mRNA_H-paniculata_contig243.6587.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig243.6587.1 vs. uniprot
Match: D7G6Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI) HSP 1 Score: 328 bits (841), Expect = 9.440e-86 Identity = 446/1235 (36.11%), Postives = 549/1235 (44.45%), Query Frame = 1
Query: 7309 AEESELRSSSSGLSRALRSLVNVVQERETRVAALETELKQERDAARXXXXXXXXXXXXXIEAREMAVHDMEAQMADLXXXXXXXXXXXXXSKEISQDLESQIAMLSRQAEAAAIKAAATVSSLENDLNLSRKDTEVQEQERRDYREEMEGNLAEGHESILVLQGALEHAVNAAGGLLERAEAAASEAERGEVETLEAELRVFERRLPTIRSSRNLRRDTSIGRRSYYDTSRRSSSSPENRRVVFVGGYSRIAIPSLNGSGLPGNPRASWSHP-VVAKDAAQM-----DHSAFRGARSVGSLPRRGSGIQRKREGSFDVVSDGGGLRAEGDGDDVRAWPEFLGLVEAEAVVHRATSEMDEVCFDIEAFVLRQAIARAADMRSSFAQADSRQEAATAAA--VRPVDTEDKKNVLEEAWGGQVGGTEAEERLARLEAEAARAXXXXXXXXXXXXALKTQRETLIRRVAAAEAGAALSRAVAHTANSRSASLSPASTS----------------------------PQTRHATAEPVPSQMTHVAAAAVSTSTIETVAVAEAAETALAAARSDXXXXXXXXXXXXXXXXTLRAGVRISEAEDREQDHRLLLEQQKQEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRERFEGXXXXXXXXXXXXXXXXXRQRLESSLREQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVAAVAAEAVAEATAGLRAEISDITT-RAAAQEALS-AKKAGVELAQLESRLAARIVGLEDELARERKAMQEAERRVERVEARRRGL----------------------------EEGLEAXXXXXXXXXXXXXXXXXXXXXXXXXRQSLEHPLQHAETA-RRLKISGGGGLSNVEDAESSVASSTS------VLELRREVSRVTARAKVLGQRLDETVKRNRWLEKEVAQAVKLGARAEAELGAALAGERMQRDGELTEIKCVVDEMMTLDASASGGGIAGRGRDLFSPPR----------------RGAGGSRRSQAISHQPRSSSEAQHD--------------------------TTLNFMDVGAA-ARLTEAWSLLEASEAARRKLQGEVKSWADRAAKLEGALAAAEAAVEEGAREARLLAASLQDAREGLAAEEGARREAEGRAEALRVMLQAGDWGASGGGASPARGGGGGDVARGLEGQVKALRSRVEELLERAREAEVREVLEKRGRKAAQHALSEL 10665
AEE S SSGLSRALRSLV+ +QER+ R LE E+ + R A + A E A M A++ L ++ +LE+ + S AEAA+ A A V +ERR ++E A+G E +L L+ AL +AA GLLERAEA ++AE GEVETLEAELR ERR P SR T+ R RRS+S P + +P+ G +P SW P + D ++ + + G+R + ++ RG+G R +G DV SDGGG A +EM+E D+E FVLRQ IARA D+R A A+SRQE + AA E W + EA RLA LE A ALK QRE L+RRVA+AEA AAL+RAVA RS++ SP+ P A A+ VPS H AAA ++ + LA ARSD XXXXXXXXXXXXXX R+SE E+ HR LE+Q + E R+R ES EA +G R R A+ L A++ L Q +E A R+A+ AER ER++ +RRGL RQS++ L AE R L + V+D ++ + V+ELR +VSR RA++L +RLDET + NR LE+EVA+AV+LGARAEAELGAALAGER++RDGELTEIK VVDEMMTLD SASGGG+AG DLFSPPR RG+GG+ S + + SS + + TT N V AA ARL EAWSLLE+SEAARR+L EVK+WA R A LE ALAAAEA E AREARLLAA LQDAR+GLA EE ARREAEGRA+ALR MLQAG DVAR L GQVKALRSRVEELLERAR+AEVREVLEKRGRKAAQ AL EL
Sbjct: 3322 AEERSSPSPSSGLSRALRSLVDALQERDARAQLLEDEVTRVRRGA--------------VAAAEAA--SMRAEVETLKASLAA-------TEAERLELETLLEDASHGAEAASRDAKAQXXXXXXXXXXXXXXXXVASEERR----QIEEAFADGQEGLLALREALGRTGDAARGLLERAEAVTADAEAGEVETLEAELRCLERRAP---HSRRRAPSTAAHHR------RRSASPPG------------LPLPAGRGLRSAVDPSFSWPQPRSPSTDGLRVSSVGGEDFRYSGSRRLWAV--RGAGGARHGQGDLDVGSDGGGRGA------------XXXXXXXXXXXXXXXAEMEEALLDVETFVLRQGIARAVDVRRREA-AESRQEVSAAAEEXXXXXXXXXXXRAREARWEAERSSLEA--RLANLEEXGASVRREADEQAAEVEALKIQRENLVRRVASAEAEAALARAVAE----RSSASSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSALTAVADAVPSD--HHAAALLAAT--------------LAGARSDLGXXXXXXXXXXXXXXXXXX--RLSE----EEGHRQELERQFRVE----------------------------------------------------RERRES-----------------------------------------------EAVSGARXXXXXXXXGRDEAEGRLDVAQRTVTALEQKSGGXXXXXXXXXEEAAAARRALALAERERERLQGQRRGLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVRARRGEESARELDDRLQLESRRRQSVDRALHDAEAKLRELNRRDETTAAPVDDLRRLATTAAAEENDAVVVELRGQVSRARERAEILEERLDETARVNRRLEREVAEAVELGARAEAELGAALAGERLRRDGELTEIKSVVDEMMTLDPSASGGGVAGISGDLFSPPRGGQRGGGLVVDRRSSGRGSGGAGHSGNLGYYNTSSRTLRAEERSANDTAAFPYPGVVVEPGWRSALTTTTNDGAVAAATARLAEAWSLLESSEAARRRLSEEVKAWAIRTAGLEEALAAAEATAEARAREARLLAAGLQDARDGLAVEEEARREAEGRADALRNMLQAGXXXXXXXXXXXXXXXX--DVARNLAGQVKALRSRVEELLERARDAEVREVLEKRGRKAAQRALREL 4364
