mRNA_H-paniculata_contig24320.6590.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24320.6590.1
Unique NamemRNA_H-paniculata_contig24320.6590.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24320.6590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24320contigH-paniculata_contig24320:306..2070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1765
Cds size1422
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24320.6590.1prot_H-paniculata_contig24320.6590.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24320 346..1767 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.9481304-UTR-H-paniculata_contig24320:305..3451622929701.9481304-UTR-H-paniculata_contig24320:305..345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24320 306..345 +
1691480973.2517803-UTR-H-paniculata_contig24320:305..3451691480973.2517803-UTR-H-paniculata_contig24320:305..345Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24320 306..345 +
1622929701.97918-UTR-H-paniculata_contig24320:1767..20701622929701.97918-UTR-H-paniculata_contig24320:1767..2070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24320 1768..2070 +
1691480973.2822068-UTR-H-paniculata_contig24320:1767..20701691480973.2822068-UTR-H-paniculata_contig24320:1767..2070Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24320 1768..2070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.9678738-CDS-H-paniculata_contig24320:345..17671622929701.9678738-CDS-H-paniculata_contig24320:345..1767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24320 346..1767 +
1691480973.2711966-CDS-H-paniculata_contig24320:345..17671691480973.2711966-CDS-H-paniculata_contig24320:345..1767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24320 346..1767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24320.6590.1

>prot_H-paniculata_contig24320.6590.1 ID=prot_H-paniculata_contig24320.6590.1|Name=mRNA_H-paniculata_contig24320.6590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=474bp
MIFSPAASSAARSVSGICWFSRELKALGHDDLWKIAKSSGRCVSYQVCAK
PSHQLTVALVRSPRDNPQSAARSLSFPGQRAELCSTGYAHLPSKGLLAPN
SGAHRWVKARNEKMGKTRARNTRPGLQSQPWYIMQQLKEAGFRRDWRQVE
LVLSDALVASDVDSLRASNAAINALGRCARWDKALNLLIKMQAKGIYPDV
VSYNSAMKACSNCRQWEKAVDLLVEMQTKGVSPNAVSYNTAMKAYGSGAQ
WEKALDLLTEMEAKDISPDVVSYTSAMKACGDCGQWGKTLDLLTEMQAKG
ISPNVVSYSSAMTACGKGGQWQKTLDLFAEMQAKGVSPNVVSYTSAMEAY
GDSGQWEKTLGLLGEMRAKGVPPDVVSYTAAIKTCRDCRQWENALGLLAE
MQAKGISPKAVTYNLTIAACSKAGQWSKALAVLDEMKANGISSVDISYGS
AVKACRDAGRYIEADRVLKEMRP*
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mRNA from alignment at H-paniculata_contig24320:306..2070+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24320.6590.1 ID=mRNA_H-paniculata_contig24320.6590.1|Name=mRNA_H-paniculata_contig24320.6590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1765bp|location=Sequence derived from alignment at H-paniculata_contig24320:306..2070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCAATTGAGTAACCTCTCCGATTTTTTACGTGGAAGAATGATCTTTT
CGCCCGCCGCGAGTAGTGCGGCACGATCTGTTAGCGGAATCTGCTGGTTC
TCGCGTGAGCTGAAAGCGTTGGGTCATGATGATCTGTGGAAGATTGCTAA
ATCATCGGGACGCTGCGTTTCATACCAGGTATGCGCTAAGCCATCGCACC
AATTGACGGTAGCGCTAGTCCGCTCACCTCGAGACAACCCACAAAGTGCG
GCGCGGTCACTTTCTTTTCCTGGACAACGCGCTGAATTGTGCTCGACAGG
ATATGCACATTTGCCATCAAAAGGCTTGTTGGCCCCTAATTCGGGTGCTC
ACCGATGGGTGAAGGCCCGCAATGAGAAAATGGGTAAGACGAGAGCACGC
AACACGCGCCCGGGCCTGCAATCTCAACCGTGGTATATCATGCAGCAGCT
GAAGGAGGCAGGGTTCCGGAGAGACTGGCGGCAAGTGGAGCTTGTTTTGT
CGGACGCGCTCGTAGCTTCCGACGTGGACTCTTTGCGCGCATCCAATGCT
GCCATCAATGCTCTGGGTAGGTGTGCCCGGTGGGACAAGGCTTTGAATCT
GTTGATCAAAATGCAGGCAAAGGGTATTTATCCAGACGTGGTGAGCTACA
ATTCAGCCATGAAGGCATGCAGCAACTGCAGGCAGTGGGAGAAGGCCGTG
GATCTGTTGGTGGAGATGCAGACGAAGGGTGTCTCTCCCAACGCAGTGAG
CTACAACACGGCCATGAAGGCATACGGTAGCGGCGCGCAGTGGGAGAAGG
CTTTGGATCTTTTGACGGAGATGGAGGCGAAGGATATCTCTCCTGACGTA
GTGAGCTATACCTCGGCGATGAAGGCATGCGGAGATTGCGGGCAGTGGGG
GAAGACTTTGGATCTTTTGACAGAGATGCAAGCAAAGGGAATCTCTCCCA
ATGTAGTGAGCTACAGCTCGGCCATGACGGCATGTGGCAAAGGCGGACAG
TGGCAGAAAACATTGGATCTATTTGCCGAGATGCAGGCGAAGGGTGTTTC
TCCCAACGTAGTGAGCTATACCTCGGCTATGGAGGCATACGGCGACAGCG
GGCAGTGGGAGAAAACTTTGGGGCTATTGGGGGAGATGCGAGCGAAAGGC
GTCCCTCCGGATGTAGTGAGCTACACTGCGGCAATAAAGACATGCAGGGA
TTGCCGACAGTGGGAGAATGCTTTAGGTCTATTGGCCGAGATGCAAGCAA
AAGGTATCTCTCCCAAAGCAGTGACCTACAACTTGACCATTGCGGCATGC
AGCAAGGCTGGGCAATGGAGCAAAGCTTTAGCTGTGTTGGACGAGATGAA
GGCAAACGGCATTTCCTCGGTCGATATCAGTTACGGCTCGGCCGTCAAAG
CGTGCAGGGACGCCGGACGATATATAGAAGCTGACCGCGTATTGAAAGAG
ATGCGGCCGTAAACAAAACAACCCTAACAATGGGCTTAAGCAGTGTCTCG
TATTGACGCTGGTCCCTTACGTTTGTGCGCAACGAGAGATCTGGAGCGAC
AGCAAGGGGCAACGTTTATGTAGATAATATACGAGTCCTCCCAACTGTCT
CGATCCAGTCGATAATATACTCATTGTTGAACCGTATCAGTACTTTGCAG
CGGTCTTTTGTACTACGCCTATCGATTCAACGCACACTCCAGTGCTTCTG
TCTCCCTTACCCAATGTCTTCAACCTGTGTGTGTGTTGTTTCGACTGCCT
TGAGGGAAAACAGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig24320:306..2070+

>mRNA_H-paniculata_contig24320.6590.1 ID=mRNA_H-paniculata_contig24320.6590.1|Name=mRNA_H-paniculata_contig24320.6590.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2844bp|location=Sequence derived from alignment at H-paniculata_contig24320:306..2070+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCTTTTCGCCCGCCGCGAGTAGTGCGGCACGATCTGTTAGCGGAAT
CTGCTGGTTCTCGCGTGAGCTGAAAGCGTTGGGTCATGATGATCTGTGGA
AGATTGCTAAATCATCGGGACGCTGCGTTTCATACCAGGTATGCGCTAAG
CCATCGCACCAATTGACGGTAGCGCTAGTCCGCTCACCTCGAGACAACCC
ACAAAGTGCGGCGCGGTCACTTTCTTTTCCTGGACAACGCGCTGAATTGT
GCTCGACAGGATATGCACATTTGCCATCAAAAGGCTTGTTGGCCCCTAAT
TCGGGTGCTCACCGATGGGTGAAGGCCCGCAATGAGAAAATGGGTAAGAC
GAGAGCACGCAACACGCGCCCGGGCCTGCAATCTCAACCGTGGTATATCA
TGCAGCAGCTGAAGGAGGCAGGGTTCCGGAGAGACTGGCGGCAAGTGGAG
CTTGTTTTGTCGGACGCGCTCGTAGCTTCCGACGTGGACTCTTTGCGCGC
ATCCAATGCTGCCATCAATGCTCTGGGTAGGTGTGCCCGGTGGGACAAGG
CTTTGAATCTGTTGATCAAAATGCAGGCAAAGGGTATTTATCCAGACGTG
GTGAGCTACAATTCAGCCATGAAGGCATGCAGCAACTGCAGGCAGTGGGA
GAAGGCCGTGGATCTGTTGGTGGAGATGCAGACGAAGGGTGTCTCTCCCA
ACGCAGTGAGCTACAACACGGCCATGAAGGCATACGGTAGCGGCGCGCAG
TGGGAGAAGGCTTTGGATCTTTTGACGGAGATGGAGGCGAAGGATATCTC
TCCTGACGTAGTGAGCTATACCTCGGCGATGAAGGCATGCGGAGATTGCG
GGCAGTGGGGGAAGACTTTGGATCTTTTGACAGAGATGCAAGCAAAGGGA
ATCTCTCCCAATGTAGTGAGCTACAGCTCGGCCATGACGGCATGTGGCAA
AGGCGGACAGTGGCAGAAAACATTGGATCTATTTGCCGAGATGCAGGCGA
AGGGTGTTTCTCCCAACGTAGTGAGCTATACCTCGGCTATGGAGGCATAC
GGCGACAGCGGGCAGTGGGAGAAAACTTTGGGGCTATTGGGGGAGATGCG
AGCGAAAGGCGTCCCTCCGGATGTAGTGAGCTACACTGCGGCAATAAAGA
CATGCAGGGATTGCCGACAGTGGGAGAATGCTTTAGGTCTATTGGCCGAG
ATGCAAGCAAAAGGTATCTCTCCCAAAGCAGTGACCTACAACTTGACCAT
TGCGGCATGCAGCAAGGCTGGGCAATGGAGCAAAGCTTTAGCTGTGTTGG
ACGAGATGAAGGCAAACGGCATTTCCTCGGTCGATATCAGTTACGGCTCG
GCCGTCAAAGCGTGCAGGGACGCCGGACGATATATAGAAGCTGACCGCGT
ATTGAAAGAGATGCGGCCGTAAATGATCTTTTCGCCCGCCGCGAGTAGTG
CGGCACGATCTGTTAGCGGAATCTGCTGGTTCTCGCGTGAGCTGAAAGCG
TTGGGTCATGATGATCTGTGGAAGATTGCTAAATCATCGGGACGCTGCGT
TTCATACCAGGTATGCGCTAAGCCATCGCACCAATTGACGGTAGCGCTAG
TCCGCTCACCTCGAGACAACCCACAAAGTGCGGCGCGGTCACTTTCTTTT
CCTGGACAACGCGCTGAATTGTGCTCGACAGGATATGCACATTTGCCATC
AAAAGGCTTGTTGGCCCCTAATTCGGGTGCTCACCGATGGGTGAAGGCCC
GCAATGAGAAAATGGGTAAGACGAGAGCACGCAACACGCGCCCGGGCCTG
CAATCTCAACCGTGGTATATCATGCAGCAGCTGAAGGAGGCAGGGTTCCG
GAGAGACTGGCGGCAAGTGGAGCTTGTTTTGTCGGACGCGCTCGTAGCTT
CCGACGTGGACTCTTTGCGCGCATCCAATGCTGCCATCAATGCTCTGGGT
AGGTGTGCCCGGTGGGACAAGGCTTTGAATCTGTTGATCAAAATGCAGGC
AAAGGGTATTTATCCAGACGTGGTGAGCTACAATTCAGCCATGAAGGCAT
GCAGCAACTGCAGGCAGTGGGAGAAGGCCGTGGATCTGTTGGTGGAGATG
CAGACGAAGGGTGTCTCTCCCAACGCAGTGAGCTACAACACGGCCATGAA
GGCATACGGTAGCGGCGCGCAGTGGGAGAAGGCTTTGGATCTTTTGACGG
AGATGGAGGCGAAGGATATCTCTCCTGACGTAGTGAGCTATACCTCGGCG
ATGAAGGCATGCGGAGATTGCGGGCAGTGGGGGAAGACTTTGGATCTTTT
GACAGAGATGCAAGCAAAGGGAATCTCTCCCAATGTAGTGAGCTACAGCT
CGGCCATGACGGCATGTGGCAAAGGCGGACAGTGGCAGAAAACATTGGAT
CTATTTGCCGAGATGCAGGCGAAGGGTGTTTCTCCCAACGTAGTGAGCTA
TACCTCGGCTATGGAGGCATACGGCGACAGCGGGCAGTGGGAGAAAACTT
TGGGGCTATTGGGGGAGATGCGAGCGAAAGGCGTCCCTCCGGATGTAGTG
AGCTACACTGCGGCAATAAAGACATGCAGGGATTGCCGACAGTGGGAGAA
TGCTTTAGGTCTATTGGCCGAGATGCAAGCAAAAGGTATCTCTCCCAAAG
CAGTGACCTACAACTTGACCATTGCGGCATGCAGCAAGGCTGGGCAATGG
AGCAAAGCTTTAGCTGTGTTGGACGAGATGAAGGCAAACGGCATTTCCTC
GGTCGATATCAGTTACGGCTCGGCCGTCAAAGCGTGCAGGGACGCCGGAC
GATATATAGAAGCTGACCGCGTATTGAAAGAGATGCGGCCGTAA
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