mRNA_H-paniculata_contig24352.6596.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24352.6596.1
Unique NamemRNA_H-paniculata_contig24352.6596.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 531 bits (1369), Expect = 1.630e-177
Identity = 261/267 (97.75%), Postives = 263/267 (98.50%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHDPNYGWTNLMQQ 801
            GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDK TQFVVGTAIKSQFITDGLKYSLATGNWGDKK ATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQT+CTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVE NRL +RKKHINDLHDPNYGWTNLMQQ
Sbjct:  482 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQ 748
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 412 bits (1060), Expect = 1.110e-132
Identity = 203/268 (75.75%), Postives = 226/268 (84.33%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDL--HDPNYGWTNLMQ 798
            GKKRLDLAG L+AGLFR              Q CLD+   FV+G AIKS  IT+GL+YSLATGNWGD+K ATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVGC+LSPILEFLEEWA ENL+EI+P  IA+  CTK+FVNGNW+G+HR+PN+LV+TLV QRR LDID EVSVVRDIK RELRLYTDAGR+CRPLFVV+ N+L +RK HI+DL  +   Y WT+LMQ
Sbjct:  393 GKKRLDLAGPLVAGLFRTXXXXXXXXXXXXXQKCLDEGRGFVLGVAIKSNTITNGLRYSLATGNWGDQKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGCALSPILEFLEEWATENLEEISPSTIAEKQCTKIFVNGNWIGIHREPNQLVRTLVIQRRCLDIDAEVSVVRDIKERELRLYTDAGRICRPLFVVQNNKLVIRKSHIHDLVSNPEEYNWTSLMQ 660
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A7S2AX64_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AX64_9STRA)

HSP 1 Score: 383 bits (983), Expect = 2.750e-125
Identity = 192/274 (70.07%), Postives = 223/274 (81.39%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQN-----RLCVRKKHINDL--HDPNYGWTNLMQQ 801
            GKKRLDLAG LLAGLFR LFRKLT++VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD+++ ++AGVSQVLNRL YAS LSHLRRLNTPLGREGKQA PRQLHNTHWG +CPAETPEGQAVGLVKNLALMAYISVG + +PILEFL+EW+ME+L+EI P +I+    TK+ VNGNWVG+HRDP RL QT+   RR LD D EVSVVRDIK  ELR+YTDAGRVCRPLF+VE++     RL V+K H   L   +  Y W+NL  +
Sbjct:  394 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQAGPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGSAQAPILEFLDEWSMEHLEEIQPAVISDPGTTKILVNGNWVGIHRDPERLCQTMRALRRRLDFDPEVSVVRDIKESELRIYTDAGRVCRPLFIVEKDDYGLQRLKVKKSHTRRLLSDEEKYRWSNLTME 667
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: F0YIN3_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN3_AURAN)

HSP 1 Score: 392 bits (1006), Expect = 4.030e-125
Identity = 193/268 (72.01%), Postives = 221/268 (82.46%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQ---NRLCVRKKHINDLHDPNYGWTNLM 795
            GKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D+   F + +AIKS+ ITDGL+YSLATGNWGD+KDA++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALM+Y+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+WVGVHRDP+ L  TL   RR +DID EVSVVRDIK +ELR+YTDAGRVCRPL ++ +     L +RK HI  L +   GWT L+
Sbjct:  340 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEGRDFNLASAIKSRVITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRIYTDAGRVCRPLLIISKFSRQELRLRKSHIQKLVNGELGWTQLL 607
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A8J2SZW4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 388 bits (997), Expect = 4.210e-123
Identity = 195/283 (68.90%), Postives = 224/283 (79.15%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQN------------------RLCVRKKHINDLHDPNYGWTNLM 795
            GKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D++  F + +AIKS+ ITDGL+YSLATGNWGD+KDA++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAY+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+W+GVHRDP  L  TL   RR +DID EVSVVRDIK +ELR+YTDAGRVCRPL +VE +                  +L +RK HI+ L +   GWT L+
Sbjct:  436 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEARDFNLASAIKSRLITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWIGVHRDPCTLEATLRSLRRQIDIDPEVSVVRDIKEKELRVYTDAGRVCRPLLIVESDHASTWKDPLNHSSSSPAQKLKLRKPHIHKLVNGELGWTQLL 718
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A418ATP0_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A418ATP0_9STRA)

HSP 1 Score: 376 bits (965), Expect = 6.580e-123
Identity = 186/270 (68.89%), Postives = 222/270 (82.22%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHD---PNYGWTNLMQQ 801
            G KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D    F +  AIKS+ I++GL+YSLATGNWG +K A+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I   + TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDAGRVCRPLF+VE NRL ++K+H+  L +    ++ W NL+ +
Sbjct:   43 GNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTHFRWQNLLTE 310
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: F0YGN2_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN2_AURAN)

HSP 1 Score: 387 bits (995), Expect = 6.910e-123
Identity = 193/279 (69.18%), Postives = 221/279 (79.21%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQ--------------NRLCVRKKHINDLHDPNYGWTNLM 795
            GKKRLDLAG LL GLFR LFRKLT++V  YLQ C+D    F + +AIKS+ +TDGL+YSLATGNWGD+KDA++AGVSQVLNRLTYAS LSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALM+Y+SVG   SPILEFLEEW+MENL+EI+P  IA    TK+FVNG+WVGVHRDP+ L  TL   RR +DID EVSVVRDIK +ELR+YTDAGRVCRPL +VE                 L +RK H+  L + + GWT L+
Sbjct:  437 GKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGDLGWTQLL 715
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A7S2F9I8_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F9I8_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.850e-122
Identity = 192/274 (70.07%), Postives = 223/274 (81.39%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQN-----RLCVRKKHINDL--HDPNYGWTNLMQQ 801
            GKKRLDLAG LLAGLFR LFRKLT++VRKYLQ CLD+   F V TAIKS+ ++DGLKYSLATGNWGD+++ ++AGVSQVLNRL YAS LSHLRRLNTPLGREGKQA PRQLHNTHWG +CPAETPEGQAVGLVKNLALMAYISVG + +PILEFL+EW+ME+L+EI P +I+    TK+ VNGNWVG+HRDP RL QT+   RR LD D EVSVVRDIK  ELR+YTDAGRVCRPLF+VE++     RL V+K H   L   +  Y W+NL  +
Sbjct:  252 GKKRLDLAGPLLAGLFRLLFRKLTKDVRKYLQRCLDERKPFNVTTAIKSRTLSDGLKYSLATGNWGDRRNPSRAGVSQVLNRLAYASTLSHLRRLNTPLGREGKQAGPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGSAQAPILEFLDEWSMEHLEEIQPAVISDPGTTKILVNGNWVGIHRDPERLCQTMRALRRRLDFDPEVSVVRDIKESELRIYTDAGRVCRPLFIVEKDDYGLQRLKVKKSHTRRLLSDEEKYRWSNLTME 525
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A6A4ZKU8_9STRA (DNA-directed RNA polymerase (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZKU8_9STRA)

HSP 1 Score: 375 bits (964), Expect = 1.560e-121
Identity = 186/270 (68.89%), Postives = 221/270 (81.85%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHD---PNYGWTNLMQQ 801
            G KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D    F +  AIKS+ I++GL+YSLATGNWG +K A+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I   + TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDAGRVCRPLF+VE NRL ++K+H+  L +     + W NL+ +
