mRNA_H-paniculata_contig24365.6601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24365.6601.1
Unique NamemRNA_H-paniculata_contig24365.6601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24365.6601.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.260e-8
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1 
Query:    4 LSSTGGGEFNVTWQGRVIIDRAFNVSGGTQLTVTGSATSANNEGDAIIDAQSSTGMFTVADGSTLRLINLVLEGGNNTL--------GGSVYSKGPS-LVSVVDCNFTNNDAVRGG 324
            L  +G GEF V WQG V+++R   +S G+ + VTG++      G+A+ID   +  +F V DGSTL L  L L  G  T         GG+V  +    +++   C+F  N+A+  G
Sbjct:   46 LLCSGAGEFEVEWQGEVLLERPIFISNGSYVKVTGASA-----GEAVIDGGDAVVLFNVNDGSTLELDALSLVRGVATYTATYSYGGGGAVILRSDDCILTASSCSFIGNNAIDSG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24365.6601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JWI3_9PHAE3.260e-834.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24365contigH-paniculata_contig24365:3141..3470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.7480667-CDS-H-paniculata_contig24365:3140..34701622929703.7480667-CDS-H-paniculata_contig24365:3140..3470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24365 3141..3470 -
1691480974.0661747-CDS-H-paniculata_contig24365:3140..34701691480974.0661747-CDS-H-paniculata_contig24365:3140..3470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24365 3141..3470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24365.6601.1prot_H-paniculata_contig24365.6601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24365 3141..3470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24365.6601.1

>prot_H-paniculata_contig24365.6601.1 ID=prot_H-paniculata_contig24365.6601.1|Name=mRNA_H-paniculata_contig24365.6601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MLSSTGGGEFNVTWQGRVIIDRAFNVSGGTQLTVTGSATSANNEGDAIID
AQSSTGMFTVADGSTLRLINLVLEGGNNTLGGSVYSKGPSLVSVVDCNFT
NNDAVRGGA*
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mRNA from alignment at H-paniculata_contig24365:3141..3470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24365.6601.1 ID=mRNA_H-paniculata_contig24365.6601.1|Name=mRNA_H-paniculata_contig24365.6601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig24365:3141..3470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAGCTCCACCGGTGGAGGGGAGTTCAATGTGACCTGGCAGGGTAG
AGTAATCATCGACCGAGCGTTCAACGTGTCCGGCGGCACCCAGTTGACCG
TCACGGGCTCGGCAACCTCAGCCAATAACGAAGGAGACGCTATCATCGAC
GCGCAGAGTTCCACTGGAATGTTCACCGTGGCTGATGGATCGACTCTGCG
CCTCATCAACTTGGTATTGGAGGGAGGGAACAACACGCTTGGAGGATCGG
TGTACTCCAAGGGGCCATCCCTCGTCAGCGTGGTCGACTGCAACTTCACG
AACAACGATGCTGTGAGAGGAGGTGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24365:3141..3470-

>mRNA_H-paniculata_contig24365.6601.1 ID=mRNA_H-paniculata_contig24365.6601.1|Name=mRNA_H-paniculata_contig24365.6601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig24365:3141..3470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGAGCTCCACCGGTGGAGGGGAGTTCAATGTGACCTGGCAGGGTAG
AGTAATCATCGACCGAGCGTTCAACGTGTCCGGCGGCACCCAGTTGACCG
TCACGGGCTCGGCAACCTCAGCCAATAACGAAGGAGACGCTATCATCGAC
GCGCAGAGTTCCACTGGAATGTTCACCGTGGCTGATGGATCGACTCTGCG
CCTCATCAACTTGGTATTGGAGGGAGGGAACAACACGCTTGGAGGATCGG
TGTACTCCAAGGGGCCATCCCTCGTCAGCGTGGTCGACTGCAACTTCACG
AACAACGATGCTGTGAGAGGAGGTGCGTGAATGCTGAGCTCCACCGGTGG
AGGGGAGTTCAATGTGACCTGGCAGGGTAGAGTAATCATCGACCGAGCGT
TCAACGTGTCCGGCGGCACCCAGTTGACCGTCACGGGCTCGGCAACCTCA
GCCAATAACGAAGGAGACGCTATCATCGACGCGCAGAGTTCCACTGGAAT
GTTCACCGTGGCTGATGGATCGACTCTGCGCCTCATCAACTTGGTATTGG
AGGGAGGGAACAACACGCTTGGAGGATCGGTGTACTCCAAGGGGCCATCC
CTCGTCAGCGTGGTCGACTGCAACTTCACGAACAACGATGCTGTGAGAGG
AGGTGCGTGA
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