mRNA_H-paniculata_contig2430.6588.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2430.6588.1
Unique NamemRNA_H-paniculata_contig2430.6588.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: D7FLW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW5_ECTSI)

HSP 1 Score: 330 bits (846), Expect = 3.050e-110
Identity = 175/246 (71.14%), Postives = 201/246 (81.71%), Query Frame = 1 
Query:   25 GYVVDSKVGHC-GLETLPRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMA--GEEEDSPQLDGGG--GAEGSVELESG----HKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            GY V+   G C GLE LP L+NRY+ALRHGQSVANMEGIISS+P++GS+ HGLTSNG++QAR AAT+LIE VGRDR+DSLVF+SS FLRARQTAE+CRAAL  I++FER AMA  G + D    DG G  G +G   L+ G    +  SPPLVIRQELRER+FGELDGTILVNYNKVWPEDLKDG Q GYGVESVCDVA+R+G LVR+LER+Y+D  IV SSHADTLQI QC+IAGADERLFSQ R
Sbjct:   89 GYKVEES-GRCTGLEALPPLKNRYYALRHGQSVANMEGIISSNPKVGSVKHGLTSNGRSQARVAATALIEAVGRDRLDSLVFVSSEFLRARQTAEECRAALQNILSFERAAMAMGGGKGDDAAADGTGAEGGDGEFSLDEGSMGGYDVSPPLVIRQELRERAFGELDGTILVNYNKVWPEDLKDGMQEGYGVESVCDVASRVGRLVRALERDYEDADIVLSSHADTLQIAQCYIAGADERLFSQYR 333
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BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A836CKV0_9STRA (Histidine phosphatase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKV0_9STRA)

HSP 1 Score: 270 bits (689), Expect = 9.400e-88
Identity = 144/245 (58.78%), Postives = 173/245 (70.61%), Query Frame = 1 
Query:    7 TEPAARGYVVDSKVGHCGLETLPRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELES-GHKFS-PPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            T   A GY++   +G   +  LP LQNRYFALRHGQSVANMEGIISSDP +G++ HGLT++G+ QAR AAT LIE VGR+ +D L+FISS F RAR+TAE+CRAA+++I  FERE                 A  ++ L+  G  F  PP VIRQELRER FGELDGT+L+NYNKVWP DL D R  GYGVESV DV AR+  L  SLE +Y    +V +SHADTLQI QC++AGADERLFSQ R
Sbjct:   11 TLQGAAGYLLKDTIGRSTVPRLPLLQNRYFALRHGQSVANMEGIISSDPAVGTVKHGLTTSGKVQARVAATQLIEAVGREALDDLIFISSDFTRARETAEECRAAVVRITEFEREER---------------AVSTLLLQVIGETFECPPAVIRQELRERYFGELDGTVLLNYNKVWPADLIDSRHAGYGVESVQDVCARMQRLFLSLEEQYAGKCMVLTSHADTLQIMQCYVAGADERLFSQYR 240
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BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A6V1VLS3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VLS3_HETAK)

HSP 1 Score: 213 bits (541), Expect = 8.800e-65
Identity = 116/235 (49.36%), Postives = 153/235 (65.11%), Query Frame = 1 
Query:   37 DSKVGHCGLETLPRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRD--RVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            D   G+  +  LP L+N Y+ALRHGQS+AN+EGIISSD  +G+  HGLTS+G+AQAR AA  L+  +  D    + LVFISS F RAR+TAE+   A+ +I+ +E E +A E                +  E+      PL I   LRER FGELDGT+L NYNKVWPED+++ +  GYGVESV DV  RI   +  ++++YQ+ +IV +SHADTLQI QC++AG D RLFSQ R
Sbjct:   65 DPSNGYVTVPILPPLRNSYYALRHGQSLANLEGIISSDVLVGTTRHGLTSSGRAQARKAAVPLLSMIAGDGFTFEDLVFISSNFTRARETAEETIRAIDRIIEYEEEPVATE----------------LPSENVPSHQIPLAIFPGLRERYFGELDGTVLPNYNKVWPEDVQNAQHSGYGVESVNDVCRRIEETILEIDQQYQNKAIVLTSHADTLQITQCYLAGVDPRLFSQYR 283
[Close]
BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A7S0DJZ6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DJZ6_9EUKA)

HSP 1 Score: 196 bits (497), Expect = 2.090e-57
Identity = 112/241 (46.47%), Postives = 150/241 (62.24%), Query Frame = 1 
Query:   13 PAARGYVVDSKVGHCGLETLPRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            P+A G  +D  V       LP+L+NRYFALRHG+S+AN+EGIISS+ + G+  HGLT+ G+ QAR +AT L+E +GRD ++ LV  SS F RAR+TA +C +A+ +IV FE E               GG  G +         PPL I   L ER FGELD T + NYN VWP DL D +   +GVESV  V  R+ +++  +E ++ + +I+ +SHADTLQI QC+IA  D RLFSQ R
Sbjct:  131 PSAVGSGIDVPV-------LPKLKNRYFALRHGESLANLEGIISSNYDTGTTIHGLTTMGKMQARQSATVLLECIGRDGLEHLVVYSSNFTRARETAFECVSAMQRIVDFESEV--------------GGWSGRI---------PPLEIEDRLIERGFGELDTTEVTNYNYVWPLDLYDAKHSAFGVESVESVCRRVRSMIVDMEAKHTNQNILLTSHADTLQIMQCYIAQIDPRLFSQYR 341
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BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A7S4DTI5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DTI5_9EUKA)

HSP 1 Score: 196 bits (498), Expect = 7.380e-57
Identity = 111/239 (46.44%), Postives = 140/239 (58.58%), Query Frame = 1 
Query:   19 ARGYVVDSKVGHCGLETLPRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            A G V ++  G   ++ LPRL+NRYFALRHG+S AN+ GIISS+ E GS  HGLT  G  QAR AAT L+E +GRD V  L+  SS F RARQTA +C  A+  I+ +E     G ++  P                    S  + I   L ER FGELD T + NYN VWP DL D     +GVE+V  V AR+  L+  LE+ +    I+ +SHADTLQI QC++AG D RLFSQ R
Sbjct:  119 AWGLVPNNANGSIDIQVLPRLRNRYFALRHGESEANLAGIISSNYETGSTIHGLTPKGVTQAREAATFLLETIGRDNVQDLIVYSSNFTRARQTASECMGAVENILEYETALTRGTDKALPSS------------------SSVIHIDNRLIERGFGELDTTKVTNYNYVWPLDLYDAHHTAFGVEAVNSVVARVKELILELEQRHDRKLILLTSHADTLQIMQCYMAGVDPRLFSQYR 339
[Close]
BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A7S0L2B8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L2B8_9EUKA)

HSP 1 Score: 191 bits (485), Expect = 2.470e-56
Identity = 108/221 (48.87%), Postives = 138/221 (62.44%), Query Frame = 1 
