mRNA_H-paniculata_contig2439.6604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2439.6604.1
Unique NamemRNA_H-paniculata_contig2439.6604.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2439.6604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2439contigH-paniculata_contig2439:7655..8435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size763
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2439.6604.1prot_H-paniculata_contig2439.6604.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2439 7945..8343 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.0032537-UTR-H-paniculata_contig2439:7654..78681622929704.0032537-UTR-H-paniculata_contig2439:7654..7868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2439 7655..7868 +
1691480974.1666284-UTR-H-paniculata_contig2439:7654..78681691480974.1666284-UTR-H-paniculata_contig2439:7654..7868Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2439 7655..7868 +
1622929704.0190182-UTR-H-paniculata_contig2439:7886..79441622929704.0190182-UTR-H-paniculata_contig2439:7886..7944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2439 7887..7944 +
1691480974.1771657-UTR-H-paniculata_contig2439:7886..79441691480974.1771657-UTR-H-paniculata_contig2439:7886..7944Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2439 7887..7944 +
1622929704.109206-UTR-H-paniculata_contig2439:8343..84351622929704.109206-UTR-H-paniculata_contig2439:8343..8435Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2439 8344..8435 +
1691480974.194252-UTR-H-paniculata_contig2439:8343..84351691480974.194252-UTR-H-paniculata_contig2439:8343..8435Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2439 8344..8435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929704.0768528-CDS-H-paniculata_contig2439:7944..83431622929704.0768528-CDS-H-paniculata_contig2439:7944..8343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2439 7945..8343 +
1691480974.1860383-CDS-H-paniculata_contig2439:7944..83431691480974.1860383-CDS-H-paniculata_contig2439:7944..8343Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2439 7945..8343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2439.6604.1

>prot_H-paniculata_contig2439.6604.1 ID=prot_H-paniculata_contig2439.6604.1|Name=mRNA_H-paniculata_contig2439.6604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MMTKCVQKWFLCRITAKKMASFYFCFESLLAARAVSREQHFLANSAPRKK
LRISYGEPSSRESDPHFLQTPSNGQSRRKFPPLLPGFLGGLKFPNLYIAK
VLLHACEGFDGHNESQSPPCTCHTLHISDTQK*
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mRNA from alignment at H-paniculata_contig2439:7655..8435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2439.6604.1 ID=mRNA_H-paniculata_contig2439.6604.1|Name=mRNA_H-paniculata_contig2439.6604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=781bp|location=Sequence derived from alignment at H-paniculata_contig2439:7655..8435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTGCGCAGCCAGATGCGGTGGCTTACCGCCGGGATTTGGAGAGGCGT
CAACGGCCTCCAGCCTCCCGCAGGGCCTCCGGAGCCCAGCACTCCCCGAG
TAGAACTCCCAAGAGGGAATTTGTTTGATAAAATGACGAGTTATTTGGGC
CAGAGTTTGTGCCCAACTTGGCTTTTCCCATCCTATTTTCAGAATAACCT
AGAGCCTAGATAGAGCTCTCTTCAGTGCGAAGGGCACAGCAGAAAATAAA
ACGCACTGAAAACCATGCTGAGAAAACATTCTTGGCCTTCATGATGACAA
AATGCGTTCAAAAATGGTTTCTTTGCCGAATTACGGCGAAAAAAATGGCC
TCATTTTATTTTTGCTTTGAATCACTTCTTGCGGCAAGAGCTGTTTCGAG
AGAGCAGCATTTTCTGGCAAATTCCGCCCCGAGGAAAAAACTTCGTATAA
GTTATGGAGAACCTTCTTCGAGAGAAAGTGATCCTCATTTTCTCCAGACC
CCCTCAAACGGCCAAAGTCGGCGAAAATTCCCGCCACTATTACCTGGTTT
CTTGGGAGGCTTGAAATTCCCAAACCTGTATATTGCGAAAGTTTTGCTGC
ACGCATGTGAAGGGTTCGATGGTCATAATGAAAGCCAATCACCACCATGC
ACCTGTCACACGTTACACATCTCTGACACACAAAAATGAATAACGACTGA
TCGTTACATGTATGACATATCACATGTTGACGCACGCATAGCCAAGTTAG
ACACATGATGCCGAAGCGATAGCCACAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2439:7655..8435+

>mRNA_H-paniculata_contig2439.6604.1 ID=mRNA_H-paniculata_contig2439.6604.1|Name=mRNA_H-paniculata_contig2439.6604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig2439:7655..8435+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACAAAATGCGTTCAAAAATGGTTTCTTTGCCGAATTACGGCGAA
AAAAATGGCCTCATTTTATTTTTGCTTTGAATCACTTCTTGCGGCAAGAG
CTGTTTCGAGAGAGCAGCATTTTCTGGCAAATTCCGCCCCGAGGAAAAAA
CTTCGTATAAGTTATGGAGAACCTTCTTCGAGAGAAAGTGATCCTCATTT
TCTCCAGACCCCCTCAAACGGCCAAAGTCGGCGAAAATTCCCGCCACTAT
TACCTGGTTTCTTGGGAGGCTTGAAATTCCCAAACCTGTATATTGCGAAA
GTTTTGCTGCACGCATGTGAAGGGTTCGATGGTCATAATGAAAGCCAATC
ACCACCATGCACCTGTCACACGTTACACATCTCTGACACACAAAAATGAA
TGATGACAAAATGCGTTCAAAAATGGTTTCTTTGCCGAATTACGGCGAAA
AAAATGGCCTCATTTTATTTTTGCTTTGAATCACTTCTTGCGGCAAGAGC
TGTTTCGAGAGAGCAGCATTTTCTGGCAAATTCCGCCCCGAGGAAAAAAC
TTCGTATAAGTTATGGAGAACCTTCTTCGAGAGAAAGTGATCCTCATTTT
CTCCAGACCCCCTCAAACGGCCAAAGTCGGCGAAAATTCCCGCCACTATT
ACCTGGTTTCTTGGGAGGCTTGAAATTCCCAAACCTGTATATTGCGAAAG
TTTTGCTGCACGCATGTGAAGGGTTCGATGGTCATAATGAAAGCCAATCA
CCACCATGCACCTGTCACACGTTACACATCTCTGACACACAAAAATGA
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