mRNA_H-paniculata_contig24356.6597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24356.6597.1
Unique NamemRNA_H-paniculata_contig24356.6597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24356.6597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24356contigH-paniculata_contig24356:1424..2679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size801
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24356.6597.1prot_H-paniculata_contig24356.6597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24356 1536..2126 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.263942-UTR-H-paniculata_contig24356:1423..15351622929703.263942-UTR-H-paniculata_contig24356:1423..1535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24356 1424..1535 -
1691480973.8396506-UTR-H-paniculata_contig24356:1423..15351691480973.8396506-UTR-H-paniculata_contig24356:1423..1535Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24356 1424..1535 -
1622929703.3362916-UTR-H-paniculata_contig24356:2126..21551622929703.3362916-UTR-H-paniculata_contig24356:2126..2155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24356 2127..2155 -
1691480973.8617582-UTR-H-paniculata_contig24356:2126..21551691480973.8617582-UTR-H-paniculata_contig24356:2126..2155Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24356 2127..2155 -
1622929703.352485-UTR-H-paniculata_contig24356:2610..26791622929703.352485-UTR-H-paniculata_contig24356:2610..2679Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24356 2611..2679 -
1691480973.871853-UTR-H-paniculata_contig24356:2610..26791691480973.871853-UTR-H-paniculata_contig24356:2610..2679Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24356 2611..2679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929703.3230758-CDS-H-paniculata_contig24356:1535..21261622929703.3230758-CDS-H-paniculata_contig24356:1535..2126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24356 1536..2126 -
1691480973.8505373-CDS-H-paniculata_contig24356:1535..21261691480973.8505373-CDS-H-paniculata_contig24356:1535..2126Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24356 1536..2126 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24356.6597.1

>prot_H-paniculata_contig24356.6597.1 ID=prot_H-paniculata_contig24356.6597.1|Name=mRNA_H-paniculata_contig24356.6597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MVDVRKKTCSHEGCSTQPSYGSAGTRKTEFCSRHAKAGMVNVRSKTCSQE
SCSTQPSYGSAGTRKREFCARHAQDGMAVDRTPKSISRGHLSQKWSSSSR
IKEEEPSGEADGNDGYPGTSEKAGERNRRTGRSHSDSSVVRENCIVKRAR
RGAGLTISEQPALTMPAAGMLSLDDVTKVKMEVTVSRCSSSDQASL*
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mRNA from alignment at H-paniculata_contig24356:1424..2679-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24356.6597.1 ID=mRNA_H-paniculata_contig24356.6597.1|Name=mRNA_H-paniculata_contig24356.6597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1256bp|location=Sequence derived from alignment at H-paniculata_contig24356:1424..2679- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAGACGTGCTCCCACGAGGACTGCTCGACACGTCCGTCGTACGGGTCGG
CGGGCACGAGAAAGACAGAGTTCTGTGCGCAGCATGCCAAAGCCGGTATG
GTTGACGTGCGGAAAAAGACGTGTTTTCACGAGGGCTGCTCGACACGTCC
GTCGTACGGGTCGGCAGGCACGAGAAAGGCAGAGTTCTGTGCGCAGCATG
CCAAAGCCGGCATGGTGGACGTGCGGAACAAGACGTGCTCCCAGGAGGAC
TGCTGGACGTATCCGTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTT
CTGTGCGCGGCATGCCAAAGCCGGTATGGTGGACGTGCGGCGCAAGACGT
GCTCCCACGAGGGCTGCTCTACACAGCCATCGTACGGGTCGGCGGGCACG
AGAAAGACAGAGTTCTGTGCGCGGCATGCCAAAGCCGGCATGGTAAACGT
GCGGAGTAAGACGTGTTCTCAGGAGAGCTGTTCTACATATTCGTCGTACG
GGTCGGCGGGCACGAGAAAGGCAGAGTTCTGTGCGCGGCATGCCAAAGCC
GGTATGGTGGACGTGCGGAAAAAGACGTGCTCCCACGAGGGCTGCTCTAC
ACAGCCGTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTTCTGTTCGC
GGCATGCCAAAGCCGGCATGGTAAACGTGCGGAGTAAGACTTGTTCTCAG
GAGAGCTGCTCTACACAGCCGTCATACGGGTCGGCGGGCACGAGAAAGAG
AGAGTTCTGTGCGCGGCATGCCCAAGACGGGATGGCCGTCGACAGAACCC
CGAAGAGCATTAGCCGCGGCCATCTTTCGCAGAAATGGTCAAGTTCTTCA
CGGATAAAAGAAGAAGAGCCTTCGGGTGAGGCCGACGGTAATGACGGGTA
TCCGGGAACTTCCGAGAAGGCCGGAGAGCGAAACCGACGCACTGGGCGTT
CACACAGCGATAGTTCTGTTGTGCGCGAGAATTGCATAGTGAAAAGGGCT
CGCAGGGGCGCGGGATTGACAATCTCGGAGCAGCCCGCTCTTACCATGCC
CGCTGCTGGCATGTTGTCTCTCGACGACGTGACCAAGGTCAAAATGGAGG
TGACTGTGTCGCGATGTTCGTCGTCTGACCAGGCCTCGCTGTGAGTGGCG
GAGGATCCAGATCATGGAGGAGGCGATTATGGGTGGCTTTCTATGCGCGA
GTAATAGCCGCTCATGAATAATGGGAACCAATTTTTTCGATGGAAACAGA
GTGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig24356:1424..2679-

>mRNA_H-paniculata_contig24356.6597.1 ID=mRNA_H-paniculata_contig24356.6597.1|Name=mRNA_H-paniculata_contig24356.6597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig24356:1424..2679- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGACGTGCGGAAAAAGACGTGCTCCCACGAGGGCTGCTCTACACA
GCCGTCGTACGGGTCGGCGGGCACGAGAAAGACAGAGTTCTGTTCGCGGC
ATGCCAAAGCCGGCATGGTAAACGTGCGGAGTAAGACTTGTTCTCAGGAG
AGCTGCTCTACACAGCCGTCATACGGGTCGGCGGGCACGAGAAAGAGAGA
GTTCTGTGCGCGGCATGCCCAAGACGGGATGGCCGTCGACAGAACCCCGA
AGAGCATTAGCCGCGGCCATCTTTCGCAGAAATGGTCAAGTTCTTCACGG
ATAAAAGAAGAAGAGCCTTCGGGTGAGGCCGACGGTAATGACGGGTATCC
GGGAACTTCCGAGAAGGCCGGAGAGCGAAACCGACGCACTGGGCGTTCAC
ACAGCGATAGTTCTGTTGTGCGCGAGAATTGCATAGTGAAAAGGGCTCGC
AGGGGCGCGGGATTGACAATCTCGGAGCAGCCCGCTCTTACCATGCCCGC
TGCTGGCATGTTGTCTCTCGACGACGTGACCAAGGTCAAAATGGAGGTGA
CTGTGTCGCGATGTTCGTCGTCTGACCAGGCCTCGCTGTGAATGGTGGAC
GTGCGGAAAAAGACGTGCTCCCACGAGGGCTGCTCTACACAGCCGTCGTA
CGGGTCGGCGGGCACGAGAAAGACAGAGTTCTGTTCGCGGCATGCCAAAG
CCGGCATGGTAAACGTGCGGAGTAAGACTTGTTCTCAGGAGAGCTGCTCT
ACACAGCCGTCATACGGGTCGGCGGGCACGAGAAAGAGAGAGTTCTGTGC
GCGGCATGCCCAAGACGGGATGGCCGTCGACAGAACCCCGAAGAGCATTA
GCCGCGGCCATCTTTCGCAGAAATGGTCAAGTTCTTCACGGATAAAAGAA
GAAGAGCCTTCGGGTGAGGCCGACGGTAATGACGGGTATCCGGGAACTTC
CGAGAAGGCCGGAGAGCGAAACCGACGCACTGGGCGTTCACACAGCGATA
GTTCTGTTGTGCGCGAGAATTGCATAGTGAAAAGGGCTCGCAGGGGCGCG
GGATTGACAATCTCGGAGCAGCCCGCTCTTACCATGCCCGCTGCTGGCAT
GTTGTCTCTCGACGACGTGACCAAGGTCAAAATGGAGGTGACTGTGTCGC
GATGTTCGTCGTCTGACCAGGCCTCGCTGTGA
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