mRNA_H-paniculata_contig24360.6600.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24360.6600.1
Unique NamemRNA_H-paniculata_contig24360.6600.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24360.6600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24360contigH-paniculata_contig24360:2511..2968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24360.6600.1prot_H-paniculata_contig24360.6600.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24360 2511..2845 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.6439116-CDS-H-paniculata_contig24360:2510..26641622929703.6439116-CDS-H-paniculata_contig24360:2510..2664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24360 2511..2664 +
1691480974.0266063-CDS-H-paniculata_contig24360:2510..26641691480974.0266063-CDS-H-paniculata_contig24360:2510..2664Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24360 2511..2664 +
1622929703.6551573-CDS-H-paniculata_contig24360:2777..28451622929703.6551573-CDS-H-paniculata_contig24360:2777..2845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24360 2778..2845 +
1691480974.0393922-CDS-H-paniculata_contig24360:2777..28451691480974.0393922-CDS-H-paniculata_contig24360:2777..2845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24360 2778..2845 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.6756382-UTR-H-paniculata_contig24360:2845..29681622929703.6756382-UTR-H-paniculata_contig24360:2845..2968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24360 2846..2968 +
1691480974.0567498-UTR-H-paniculata_contig24360:2845..29681691480974.0567498-UTR-H-paniculata_contig24360:2845..2968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24360 2846..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24360.6600.1

>prot_H-paniculata_contig24360.6600.1 ID=prot_H-paniculata_contig24360.6600.1|Name=mRNA_H-paniculata_contig24360.6600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
PQGVGWRACVLADPSRILGAYLSQSHVEHGVLQQRWVVEGCTGRSLPSCF
RLVNEKPIPGGGGDVDGAVVVES*
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mRNA from alignment at H-paniculata_contig24360:2511..2968+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24360.6600.1 ID=mRNA_H-paniculata_contig24360.6600.1|Name=mRNA_H-paniculata_contig24360.6600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=458bp|location=Sequence derived from alignment at H-paniculata_contig24360:2511..2968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATGTTGTCGAACAGCTGGTTGTCAATAAAATGGTTAGACGCTCCGCTG
TCCGCTATCATGCAGAACTTGATTAATGAACTGGGAGTCGGCTTCGCGTA
GGTGTTGGATTCTTCAGTGGTGAACGAAAAACCGATACCGGGCGGTGGCG
GTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGAGTAGTCGAAGCACTG
AACGCAGTCGGAGTGTTGTACGTAGGAGGTACTGTAGTGGCGGCCGGGTC
GATGGCGGTGTTGGCTTGGTACGGGGGGCTGCTCTGTTGATGCTGTCCAT
GCTGAGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24360:2511..2968+

>mRNA_H-paniculata_contig24360.6600.1 ID=mRNA_H-paniculata_contig24360.6600.1|Name=mRNA_H-paniculata_contig24360.6600.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig24360:2511..2968+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGCGAAT
ACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTGCAGC
AGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTGCTTT
CGATCCACAGGGAGTTGGATGGCGCGCTTGCGTCCTTGCTGATCCTTCGC
GAATACTTGGAGCGTACCTTTCCCAATCCCATGTAGAACATGGCGTCCTG
CAGCAGAGATGGGTAGTGGAGGGTTGTACTGGACGAAGTCTACCATCTTG
CTTTCGATTGGTGAACGAAAAACCGATACCGGGCGGTGGCGGTGACGTGG
ATGGTGCGGTAGTTGTCGAAAGTTGATGGTGAACGAAAAACCGATACCGG
GCGGTGGCGGTGACGTGGATGGTGCGGTAGTTGTCGAAAGTTGA
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