Query:   73 PRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            PRL+NRYFALRHGQS AN+EGIISSDP +G++ HGLT  G+ QAR AAT LI+ VGR+++D L F SS F RA QTA++  A ++ ++ +E  AM  +E+ S  L           L +G + +P L      RER FGEL+   L+NY KVWP DL       + VESV  VA R+ + +   E  +   +IV  SHADTLQI QC IAGAD R F Q R
Sbjct:   81 PRLRNRYFALRHGQSEANVEGIISSDPSVGTVIHGLTPMGKLQARRAATKLIDAVGREQLDRLYFYSSDFTRAAQTADEALAGVMNVLQYENAAM--DEDSSAAL--------PEALTAGVRRTPLL------RERYFGELEAQALINYQKVWPRDLVSAAHTSFSVESVEAVAERVRSFILQAEEAHSHATIVLVSHADTLQISQCFIAGADCRTFCQYR 285
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BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A7S4C074_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C074_CHRCT)

HSP 1 Score: 184 bits (467), Expect = 1.140e-53
Identity = 101/219 (46.12%), Postives = 134/219 (61.19%), Query Frame = 1 
Query:   79 LQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            L+NRYF LRHGQS AN+ GIISSDP IG+  HGLT+ G+ QAR AAT+L++ VGR+ + S  F SS F RA QTAE+  A ++ ++ +E      +  + P L           L  G K +P +      RER FG+ DGT+L NY +VWP DL   +   +GVESV DV  R+   +  +E ++   +IV  SHADTLQI QC++AGAD R F Q R
Sbjct:   78 LRNRYFGLRHGQSEANVAGIISSDPSIGTTMHGLTALGRLQARRAATTLVDLVGRENLGSTHFYSSDFTRALQTAEEALAGVINLLEYENSVETDDSLELPAL--------PSSLTDGVKVTPLV------RERYFGDFDGTVLSNYQQVWPRDLVSAQHTTFGVESVQDVTRRLRECILQMEEQHDGCTIVLVSHADTLQIAQCYLAGADCRTFCQYR 282
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BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A8J5XRL8_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XRL8_DIALT)

HSP 1 Score: 183 bits (465), Expect = 1.540e-53
Identity = 109/227 (48.02%), Postives = 130/227 (57.27%), Query Frame = 1 
Query:   55 CGLETLPRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            C  E LP L+N YF LRHGQS AN+EGIISSDP +G+I HGLT +G+ QAR AAT LI+ VGR+R+D L F SS F RA QTAE+  +A+  ++ +E      +                VEL         +     LRER FG LDG  L NY  VWP DL       + VESV  VA RI  L+  +E E    SIV +SHADTLQI Q  IAG D R FSQ R
Sbjct:   57 CSTEPLPPLKNCYFGLRHGQSEANVEGIISSDPAVGTIKHGLTLDGRLQARRAATRLIDMVGRERLDRLFFYSSDFTRAWQTAEEALSAVKNVIEYESSLFYPDR---------------VELARVPDSLAGVARTPLLRERWFGSLDGKALRNYQHVWPRDLVSAEHCHFDVESVSAVAQRIRTLILEIEAERTGCSIVLTSHADTLQIAQVFIAGEDPRSFSQYR 268
[Close]
BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A7S3Z1N5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z1N5_9EUKA)

HSP 1 Score: 183 bits (464), Expect = 2.200e-52
Identity = 104/229 (45.41%), Postives = 133/229 (58.08%), Query Frame = 1 
Query:   19 ARGYVVDSKVGHCGLETLPRLQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAG 705
            A G V ++  G   ++ LPRL+NRYFALRHG+S AN+ GIISS+ E GS  HGLT  G  QAR AAT L+E +GRD V  L+  SS F RARQTA +C  A+  I+ +E     G ++  P                    S  + I   L ER FGELD T + NYN VWP DL D     +GVE+V  V AR+  L+  LE+ +    I+ +SHADTLQI QC++AG
Sbjct:  119 AWGLVPNNANGSIDIQVLPRLRNRYFALRHGESEANLAGIISSNYETGSTIHGLTPKGVTQAREAATFLLETIGRDNVQDLIVYSSNFTRARQTASECMGAVENILEYETALTRGTDKALPSS------------------SSVIHIDNRLIERGFGELDTTKVTNYNYVWPLDLYDAHHTAFGVEAVNSVVARVKELILELEQRHDRKLILLTSHADTLQIMQCYMAG 329
[Close]
BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Match: A0A7S0Z5T0_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z5T0_9CRYP)

HSP 1 Score: 171 bits (434), Expect = 2.240e-49
Identity = 99/219 (45.21%), Postives = 131/219 (59.82%), Query Frame = 1 
Query:   79 LQNRYFALRHGQSVANMEGIISSDPEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQTAEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPPLVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAARIGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR 735
            L+NRYFALRHGQS AN++ IISS P  G+  HGLT  G+ QA+ +A  L+E +G   V+ ++F SS F RARQTAE+  AAL +++   R                    GS   +   K    + + + LRER FG+LD TI+ NYNKVWP DLKD +   +GVESV    AR+  ++  LE E++   +V +SHADTLQI Q  +AG D R FSQ R
Sbjct:   33 LRNRYFALRHGQSEANVDNIISSLPARGTTIHGLTGLGRLQAQQSAPRLLEAIGDGHVEKVLFCSSNFTRARQTAEEAAAALKELLRETR--------------------GSATAD---KLDTSVTVIEPLRERWFGDLDNTIITNYNKVWPADLKDAQCVQHGVESVDACCARLSAVILQLEGEHEGRDLVLTSHADTLQILQSWLAGEDPRRFSQFR 228
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2430.6588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLW5_ECTSI3.050e-11071.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CKV0_9STRA9.400e-8858.78Histidine phosphatase superfamily n=1 Tax=Tribonem... [more]
A0A6V1VLS3_HETAK8.800e-6549.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0DJZ6_9EUKA2.090e-5746.47Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S4DTI5_9EUKA7.380e-5746.44Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0L2B8_9EUKA2.470e-5648.87Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4C074_CHRCT1.140e-5346.12Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A8J5XRL8_DIALT1.540e-5348.02Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S3Z1N5_9EUKA2.200e-5245.41Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S0Z5T0_9CRYP2.240e-4945.21Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2430contigH-paniculata_contig2430:192..5157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.7
Seed ortholog evalue1.1e-87
Seed eggNOG ortholog2880.D7FLW5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine phosphatase superfamily (branch 1)
EggNOG OGs28K5R@1,2QSKC@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001440.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size735
Cds size735
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2430.6588.1prot_H-paniculata_contig2430.6588.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2430 192..5157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929701.7685735-CDS-H-paniculata_contig2430:191..2991622929701.7685735-CDS-H-paniculata_contig2430:191..299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 192..299 -
1691480973.1753075-CDS-H-paniculata_contig2430:191..2991691480973.1753075-CDS-H-paniculata_contig2430:191..299Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 192..299 -
1622929701.7830298-CDS-H-paniculata_contig2430:747..8491622929701.7830298-CDS-H-paniculata_contig2430:747..849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 748..849 -
1691480973.1934693-CDS-H-paniculata_contig2430:747..8491691480973.1934693-CDS-H-paniculata_contig2430:747..849Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 748..849 -
1622929701.7998178-CDS-H-paniculata_contig2430:1314..16051622929701.7998178-CDS-H-paniculata_contig2430:1314..1605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 1315..1605 -
1691480973.2034767-CDS-H-paniculata_contig2430:1314..16051691480973.2034767-CDS-H-paniculata_contig2430:1314..1605Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 1315..1605 -
1622929701.8120053-CDS-H-paniculata_contig2430:2320..24261622929701.8120053-CDS-H-paniculata_contig2430:2320..2426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 2321..2426 -
1691480973.215523-CDS-H-paniculata_contig2430:2320..24261691480973.215523-CDS-H-paniculata_contig2430:2320..2426Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 2321..2426 -
1622929701.8295438-CDS-H-paniculata_contig2430:5029..51571622929701.8295438-CDS-H-paniculata_contig2430:5029..5157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 5030..5157 -
1691480973.2240696-CDS-H-paniculata_contig2430:5029..51571691480973.2240696-CDS-H-paniculata_contig2430:5029..5157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2430 5030..5157 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2430.6588.1

>prot_H-paniculata_contig2430.6588.1 ID=prot_H-paniculata_contig2430.6588.1|Name=mRNA_H-paniculata_contig2430.6588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=245bp
MATEPAARGYVVDSKVGHCGLETLPRLQNRYFALRHGQSVANMEGIISSD
PEIGSISHGLTSNGQAQARAAATSLIEQVGRDRVDSLVFISSGFLRARQT
AEQCRAALLKIVAFEREAMAGEEEDSPQLDGGGGAEGSVELESGHKFSPP
LVIRQELRERSFGELDGTILVNYNKVWPEDLKDGRQGGYGVESVCDVAAR
IGNLVRSLEREYQDVSIVFSSHADTLQICQCHIAGADERLFSQVR
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mRNA from alignment at H-paniculata_contig2430:192..5157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2430.6588.1 ID=mRNA_H-paniculata_contig2430.6588.1|Name=mRNA_H-paniculata_contig2430.6588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4966bp|location=Sequence derived from alignment at H-paniculata_contig2430:192..5157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACGGAGCCTGCTGCACGAGGATACGTCGTGGATTCGAAGGTGGG
GCATTGTGGACTGGAGACTCTCCCGCGCTTGCAAAATCGATATTTTGCGC
TTCGGCATGGGCAAAGCGTGGCAAACATGTGAGTCTACTGGGTCTGTGCT
TTGTATGTTGGATATAGCCCTCCAGGAGTACGCCCAGGTTTCATGTACTG
CTTATATTCAGGTGGTACGTCATCAGTTCGGCGAGAAATTGCAGTGCAGC
GCACAGAATTGCGATACTAAATGGCAAGATCGATGTGGGGGCGAGGGTGG
TGGAGCTCCGCCCCAGTCCCGTTCAGAAGAGTTATCAATACAAGGTTTTA
GAGGTGATGCGGTATCGCTCAAAGATCGCCAGTCAAGACCTTTTGGCGCT
CAACAACAAAGTCAATTCATGGAATCATAATTGATTCGTGCAGAATTAGA
ATGGTACCGCGGTTCTGTGCTCCTTTACTCCCGATGATACTAGGATGGAT
AAAGAACAGCAAAACAGGAAACGATAATACCGTACGGACATCATTGGCTA
AGGCAAGTGACCTCCAGCCCGCGTGGTGAGTTTACCCTGTTCGATCGTAA
AAAAAGGTTGATTTTTGCCATGATTAGCTTTTGATTCTTGTTGTATGCGA
ATTTGCCTTCCAGGAAGAGCCTCCAGACCTAACCTGAATCCTAGCCCCGA
CCCTACCGCTTACACTAGCCGTTCGCGGGTGAAATGGCTCCTGTAGCCTC
TAAAACCGGCCAAATGTGGCAGCGCTTCGTGGCGTGCATAGCAACCACCA
AGGGGCCGCACCCGAAATATATAGTCTTATTTACGATCGTCTGTCGAGAT
AATTCGTCAAAATAATCCATGGCTGATTTGAGTTTTGTTGGATCCTAATC
CCGCCCTCGACAGATGGTTGTAGAAACATTACTGAAAATAGTGCCCGCTC
AAACGAAATCTTGCTTTTGTTCGCGAAACTAAAAATGTATTGCAGGTGAA
GGCTTAATAGACATGTGCCCCACTCGATCGGACGTTCATAGAAGCCCTCC
TCCCATCTCACATGCCGCTCTATCGGAATATTGAATGGGCGCTGACCTCA
CCCGTCTGCACAAGGCCGGGATAATATCGGAAATTACTAACTCTTATGGC
ACCGAACAGTGTCCAGTCCCTCGCAAATCCCTCCTCGAAAAACAGGCCAA
CACCACCTCAGGCTTTTTGGGGATAAACGCCCACGGCATGATCACGGGGG
TGGAGAGCTAGCCCTACAGAGAGTATAAACGGCCCTATAATTGTTACAGG
CACAGAGTCAGGAGTTGGGATGGTTTTGCGTTCCACGACAGCAGCACTTG
ATCGAAACGCGAAGCATAAATCATATCATGAGTGACTGTCTGCCGCACAA
AGCCACATACGAGGACATGAACCAAACACACCATGGTTTTCACGGCGCTG
TTCTGACGCTCGCAAATAGAGTAGAAAGCATAATACAGAAATCGTTTTCG
TCCAATTAAATCTATGTGGTTGTTAAAATCATTGGCCACAGCCACAGTTG
CAGGGTACTCAGGCATACGATGCGTTGTCATTGCTCTCGTCGTCGCCATC
GATACTACGCCTATGCTGCGCCCACTATACGCAACTAGATACAGAAAACG
TAGCAAAAAAACACACGGTAGCCCGATAAATGAAACGATAAAGAGGCTTC
ACGTTTGCTCGACTCCGCCAACCCGCCGGAGGATCCCTCTAAAGATTTTG
TGACTCCAAAACAACTTCACTGGTACATGGGAGAAGATATGCTTTTCATT
GGCCATCGGGTGAATGATTGGTTTGACTATGTTTTTTGTGTACAATCCGC
TCCCATACTCCAGCACCGCGAGGTCGGAAGCCATCACCCTCCCTCGTCAT
GGAAAAGAAACCCTCCACCTTTTTTGTTGCGGCACTATCAGATATATTAA
TTGGTCTTTTTCAGTCTCCGGTGCCGCACGGGTTACGGGTAGTTCGAGAA
TTTGCAGGCTAATCCATTGGAAAGTGCGTCGCCATCCTATGGCTGGTTGG
CATCAATTGGTGATCAAGATGTCTGTCTTAACACACGGTCCGTTTCTAGA
AGGTTTGTTTACCACTGTTTGTCAAAAATACCCACATGATTGGTTTGAGT
TATCTTCTCGTCGAAATTGCGGACGAGCAACGCTGCGAGGCTCGTTCTAG
CCCTTACAGTAACCTTTACCTTCAGCCTATCTTGGATCAAACCGGGCCAC
GGTAGAATGTATAATCGCCCATACACTACGCCGTTCTGCTTTTTGGTAGC
AACCCTTGAACCAGGTCCTCGGGAGGGTCGTGTAGTGTTCACCGTGGTAA
AATCAAAAAGTCAAATATTGCAAACATGATCTGGCAACCATGTCTATTTT
AGACAGACATGTATATACTACTGGGTTCTCAGTCTCTACACATTGGAACC
TTTTGGCCAGAAGACACGCAACGACCTGCTGTCAGTCCGTCACACTCTCA
TCCACTTTCGACCTACGATGAGCAATGTATCTAATGTACACGATGGCGTG
CGTTCATTGATGGGTGTTGCTATGTCGCCCGTCTTCCTTGACATACTCAA
GAAAGCGCATGCAGGAACGTGTAGGAGCTTTGGCTATTGTATCATCAGCT
CACAAATTTGAGTTATGGCAAACCCCAGAGACATGGCGCCTGCCTTACGC
GCTCAACCCTTGTCCCCTGTGGATTTTTCAGGGAGGGGATTATATCGAGC
GACCCTGAGATAGGAAGCATAAGCCACGGCCTTACGTCCAACGGCCAGGC
GCAAGCCAGGGCCGCCGCCACTTCGTTAATAGAACAGGTGAGCTAATGGA
GTGTGAATTTCATAATATCCTGTATATATTGTCCTTCTCTCTTCAGGTGA
TCGATGTGGTGCTGAGACGGATGGTTTTTTGTGTTCGTAACGTTTTTATC
CCATGTCATCGCGCGGTGCAGTGTATTCAACATGTTACAAGCATTTAAGG
TGTGCGTCGAGCCTGTCTGTTCCCATTGCTCGAGTTTCGTTGTCTTTCAA
CGTTTACAGGTGACAGGCCTGAGATTCGCAACGGTCGTATTTTCTTCGGA
TAGGATTCACAATACAGCAATATAGTGCGTATAGGGTGACGCGAACCTAA
GCGAGGGTTGTAGTCAGCCGGCAGCGTTGCAATAGCCAGACTGCGAGCCA
ACACTCTCGTGTTGCAGCTTGGCCATCTGGGAGAGGACTGAATATCTATC
CCACTACTGAAATAAGGTAGTGGGATATGTATACCTCTGATAATCACGGT
CGTCTGCGTCACTTTCGCTATCTCACAGCCCCAGAGATGAGAGCGACGTG
GCGGGTACTTTCGCATGCTTGGCCGCGACCGCCCGCACACACCGGAGCTA
CGGCAACTCACTTGCCTCAAACCCTACCTTGCCCCGCCTATTTTTTTTCG
GTTTATAGATAATAACAAGTAATCCAGCAGCTTGAAAATGCTAAGCACCT
ACATTGCCCCCCCCCGTTTGTGTTGTTTCCACCCCCTACTCCCGCGACGA
AGGTCGGGCGCGATAGAGTAGATTCCCTTGTTTTTATCTCGAGCGGGTTT
CTTAGAGCACGACAGACAGCCGAGCAGTGCCGTGCGGCCCTGCTAAAAAT
CGTCGCGTTTGAACGGGAGGCGATGGCGGGTGAAGAAGAGGATTCTCCTC
AGCTAGACGGGGGGGGAGGGGCGGAAGGTTCGGTAGAGTTGGAAAGTGGA
CACAAGTTTTCCCCACCTCTTGTGATTAGGCAGGAGCTGCGGGAGCGATC
ATTTGGGGAGCTAGATGGTACCATTCTGGTGAACTACAACAAGGTGCGAG
TCGATCATGTTTGTATATTAGTATATATATGCTGGGTGTGGTCTGGTGCT
CTTGTATATATTGGCCATGCTTTTTTGTGCTGGAATTATTTAGGTCCTGT
TGTTTGAGCAACCGAGCACATCCTTTATGTCTGTAAATTTAAGGATGGTG
CGTTTCGATTTTCGATTTTCTTAGATGCAAAAGAGAACAAATGCATCTTG
CGTTAACAAGAGAGCTGCACACGCGGTGGTTTCTCCTCCTCATTGTATTT
CCGGCGGTATCTCCCAAATTTCTTCGAAGACTAGTCATCCATCTTCGCTA
CATTCCAAGCGAACACGGTCATTACTTTTGAAATTTCGTGCTGTGTTATG
CGGCTTTCATTTCGTTCGCCGCAGTACCCTCTACATGGCACGTAGCCGTG
ATTGTTGATATTAGTATATGGTGATGTCAGTTGGTTCATGTTCTCCCGGA
ACTGACAGGTTTGGCCTGAGGATTTGAAGGATGGTAGGCAGGGAGGCTAT
GGTGTGGAGAGCGTGTGCGACGTCGCAGCTCGCATTGGTAATCTCGTCCG
ATCGCTCGAGGTGACGAAAAACGGCGCTTTGGGTTTAGAGGAAGAACGAG
GATTGCTTTCATGTCGTTTTGTGTATTATGCCATCGTCGTACGGTTGTAC
GTCTTGAAAAATAAGCACAGCACGTTACTGAATACGCCGTTCCCACCAGA
TTCAGCCCACTCTCGATGTTCCTTAGAAGCCCGGTCGCAGTAGATATGTT
ACCACTTTCAATGACTCTTTAAAGACCGTCTGTAGCAAGTTTGAACCCAT
TCTCTATATAGGAGTTTAATGAGCGAGGTCCCCCCGTCTTTTGTTTTACT
ACTAAAGCCTGTCATCACACACACACACACACACACACACACACACACAT
ACAATATGCGCAGATGCTTTATCCCTGGATGGTCTTCCCTTCTTTGGAAT
ATCGTGTTTTCTGTTCCCTGTTCCGATTTTGTGTCATTTCGTTCCGTTCC
ACGTGCAGCGAGAATACCAGGACGTCTCGATCGTGTTCTCGTCACACGCG
GACACCTTGCAGATCTGCCAGTGCCATATTGCCGGTGCCGATGAACGATT
ATTTTCTCAGGTACGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2430:192..5157-

>mRNA_H-paniculata_contig2430.6588.1 ID=mRNA_H-paniculata_contig2430.6588.1|Name=mRNA_H-paniculata_contig2430.6588.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1470bp|location=Sequence derived from alignment at H-paniculata_contig2430:192..5157- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACGGAGCCTGCTGCACGAGGATACGTCGTGGATTCGAAGGTGGG
GCATTGTGGACTGGAGACTCTCCCGCGCTTGCAAAATCGATATTTTGCGC
TTCGGCATGGGCAAAGCGTGGCAAACATATGGCGACGGAGCCTGCTGCAC
GAGGATACGTCGTGGATTCGAAGGTGGGGCATTGTGGACTGGAGACTCTC
CCGCGCTTGCAAAATCGATATTTTGCGCTTCGGCATGGGCAAAGCGTGGC
AAACATGGAGGGGATTATATCGAGCGACCCTGAGATAGGAAGCATAAGCC
ACGGCCTTACGTCCAACGGCCAGGCGCAAGCCAGGGCCGCCGCCACTTCG
TTAATAGAACAGGGAGGGGATTATATCGAGCGACCCTGAGATAGGAAGCA
TAAGCCACGGCCTTACGTCCAACGGCCAGGCGCAAGCCAGGGCCGCCGCC
ACTTCGTTAATAGAACAGGTCGGGCGCGATAGAGTAGATTCCCTTGTTTT
TATCTCGAGCGGGTTTCTTAGAGCACGACAGACAGCCGAGCAGTGCCGTG
CGGCCCTGCTAAAAATCGTCGCGTTTGAACGGGAGGCGATGGCGGGTGAA
GAAGAGGATTCTCCTCAGCTAGACGGGGGGGGAGGGGCGGAAGGTTCGGT
AGAGTTGGAAAGTGGACACAAGTTTTCCCCACCTCTTGTGATTAGGCAGG
AGCTGCGGGAGCGATCATTTGGGGAGCTAGATGGTACCATTCTGGTGAAC
TACAACAAGGTCGGGCGCGATAGAGTAGATTCCCTTGTTTTTATCTCGAG
CGGGTTTCTTAGAGCACGACAGACAGCCGAGCAGTGCCGTGCGGCCCTGC
TAAAAATCGTCGCGTTTGAACGGGAGGCGATGGCGGGTGAAGAAGAGGAT
TCTCCTCAGCTAGACGGGGGGGGAGGGGCGGAAGGTTCGGTAGAGTTGGA
AAGTGGACACAAGTTTTCCCCACCTCTTGTGATTAGGCAGGAGCTGCGGG
AGCGATCATTTGGGGAGCTAGATGGTACCATTCTGGTGAACTACAACAAG
GTTTGGCCTGAGGATTTGAAGGATGGTAGGCAGGGAGGCTATGGTGTGGA
GAGCGTGTGCGACGTCGCAGCTCGCATTGGTAATCTCGTCCGATCGCTCG
AGGTTTGGCCTGAGGATTTGAAGGATGGTAGGCAGGGAGGCTATGGTGTG
GAGAGCGTGTGCGACGTCGCAGCTCGCATTGGTAATCTCGTCCGATCGCT
CGAGCGAGAATACCAGGACGTCTCGATCGTGTTCTCGTCACACGCGGACA
CCTTGCAGATCTGCCAGTGCCATATTGCCGGTGCCGATGAACGATTATTT
TCTCAGGTACGCCGAGAATACCAGGACGTCTCGATCGTGTTCTCGTCACA
CGCGGACACCTTGCAGATCTGCCAGTGCCATATTGCCGGTGCCGATGAAC
GATTATTTTCTCAGGTACGC
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