITPVADMPKVAD-----DDPGSASPVHPEYLTALGLLKIREEADPFSMDLGTLEKGHIVKVLERSDLWMRVSYRGREDGWVLSANKRGPTLSPTEGNDASSAAEFEAQEAAFAEAAAVAAAATEAQNVDERPLTGAKP--AALDAAGDRPPXXXXXGDGDERPL-GGGKGAWVPPSEFPTGHEEDDTAGLAEPNMSGGEAGGSIGAEEGEERFMTALGCLSIGRVVASREVFIKNRHYRPVSDDRFFSL--LKLREEADPFSMDVGILARGDIVKVLEISDKWVRVSYHGREDGWVLTANKRGPTLSPTTGGPDSAALAFAEQESAFTEAAAV-ASAAPSSREDRPLTGAKQQTAV 3123
+E+NEAKQTKD WVRGQ P+ ++A G GLV EGWLLA +T+RG+M+A+AP+ALAAQ AFEKQE XXXXXXXXXXXXXXXXXXXXXXXXXX TTA VGG+MRAAG LKLREEADSLSLELGTVS GELV+V QTS LWVRV YRG S+GWVLTANKRG L PAE PA AAKEFQ QEA XXXXXXXXX DED P A SK G + + + A A+ + XXXXXXXXXX AAG S GQF+TSAG LK+REEADPFSL+V MEKG+IVKVLETSD+WVRV+YRG++DGW+LTANKRG ILLP + PAAA F AQE FA XXXXXX PT P +DRPLTG G V + G G TA+G K +TS WVRV Y GREDGW+LTANKRGP L P+E D +AA E A A +PS DRPLTG+KP A+ ++PLTG GAWVPPSEFPPG G YMTALG VKVREEADPFSMDLG + +G IVKV+E + LWVR+ YRGREDGWVLTANKRGPTL P+E D S+A EF+ QEAAFA + E + ED DRPLTGAKP AA + + GD +XXXXXX GAW PPSEFPPG D + A +V D +D V EYLTALG +K+REEADPFSMDLG+++KG +VKVLE S LW+RV YRGREDGWVL+ANKRGPTL P+E D S+A EF+ QEAAFA ++ ++ +RPLTGAKP AA AA GD ++RPL GGGKGAWVPPSEFP G E+ G +G +G + + S G VV + + VS + +L +K+REEADPFSMD+G + RGDIVKVLE S+ WVRV Y REDGWVLTANKRGPTL P+ DSAA F QE+AF +AA A A P DRPLTGAK A
Sbjct: 398 EEINEAKQTKDVWVRGQSPNTAAAA-------GSRTGLV--EGWLLAFSTKRGSMVAEAPNALAAQHAFEKQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVPTTASVGGYMRAAGQLKLREEADSLSLELGTVSRGELVRVEQTSGLWVRVLYRGDSSGWVLTANKRGASLTPAEAGPAAAAKEFQAQEAXXXXXXXXXXXNG--AGDEDRPLTGAKAGSKAGSTAVSDDSGSRAEVARARSAXXXXXXXXXXXAAGSSGKGNAASVGQFLTSAGPLKVREEADPFSLDVATMEKGHIVKVLETSDMWVRVSYRGRDDGWVLTANKRGPILLPAEGG--PAAASREFDAQEGAFAAEAXXXXXXXXXXXXXPLTGAKADGGSGGNGAWAPPSEFPPGHSKAXXXXAAGVEGSKVGPAAAEGVGPEFLATSGPLTGAKQTPTAPEVSGPGAAAGEDRPLTGGGKGAWVPPSEFPPGHEGGAPSXXXXXXXXXXXXXXXXXXXXXXAGDEAVSAEFFTALGFVKVREEADPFSMDLGSVRKGDIVKVLETSKLWVRVCYRGREDGWVLTANKRGPTLVPSE---DQASAAGEFDEQEAA--FAANGGGALPEDPS--DRPLTGAKPPPAAPTAATGASEDRPLTGGGK------------------GAWVPPSEFPPGQEDGPVSRGDGGDALVKKASAESVVDAPGQGNDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLEASKLWVRVCYRGREDGWVLTANKRGPTLVPSEDQD-SAAGEFDKQEAAFASSSG-----EVVPEDPSDRPLTGAKPPPAAPTSAI------GDSEXXXXXXGGKGAWVPPSEFPPGGEDGPVGGGDDGDALVKKASAERVVDAAGQGNDSAGGEAVSSEYLTALGFVKVREEADPFSMDLGSVKKGDVVKVLEASKLWVRVCYRGREDGWVLTANKRGPTLVPSEDQD-SAAGEFDKQEAAFASSSG----GVVPEDPADRPLTGAKPPPAAPAAA---------TGDSEDRPLTGGGKGAWVPPSEFPPGGED-----------------GPVGGGDGGDALVKKA---SAGSVVDAAGQGNDSAGGATVSSEYMTALGFVKVREEADPFSMDLGSVKRGDIVKVLETSELWVRVCYRSREDGWVLTANKRGPTLVPSED-QDSAAGEFDAQEAAFANSAANDAGAVPEDPSDRPLTGAKPPPAA 1558
BLAST of mRNA_H-paniculata_contig2440.6608.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE) HSP 1 Score: 616 bits (1588), Expect = 1.130e-187 Identity = 508/1048 (48.47%), Postives = 576/1048 (54.96%), Query Frame = 1
Query: 328 TTAVVGGFMRAAGMLKLREEADSLSLELGTVSAGELVKVVQTSELWVRVQYRGISNGWVLTANKRGPILLPAEGSPATAAKEFQNQEAAXXXXXXXXXKAAEPVEDEDSPADSKGGKGRDQNRALTAANGAKGGAPXXXXXXXXXXKAAG-------VSAGQFMTSAGSLKMREEADPFSLEVGIMEKGNIVKVLETSDLWVRVAYRGQEDGWILTANKRGAILLPVDANTNPAAA-FQAQEEKFAXXXXXXXXXPTNPGDDDRPLTGAKPGGA----------------------------------VEAAGARGSGTT--AIGGAK--------------------QTSGQWVRVSYHGREDGWILTANKRGPMLAPAEGGPDAGAAAHAL--QEASYAETVAXXXXXXXXXEPSGDDRPLTGSK--PIASKTPG-------EQPLTGXXXXXXXXXXXXXXXXXXXXXGAWVPPSEFPPGHXXXXXXXXXXXXXXXXXXXXXXXXXXX------QSGYMTALGPVKVREEADPFSMDLGVLGRGHIVKVMEMANLWVRIAYRGREDGWVLTANKRGPTLSPTEGNDASSAAEFEAQEAAFAEAXXXXXXXEALRED--DRPLTGAKP------AALDTGVDRPLAGGDGDXXXXXXXXGAWEPPSEFPPGHVD-----------ITPVADMPKVAD-----DDPGSASPVHPEYLTALGLLKIREEADPFSMDLGTLEKGHIVKVLERSDLWMRVSYRGREDGWVLSANKRGPTLSPTEGNDASSAAEFEAQEAAFAEAAAVAAAATEAQNVDERPLTGAKPAALDAAGDRPPXXXXXGDGDERPL---GGGKGAWVPPSEFPTGHEEDDTAGLAE------PNMSGGEAGGSIGAEE---GEE----RFMTALGCLSIGRVVASREVFIKNRHYRPVSDDRFFSLLKLREEADPFSMDVGILARGDIVKVLEISDKWVRVSYHGREDGWVLTANKRGPTLSPTTGGPDSAALAFAEQESAFTEAAAVASAAPSSREDRPLTGAK 3108
TTA VGG+MRAAG LKLREEADSLSLELGTVS G+LVKV QTS LWVRV YRG S+GWVLTANKRG L PAE A AAKEFQ XXXXXXXXX ++ G XXXXXXXX AAG S GQFMTSAG LK+RE+ADPFSL+V MEKG+IVKVLETSD+WVRV+YRG+EDGW+LTANKRG ILLP + + A+ F AQE FA XXXXXXXX RPLTGAK G V A A G G A G + + SG W RVSY GREDGW+LTANKRGP L P E D +AA QEAS XXXXXXXXX G+ RPLTG K P A++ G ++PLTG GAWVPPSEFPPGH XXXXXX + ++TALG VKVREEADPFSMDLG + +G +VKV+E EDGWVLTANKRGPTL P+E D S+A EF+AQEAAFA + AL ED DRPLTGAKP AA DRPL GG GAW PPSEFPPG D + A V D D V EY+TALG +K+REEADPFSMDLG+++KG IVKVLE S LW+RV YRGREDGWVL+ANKRGPT P+E D S+A EF+AQEAAFA ++ A A ++ +RPLTGAKP PP GD GGGKGAWVPPSEFP G EED G + S G A + G E+ G+E +MTALG +K+REEADPFSMD+G + +GDIVKVLE S WVRV Y GREDGW+LTANKRGPTL P+ DSAA F QE+AF A++ A P DRPLTGAK
Sbjct: 59 TTASVGGYMRAAGQLKLREEADSLSLELGTVSRGQLVKVEQTSGLWVRVLYRGDSSGWVLTANKRGASLTPAETGSAAAAKEFQAXXXXXXXXXXXXXXXXXXXXXXRPLTGARAGSTAVSXXXXXXXXXXXXXXXXXXXXXXXPPVAAGSSGKGNAASVGQFMTSAGPLKVREDADPFSLDVATMEKGHIVKVLETSDMWVRVSYRGREDGWVLTANKRGPILLPAEGDDAAASREFDAQEAAFAAXXXXXXXXXXXX---XRPLTGAKTDGGSGGNGAWAPPSEFPPGHSEEPAPPAPPARVEGSKVGPAAAEGVGPEFLATSGDEADPFSMELGVTEKGHIVRVLEKSGLWARVSYRGREDGWMLTANKRGPTLVPPE---DQASAAREFDAQEASLTAXXXXXXXXXXXXXXDGN-RPLTGVKQTPTAAEVSGPGAVAGEDRPLTGGGK------------------GAWVPPSEFPPGHEGGAPSXXXXXXAIGTKAGAAAVAGGRAGDEAVSAKFLTALGFVKVREEADPFSMDLGSVKKGDVVKVLE----------EFAEDGWVLTANKRGPTLVPSEDQD-SAAGEFDAQEAAFASSSGG-----ALPEDPADRPLTGAKPPPAASTAATGDSEDRPLTGGG---------KGAWVPPSEFPPGEEDGPVGSGDGGDVLVKKASAGSVVDAAGQEKDSAGDEAVSSEYMTALGFVKVREEADPFSMDLGSVKKGDIVKVLETSKLWVRVCYRGREDGWVLTANKRGPTFVPSEDQD-SAAGEFDAQEAAFAASSGGAVA----EDPSDRPLTGAKP---------PPAASTAATGDSEXXXXXGGGKGAWVPPSEFPPG-EEDGPVGSGDGGDVLVKKASAGSAVDAAGQEKDSAGDEAVSSEYMTALG------------------------------FVKVREEADPFSMDLGSVKKGDIVKVLETSKLWVRVCYRGREDGWILTANKRGPTLVPSED-QDSAAGEFDAQEAAF--ASSSGGALPEDPADRPLTGAK 1008 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2440.6608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2440.6608.1 >prot_H-paniculata_contig2440.6608.1 ID=prot_H-paniculata_contig2440.6608.1|Name=mRNA_H-paniculata_contig2440.6608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1052bp MQEVNEAKQTKDTWVRGQLPSASSAGDTSAKSKGKAKGLVLVEGWLLAATback to top mRNA from alignment at H-paniculata_contig2440:4439..19447- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2440.6608.1 ID=mRNA_H-paniculata_contig2440.6608.1|Name=mRNA_H-paniculata_contig2440.6608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15009bp|location=Sequence derived from alignment at H-paniculata_contig2440:4439..19447- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2440:4439..19447- >mRNA_H-paniculata_contig2440.6608.1 ID=mRNA_H-paniculata_contig2440.6608.1|Name=mRNA_H-paniculata_contig2440.6608.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6312bp|location=Sequence derived from alignment at H-paniculata_contig2440:4439..19447- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |