mRNA_H-paniculata_contig24278.6578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24278.6578.1
Unique NamemRNA_H-paniculata_contig24278.6578.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24278.6578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24278contigH-paniculata_contig24278:3130..3545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue7.3e-15
Seed eggNOG ortholog2880.D7FU35
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size417
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.1633668-CDS-H-paniculata_contig24278:3129..35431622929700.1633668-CDS-H-paniculata_contig24278:3129..3543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 3130..3543 +
1691480972.3958595-CDS-H-paniculata_contig24278:3129..35431691480972.3958595-CDS-H-paniculata_contig24278:3129..3543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 3130..3543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24278.6578.1prot_H-paniculata_contig24278.6578.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24278 3130..3543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24278.6578.1

>prot_H-paniculata_contig24278.6578.1 ID=prot_H-paniculata_contig24278.6578.1|Name=mRNA_H-paniculata_contig24278.6578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
VLLPPRQDESLVLTAEEREERNWTERMKTWYSKGKKTGKGRTTKKFRLFF
LCAHDHSLAECGLEGKGYRIEILRKWAKTCVPFAKALLVVVNIALKSFAG
LSIPIEEIAGVDDKSWGKAVSSMVEDAAEASIGEANSR
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mRNA from alignment at H-paniculata_contig24278:3130..3545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24278.6578.1 ID=mRNA_H-paniculata_contig24278.6578.1|Name=mRNA_H-paniculata_contig24278.6578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=416bp|location=Sequence derived from alignment at H-paniculata_contig24278:3130..3545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCTTGCCCCCGCGGCAAGACGAGTCTCTAGTACTGACAGCGGAAGA
AAGAGAGGAACGAAACTGGACGGAGAGGATGAAAACGTGGTATAGTAAGG
GCAAGAAGACCGGGAAAGGCAGGACAACGAAGAAGTTTAGACTGTTCTTT
CTCTGTGCACATGACCACAGCCTTGCAGAATGTGGGCTTGAAGGAAAGGG
GTACCGGATAGAGATTCTGCGAAAGTGGGCGAAAACGTGTGTCCCGTTCG
CCAAAGCCCTACTGGTCGTTGTGAACATCGCGCTGAAGAGCTTTGCAGGG
TTGAGCATTCCCATTGAAGAGATCGCAGGTGTTGATGATAAATCGTGGGG
CAAAGCCGTCTCATCGATGGTGGAGGATGCGGCAGAGGCTTCGATAGGCG
AAGCTAACTCTAGGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig24278:3130..3545+

>mRNA_H-paniculata_contig24278.6578.1 ID=mRNA_H-paniculata_contig24278.6578.1|Name=mRNA_H-paniculata_contig24278.6578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig24278:3130..3545+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCTCTTGCCCCCGCGGCAAGACGAGTCTCTAGTACTGACAGCGGAAGA
AAGAGAGGAACGAAACTGGACGGAGAGGATGAAAACGTGGTATAGTAAGG
GCAAGAAGACCGGGAAAGGCAGGACAACGAAGAAGTTTAGACTGTTCTTT
CTCTGTGCACATGACCACAGCCTTGCAGAATGTGGGCTTGAAGGAAAGGG
GTACCGGATAGAGATTCTGCGAAAGTGGGCGAAAACGTGTGTCCCGTTCG
CCAAAGCCCTACTGGTCGTTGTGAACATCGCGCTGAAGAGCTTTGCAGGG
TTGAGCATTCCCATTGAAGAGATCGCAGGTGTTGATGATAAATCGTGGGG
CAAAGCCGTCTCATCGATGGTGGAGGATGCGGCAGAGGCTTCGATAGGCG
AAGCTAACTCTAGGGTGCTCTTGCCCCCGCGGCAAGACGAGTCTCTAGTA
CTGACAGCGGAAGAAAGAGAGGAACGAAACTGGACGGAGAGGATGAAAAC
GTGGTATAGTAAGGGCAAGAAGACCGGGAAAGGCAGGACAACGAAGAAGT
TTAGACTGTTCTTTCTCTGTGCACATGACCACAGCCTTGCAGAATGTGGG
CTTGAAGGAAAGGGGTACCGGATAGAGATTCTGCGAAAGTGGGCGAAAAC
GTGTGTCCCGTTCGCCAAAGCCCTACTGGTCGTTGTGAACATCGCGCTGA
AGAGCTTTGCAGGGTTGAGCATTCCCATTGAAGAGATCGCAGGTGTTGAT
GATAAATCGTGGGGCAAAGCCGTCTCATCGATGGTGGAGGATGCGGCAGA
GGCTTCGATAGGCGAAGCTAACTCTAGG
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