Sbjct:  344 GNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTQFRWQNLLTE 611
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BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Match: A0A425D5T0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5T0_9STRA)

HSP 1 Score: 375 bits (964), Expect = 1.200e-120
Identity = 186/270 (68.89%), Postives = 221/270 (81.85%), Query Frame = 1 
Query:    1 GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQFITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKHINDLHD---PNYGWTNLMQQ 801
            G KRLDLAG LL GLFR LF+KLT++V+ YLQ C+D    F +  AIKS+ I++GL+YSLATGNWG +K A+KAGVSQVLNRLTYAS+LSHLRRLNTPLGREGKQAKPRQLHNTHWG ICPAETPEGQAVGLVKNLALMAYISVG   +PILEFLEEW+ ENL+EI   +I   + TK+FVNGNWVGVHR+PN LV+TL   RR +DID EVSV+RD+  +ELR+YTDAGRVCRPLF+VE NRL ++K+H+  L +     + W NL+ +
Sbjct:  394 GNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQIIP--TATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDAEVSVIRDLMQKELRIYTDAGRVCRPLFIVENNRLLLQKQHVVKLQNHKHTQFRWQNLLTE 661
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24352.6596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHZ3_ECTSI1.630e-17797.75DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A835YQ41_9STRA1.110e-13275.75DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S2AX64_9STRA2.750e-12570.07DNA-directed RNA polymerase (Fragment) n=1 Tax=Dic... [more]
F0YIN3_AURAN4.030e-12572.01DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A8J2SZW4_9STRA4.210e-12368.90DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A418ATP0_9STRA6.580e-12368.89DNA-directed RNA polymerase subunit beta n=2 Tax=A... [more]
F0YGN2_AURAN6.910e-12369.18DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A7S2F9I8_9STRA1.850e-12270.07DNA-directed RNA polymerase subunit beta n=1 Tax=D... [more]
A0A6A4ZKU8_9STRA1.560e-12168.89DNA-directed RNA polymerase (Fragment) n=3 Tax=Aph... [more]
A0A425D5T0_9STRA1.200e-12068.89DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24352contigH-paniculata_contig24352:739..3625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score532.3
Seed ortholog evalue1.3e-148
Seed eggNOG ortholog2880.D7FHZ3
Preferred nameRPB2
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0214@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons5
Model size801
Cds size801
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24352.6596.1prot_H-paniculata_contig24352.6596.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24352 739..3625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929702.9536395-CDS-H-paniculata_contig24352:738..8881622929702.9536395-CDS-H-paniculata_contig24352:738..888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 739..888 +
1691480973.7835507-CDS-H-paniculata_contig24352:738..8881691480973.7835507-CDS-H-paniculata_contig24352:738..888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 739..888 +
1622929702.9733715-CDS-H-paniculata_contig24352:1685..18501622929702.9733715-CDS-H-paniculata_contig24352:1685..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 1686..1850 +
1691480973.8010726-CDS-H-paniculata_contig24352:1685..18501691480973.8010726-CDS-H-paniculata_contig24352:1685..1850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 1686..1850 +
1622929702.988955-CDS-H-paniculata_contig24352:2075..22161622929702.988955-CDS-H-paniculata_contig24352:2075..2216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 2076..2216 +
1691480973.8103487-CDS-H-paniculata_contig24352:2075..22161691480973.8103487-CDS-H-paniculata_contig24352:2075..2216Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 2076..2216 +
1622929703.0038505-CDS-H-paniculata_contig24352:2719..29501622929703.0038505-CDS-H-paniculata_contig24352:2719..2950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 2720..2950 +
1691480973.8197622-CDS-H-paniculata_contig24352:2719..29501691480973.8197622-CDS-H-paniculata_contig24352:2719..2950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 2720..2950 +
1622929703.2292826-CDS-H-paniculata_contig24352:3511..36251622929703.2292826-CDS-H-paniculata_contig24352:3511..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 3512..3625 +
1691480973.8295774-CDS-H-paniculata_contig24352:3511..36251691480973.8295774-CDS-H-paniculata_contig24352:3511..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24352 3512..3625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24352.6596.1

>prot_H-paniculata_contig24352.6596.1 ID=prot_H-paniculata_contig24352.6596.1|Name=mRNA_H-paniculata_contig24352.6596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=267bp
GKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKSTQFVVGTAIKSQ
FITDGLKYSLATGNWGDKKDATKAGVSQVLNRLTYASALSHLRRLNTPLG
REGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSP
ILEFLEEWAMENLDEIAPHMIAQTSCTKVFVNGNWVGVHRDPNRLVQTLV
HQRRALDIDVEVSVVRDIKGRELRLYTDAGRVCRPLFVVEQNRLCVRKKH
INDLHDPNYGWTNLMQQ
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mRNA from alignment at H-paniculata_contig24352:739..3625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24352.6596.1 ID=mRNA_H-paniculata_contig24352.6596.1|Name=mRNA_H-paniculata_contig24352.6596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2887bp|location=Sequence derived from alignment at H-paniculata_contig24352:739..3625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGAAGAGGCTGGATCTGGCGGGGGCCTTGCTCGCGGGACTGTTCCG
ACAACTGTTCCGAAAGCTGACGCAAAACGTGAGGAAATATTTGCAGCTTT
GTCTCGACAAGAGCACACAGTTCGTCGTAGGAACGGCCATCAAGAGCCAG
GTGAGGGGTGGGTTACTCTGTCAAGACAGGTGCCGGTATACGAGAGGTAA
TCGGTAACAAAGTTTAACACATGGAAGGACGAATTAGTTGCCTGAAACGA
CTGATTAGGCCATGGTATTCCCCTTGAGAGCAAATTCCCGACCCTCGGTA
GGTGTTGAGGTGATGAAGGGAGGGAATGTAACATGCACACGATCTGAAAG
CGTAAAATACAAATAGGATCGAAGAGACAGGGAGCTAGCTTCGTTTTAGA
TGACGTTGAACGGGTTTCAAGTAGTCATTTCAGACGATTAATCAGTTGCT
ATATGTGTGTAAAGTTTGTACGTGTATGAAAGCGACGACGAAAGCGGAAA
CGGTGCTGTGGTTTTGATTTGGTGTACAGAGAGGTGTGTGCTGATGTGGA
ATGTGACGATGTTTTCAAACGCTGTACGTCGTGCAGACTAATTGTATTAT
AGTAATCAACTTATGTCGCGTTTTCGTTTTCGTGTTCGTCTTTTTTTTCG
TCTTTTTTTTGCGCCTGTTTATGCACGACGTGGTGACATAACAGCAAAAA
CAGTACTGCAGCACATGAAAAATGCATCACGGTAGAACGCATTTGTAATG
CCATCAGCACAGTGAGCCAGATAGTAGCACCGTGCTGCATGTAATAATAC
TGTACAGCCGTAAATGGCACATATTTTAGCGTTAGAAGTAAATAGCCGAA
CATGATCCATGTAAACATGGATATCACATGTTGACAAATACGAAAGCATG
ATACTGATGTTTTGTGTATGTATACGTTGGGTTTGTGCTTGATATAGTTC
ATCACGGACGGGTTGAAGTACTCTCTGGCGACGGGCAACTGGGGAGACAA
GAAGGATGCCACCAAGGCGGGCGTGAGTCAGGTGTTGAATCGACTCACGT
ACGCCTCCGCGCTGTCTCACTTGAGAAGGCTCAACACGCCGCTGGGGCGA
GAGGGAAAGCAGGTGTGTTGAGTATTTTGTGTTGATATTAGCGTGACCCA
CTTATGATGATTATGGTGTTGGTGGTGGTGTATGAGGGCTTTCCTTGTTT
ATGTTTGTGTGTGAGCGAGCTTGTTTGTGCTTTATCTGCTTTGCTTGGTT
ATTTTGTTTTAGTTCTCTCCTTTTTACTAGTGGTTGTTGCATTTTTGGGG
GCCTTGATCGCCTAGCCGACCTCTCTCTCGTCAACAGGCCAAGCCTCGAC
AACTGCACAACACCCACTGGGGCTTCATATGCCCCGCCGAGACACCCGAG
GGGCAAGCGGTGGGACTGGTGAAGAATCTAGCTCTTATGGCGTACATCAG
CGTTGGGTGCTCTCTTTCGCCCATCTTGGTGAGGATCAATCGCAACGAAC
ATATTTACTAGTGTCTCATTGCGACGTTTTTGGTTAAATTATAGATACTG
ACAAGAACTTGATGGTAATACTGTTCGTTTTTGTGTTGATTTAGTTGGGC
ATTTTGCTAGGTCTGTAAGCATTCAGGCGTACGGCCTAGCTACCCTTCGC
GGGGGTGGGGGGCGTACTCGTGATCACGCATGTTGTACACGGGTCAGATA
TGAATGAGCTCGCATCTTTATAGTGCGGTTGATTCGTAGCACACAACATA
TAACTTCGAAATACGGATAGGTTTGTAGTACAGGCAATAGACGAGCTTTT
TTGGTCACCTGTGCTGTGGTTGAAGTTTTGTTCTCAGCCATGTACCACCT
CCTATTGGTCATGATATAATTTTCCTGGTAAGTGTCCACAGCTGAGATTT
GAGATGAGCTGCATACCCTGAACATGCTCCTGACTTGTCTAATCTTGCTC
AACATCCCCGTTCCCCTCCTCCCCCCTTTAGGAATTCTTAGAAGAGTGGG
CGATGGAAAACCTGGACGAAATCGCGCCGCACATGATAGCGCAGACGAGC
TGCACCAAGGTGTTTGTCAACGGCAACTGGGTGGGTGTGCACCGAGACCC
TAACCGGCTGGTGCAGACGTTGGTGCATCAGCGAAGGGCGTTGGATATTG
ACGTGGAGGTGTCGGTGGTGCGGGACATCAAAGGCAGGGAACTGAGGCTG
TACACGGATGCGGTGAGTTTTTTTGTTTTTTTTTTTGGTTTCAGGTCTCA
GATGCATAGGTCGATTCGTGAGAATTGCGGGGGGGGGGTAGTAAAAGTAG
AATAACTAGGTGAAAATAGAAGACATGCATCGCCCGGACGAGTGCGAATA
GTCCAAGCGTTCGCTAGACAAATGATACAGTATATCGTTGCCTGAGTGTG
AGACTGTGTGGGCACATGAAGTAAAGAAAGGAGCGATCCCTGTATATTGA
TTTGTTTTTTTGTTTTTATTTTGGTGTACAAGGTTATGGGGGCAGATATG
GTAAATGTGCTCATGCTGAACCTTGGAGGCGAATGCTTTATCGCCAGGAA
GGCTCCAAGTATTCGTGTTCGTTCGGGTGATGTAAATATGCCGATAACCA
CGAATCAATTTCACAAATGACAGCTGTATGTACATAAATGAATGTATATG
GCATGCTATGCTATGTGGTTCGTTGTCGGCCGCTCTCATTCGGTCATTTG
GCTTGCTTTTGCTAAAGTGAAACAAACGCCTGTCCTTTTGAAAAAATGTA
ATATGTGTTATCTCTGGAGACAGGGACGAGTGTGCAGACCGCTGTTCGTG
GTGGAGCAGAACCGATTGTGTGTCCGAAAAAAACACATTAATGATCTACA
CGACCCCAACTATGGGTGGACCAATCTCATGCAACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24352:739..3625+

>mRNA_H-paniculata_contig24352.6596.1 ID=mRNA_H-paniculata_contig24352.6596.1|Name=mRNA_H-paniculata_contig24352.6596.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1602bp|location=Sequence derived from alignment at H-paniculata_contig24352:739..3625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCAAGAAGAGGCTGGATCTGGCGGGGGCCTTGCTCGCGGGACTGTTCCG
ACAACTGTTCCGAAAGCTGACGCAAAACGTGAGGAAATATTTGCAGCTTT
GTCTCGACAAGAGCACACAGTTCGTCGTAGGAACGGCCATCAAGAGCCAG
GGCAAGAAGAGGCTGGATCTGGCGGGGGCCTTGCTCGCGGGACTGTTCCG
ACAACTGTTCCGAAAGCTGACGCAAAACGTGAGGAAATATTTGCAGCTTT
GTCTCGACAAGAGCACACAGTTCGTCGTAGGAACGGCCATCAAGAGCCAG
TTCATCACGGACGGGTTGAAGTACTCTCTGGCGACGGGCAACTGGGGAGA
CAAGAAGGATGCCACCAAGGCGGGCGTGAGTCAGGTGTTGAATCGACTCA
CGTACGCCTCCGCGCTGTCTCACTTGAGAAGGCTCAACACGCCGCTGGGG
CGAGAGGGAAAGCAGTTCATCACGGACGGGTTGAAGTACTCTCTGGCGAC
GGGCAACTGGGGAGACAAGAAGGATGCCACCAAGGCGGGCGTGAGTCAGG
TGTTGAATCGACTCACGTACGCCTCCGCGCTGTCTCACTTGAGAAGGCTC
AACACGCCGCTGGGGCGAGAGGGAAAGCAGGCCAAGCCTCGACAACTGCA
CAACACCCACTGGGGCTTCATATGCCCCGCCGAGACACCCGAGGGGCAAG
CGGTGGGACTGGTGAAGAATCTAGCTCTTATGGCGTACATCAGCGTTGGG
TGCTCTCTTTCGCCCATCTTGGCCAAGCCTCGACAACTGCACAACACCCA
CTGGGGCTTCATATGCCCCGCCGAGACACCCGAGGGGCAAGCGGTGGGAC
TGGTGAAGAATCTAGCTCTTATGGCGTACATCAGCGTTGGGTGCTCTCTT
TCGCCCATCTTGGAATTCTTAGAAGAGTGGGCGATGGAAAACCTGGACGA
AATCGCGCCGCACATGATAGCGCAGACGAGCTGCACCAAGGTGTTTGTCA
ACGGCAACTGGGTGGGTGTGCACCGAGACCCTAACCGGCTGGTGCAGACG
TTGGTGCATCAGCGAAGGGCGTTGGATATTGACGTGGAGGTGTCGGTGGT
GCGGGACATCAAAGGCAGGGAACTGAGGCTGTACACGGATGCGGAATTCT
TAGAAGAGTGGGCGATGGAAAACCTGGACGAAATCGCGCCGCACATGATA
GCGCAGACGAGCTGCACCAAGGTGTTTGTCAACGGCAACTGGGTGGGTGT
GCACCGAGACCCTAACCGGCTGGTGCAGACGTTGGTGCATCAGCGAAGGG
CGTTGGATATTGACGTGGAGGTGTCGGTGGTGCGGGACATCAAAGGCAGG
GAACTGAGGCTGTACACGGATGCGGGACGAGTGTGCAGACCGCTGTTCGT
GGTGGAGCAGAACCGATTGTGTGTCCGAAAAAAACACATTAATGATCTAC
ACGACCCCAACTATGGGTGGACCAATCTCATGCAACAGGGACGAGTGTGC
AGACCGCTGTTCGTGGTGGAGCAGAACCGATTGTGTGTCCGAAAAAAACA
CATTAATGATCTACACGACCCCAACTATGGGTGGACCAATCTCATGCAAC
AG
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