mRNA_H-paniculata_contig24278.6577.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24278.6577.1
Unique NamemRNA_H-paniculata_contig24278.6577.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24278.6577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24278contigH-paniculata_contig24278:1147..2856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size262
Cds size261
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24278.6577.1prot_H-paniculata_contig24278.6577.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24278 1147..2856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929700.0811565-CDS-H-paniculata_contig24278:1146..12641622929700.0811565-CDS-H-paniculata_contig24278:1146..1264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 1147..1264 +
1691480972.361779-CDS-H-paniculata_contig24278:1146..12641691480972.361779-CDS-H-paniculata_contig24278:1146..1264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 1147..1264 +
1622929700.0980282-CDS-H-paniculata_contig24278:2314..24121622929700.0980282-CDS-H-paniculata_contig24278:2314..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 2315..2412 +
1691480972.373158-CDS-H-paniculata_contig24278:2314..24121691480972.373158-CDS-H-paniculata_contig24278:2314..2412Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 2315..2412 +
1622929700.1161382-CDS-H-paniculata_contig24278:2811..28561622929700.1161382-CDS-H-paniculata_contig24278:2811..2856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 2812..2856 +
1691480972.3841808-CDS-H-paniculata_contig24278:2811..28561691480972.3841808-CDS-H-paniculata_contig24278:2811..2856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24278 2812..2856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24278.6577.1

>prot_H-paniculata_contig24278.6577.1 ID=prot_H-paniculata_contig24278.6577.1|Name=mRNA_H-paniculata_contig24278.6577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
RGDRLIDKRNICTTCRIAGKGAGILASELLEVVDINAPIDQVLQQVVDGV
SESQRARLNSCGNASSTNSRAAVHSHADSEVLEQIWR
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mRNA from alignment at H-paniculata_contig24278:1147..2856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24278.6577.1 ID=mRNA_H-paniculata_contig24278.6577.1|Name=mRNA_H-paniculata_contig24278.6577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1710bp|location=Sequence derived from alignment at H-paniculata_contig24278:1147..2856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGTGATCGCTTGATAGACAAGAGAAACATCTGTACAACTTGCCGCAT
AGCGGGCAAGGGAGCTGGGATTCTTGCATCAGAGCTACTTGAGGTGGTCG
ACATCAACGCCCCTATAGGTAACACCCTCATAGTCAACATGTGTTCCAGC
CAAAATCACAATAATTTAGTCCTTGTTAGTTGAGCGGAGCTGTAGCCAGC
ATAACCGCGTTGACTTGGTTCTCATGTCGCTGACTCGTCCGTTATAAAAT
CAGGTAGGACTACGTGGATAGTGTCCCGATTGGAGAATTTTGGAACTGGT
GAACGATCTACGCTCTAGCCTACGACAATACGTGTTTCGCTGCCGGATGT
GGGCAGGGGGCGTTGCATGACATGTAATCGGTAAAGTGGGCAGACCTGTG
CTCCTGACTGTGTGAAGTTGAAGGCAGCTTGTGAAAGGCGGGCTGAGAGA
AAGAGTCTTGTATTATTACTGATGAACCGTTCCCCGTTATTGTATACAGA
AAGGAAATGGGAAGGAGCTGGGAGAGAGCTGAGCTTGTAACAGTGTGGAA
TGTAGTGACGAGTGGAAAGGAAGGGCTCCGAGTAGCATATAAAAGAAGCC
TGGTTGTTGTCAATTGTAGCTACATCATATCTATATGCATAATGTCCTAG
TTGGATGTAGGCACGAGATGGAAGACTACGACGACGACGACGAGGACGAC
TGAACACATGGGGGCTTGTCTACTCAACCACCCGGGGACACATGAAACCA
TAACTCCGGTCCTGGACAATCCCGAATACCTATCGTACCCCCCTCTATAC
CCGCATCATCCATCTTATATCATCGGAATAATACACATGAAATATCCGTA
GAGTCGTTGGCAGTTACAACGATCAGTACATGTACGAGTAAACCAGTCAA
CATGCACATTGCACAATGCTCGGCTGTTGGCGTAGTCAGCTGCCATCTGA
TGAGCAGCGTGAAGGCGCACGCTGCATATACTGTAGAGCATTTGTTTTCG
CTGGGGGTGCCGTTTATTTACCCGATAGATGAAACTCTTCTCAATGTAAC
ACCAGCGAATGGTCGCTACGTCAGTTGGAAACTGCCGTCTTTCACAGCAC
TTCGACGCCCATACCTTTCCGTCAACAAGGACACATGTCACGGATGTCTT
CCATTTTCGCGCGTCCAGATCAAGTACTTCAGCAAGTGGTGGACGGTGTC
TCCGAGTCGCAGAGAGCGCGCCTCAACAGCTGCGGGAATGCCAGCAGCAC
AAATTCTCGAGCGGCGGTGAGGAGGTCTCGTACCCAGGTTCTTATATATG
TGTATTTGATATGCTTCTTCGAGTGTGGCTGCAAAAGCACGACGAAACCA
TTTGCTGTGGTTGTTAGTACCCCGCCCGCGATGTCGCCTTGGTGGTGAGG
AGACCATCAAACTCTCTTACAAGCCTTTGAAACAAGCGTAGCTCGTTTAC
CTAATGAAGGGGCTACCTAATGAAGGCGGGTTCAAACTATCATGCTCACC
ACAATGTTGTACATTCACCAGATTGAACACGCTTGGTGTGCCCGCTCAGC
ATGGTTCAAACAACTCCTGAAAAAACAAGTGTCCGGCTTCGTTGCTTGAC
TTGGTCGTTCACCCCTCAAGTCGTCTTGTCTGACGTCAGTACTCTCTCGT
TCCTGATTATGACAGGTCCACAGTCATGCAGATAGTGAGGTGTTGGAGCA
GATCTGGAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24278:1147..2856+

>mRNA_H-paniculata_contig24278.6577.1 ID=mRNA_H-paniculata_contig24278.6577.1|Name=mRNA_H-paniculata_contig24278.6577.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig24278:1147..2856+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGTGATCGCTTGATAGACAAGAGAAACATCTGTACAACTTGCCGCAT
AGCGGGCAAGGGAGCTGGGATTCTTGCATCAGAGCTACTTGAGGTGGTCG
ACATCAACGCCCCTATAGAGGGGTGATCGCTTGATAGACAAGAGAAACAT
CTGTACAACTTGCCGCATAGCGGGCAAGGGAGCTGGGATTCTTGCATCAG
AGCTACTTGAGGTGGTCGACATCAACGCCCCTATAGATCAAGTACTTCAG
CAAGTGGTGGACGGTGTCTCCGAGTCGCAGAGAGCGCGCCTCAACAGCTG
CGGGAATGCCAGCAGCACAAATTCTCGAGCGGCGATCAAGTACTTCAGCA
AGTGGTGGACGGTGTCTCCGAGTCGCAGAGAGCGCGCCTCAACAGCTGCG
GGAATGCCAGCAGCACAAATTCTCGAGCGGCGGTCCACAGTCATGCAGAT
AGTGAGGTGTTGGAGCAGATCTGGAGGGTCCACAGTCATGCAGATAGTGA
GGTGTTGGAGCAGATCTGGAGG
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