BLAST of mRNA_H-paniculata_contig243.6587.1 vs. uniprot
Match: A0A6H5JP43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP43_9PHAE) HSP 1 Score: 275 bits (704), Expect = 3.370e-73 Identity = 201/334 (60.18%), Postives = 226/334 (67.66%), Query Frame = 1
Query: 9793 VLELRREVSRVTARAKVLGQRLDETVKRNRWLEKEVAQAVKLGARAEAELGAALAGERMQRDGELTEIKCVVDEMMTLDASASGGGIAGRGRDLFSPPR----------------RGAGGSRRS------QAISHQPRSSSEAQHDT--------------------TLNFMDVGAA-ARLTEAWSLLEASEAARRKLQGEVKSWADRAAKLEGALAAAEAAVEEGAREARLLAASLQDAREGLAAEEGARREAEGRAEALRVMLQAGDWGASGGGASPARGGGGGDVARGLEGQVKALRSRVEELLERAREAEVREVLEKRGRKAAQHALSEL 10665
V+ELR +VSR RA++L +RLDET + NR LE+EVA+AV++GARAEAELGAALAGER++RDGELTEIK VVDEMMTLD SASGGG+AG DLFSPPR RG+GG+ S S R+ + +DT T N V AA ARL EAWSLLE+SEAARR+L EVK+WA R A LE ALAAAEA E AREARLLAASLQDAR+GLA EE ARREAEGRA+ALR M+QAG G DVAR L GQVKALRSRVEELLERAR+AEVREVLEKRGRKAAQ AL EL
Sbjct: 386 VVELRGQVSRARERAEILEERLDETARVNRRLEREVAEAVEIGARAEAELGAALAGERLRRDGELTEIKSVVDEMMTLDPSASGGGVAGISGDLFSPPRGGQRGGGLVVDRRSSGRGSGGAGHSGNRGYYNTSSRTLRTEEGSANDTAALPYPGVVVEPGWSSALTTTTNDGGVAAATARLAEAWSLLESSEAARRRLSEEVKAWAIRTAGLEEALAAAEATAEARAREARLLAASLQDARDGLAVEEEARREAEGRADALRNMIQAG--GXXXXXXXXXXXXXXXDVARNLAGQVKALRSRVEELLERARDAEVREVLEKRGRKAAQRALREL 717
BLAST of mRNA_H-paniculata_contig243.6587.1 vs. uniprot
Match: A0A6H5JDN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDN1_9PHAE) HSP 1 Score: 102 bits (255), Expect = 1.170e-17 Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 1
Query: 1 GRAAFLRERELREATELRYVQTRAALDEQLELDAEALERMDQLTLQAREEHSVTERERARLEGCVIQLERGKRATEGVLRATQEDLEE 264
GR A L+ERELREA E + Q RAA+DEQLELDA+ALERMD LT QAR+E T RE+ RL+GCVI+LERGKR TE L QE+LEE
Sbjct: 31 GREALLQERELREAAESLHAQLRAAMDEQLELDAKALERMDGLTRQARKEQEETTREKDRLQGCVIELERGKRETEDALSVAQEELEE 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig243.6587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig243.6587.1 >prot_H-paniculata_contig243.6587.1 ID=prot_H-paniculata_contig243.6587.1|Name=mRNA_H-paniculata_contig243.6587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=3624bp MDQLTLQAREEHSVTERERARLEGCVIQLERGKRATEGVLRATQEDLEEAback to top mRNA from alignment at H-paniculata_contig243:133..43655- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig243.6587.1 ID=mRNA_H-paniculata_contig243.6587.1|Name=mRNA_H-paniculata_contig243.6587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=43523bp|location=Sequence derived from alignment at H-paniculata_contig243:133..43655- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig243:133..43655- >mRNA_H-paniculata_contig243.6587.1 ID=mRNA_H-paniculata_contig243.6587.1|Name=mRNA_H-paniculata_contig243.6587.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=21744bp|location=Sequence derived from alignment at H-paniculata_contig243:133..43655- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |