prot_H-paniculata_contig24267.6573.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig24267.6573.1
Unique Nameprot_H-paniculata_contig24267.6573.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length220
Homology
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: H3H7T3_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7T3_PHYRM)

HSP 1 Score: 137 bits (344), Expect = 6.650e-34
Identity = 87/227 (38.33%), Postives = 123/227 (54.19%), Query Frame = 0
Query:    1 PPGRKAICTKWIFKQKLKENSSVARYKARLVAQGFSLVEGGDFFETSASVARMSTTCKRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQ------YTEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR--------EGILLALKYVQTGGQLADILTKELSRVKFQR 213
            P  +K I  KW+F+ K   +  + ++KARLVA+GF+   G D+ ET A                   PDLG  F   +    L G+ DANWA D++ R+STTG VF LN   I+W S++Q       TEAEY+A   A +EAV+LR+LL  +G  C G+TT+F+DN+  I L+K    H RT HI ++        E  ++ L+Y  T    AD  TK L+R K ++
Sbjct:  361 PSDKKTIGCKWVFRIKRDPSGKIIKFKARLVAKGFTQRPGVDYTETFA-------------------PDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMSADRFTKALARPKHRQ 567          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A5D3DJY4_CUCME (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DJY4_CUCME)

HSP 1 Score: 135 bits (340), Expect = 9.660e-34
Identity = 98/251 (39.04%), Postives = 124/251 (49.40%), Query Frame = 0
Query:    1 PPGRKAICTKWIFKQKLKENSSVARYKARLVAQGFSLVEGGDFFETSASVARMST-------------------TCKRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQ------YTEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR----EGILLA----LKYVQTGGQLADILTKELSRVKFQRLRNLL 218
            P G+KA   KW+FK K  E   V RYKARLVA+G+S  +G D+ E  A VA + T                     KR  RY+    D G  F   S    LEG+ D++WA D  DRKST+G  F + +    W S+KQ        EAEY+AA      AV+LR LL ++G     ST +  DNKS I L+K    H R+ HI  R     G +L     ++YV+T  Q ADI TK L    F  LR LL
Sbjct:  233 PNGKKAAGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFALVACLETISVGFVSRFMESPTTTHLKVAKRILRYLKGTLDYGL-FYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYAFFIGNIAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQDDSTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRGCILRKEVQVEYVKTEDQTADIFTKPLKVNMFNNLRTLL 482          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 125 bits (313), Expect = 1.230e-31
Identity = 78/174 (44.83%), Postives = 102/174 (58.62%), Query Frame = 0
Query:   58 KRYFRYISTVPDLGT--TFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQYT------EAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIREGIL--------LALKYVQTGGQLADILTKELSRVKFQRLR 215
            KR  RY+    DLG   TF D+     + GF D+++A DV+ RKSTTG VF + +G I WCSR+Q T      EAEY+AA EA KEA++LR LL  I      +  L+ DN+SAI L K    H RT HI +R   +        + ++YV++  QLADILTK L  VKF +LR
Sbjct:   78 KRIMRYLKHTKDLGIRYTFSDEP----VHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI)

HSP 1 Score: 129 bits (325), Expect = 6.610e-31
Identity = 77/172 (44.77%), Postives = 100/172 (58.14%), Query Frame = 0
Query:   58 KRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR--------EGILLALKYVQTGGQLADILTKELSRVKFQRLR 215
            KR F Y+    DLG  +    +   L GF DA++A D+E R+STTG +F L SG + W SR+Q       TEAEYIAA  A KEAV+LR LL  +G+ C   T L+ DN+SAI ++K    H RT HI +R        E   + + YV +  Q ADILTK LS+  F+RLR
Sbjct: 1433 KRIFAYLVGTADLGIEYRSSGSESKLVGFSDADYAGDLETRRSTTGYLFSLASGPVTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAKNPEFHERTKHIDVRYHHIRKMVENAAIQVLYVPSEMQKADILTKALSKESFRRLR 1604          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT)

HSP 1 Score: 127 bits (320), Expect = 1.090e-30
Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 0
Query:   58 KRYFRYISTVPDLGTTF----GDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR-----EGIL---LALKYVQTGGQLADILTKELSRVKFQRLRNLL 218
            KR  RYI    + G  F     D  N   L G+ DANWA DV+ R+ST+G VFK+ + T++WCS+KQ       TEAEY+A  +A +EA+++R LL  IG      TT++EDN+ AI +SK    H RT HI +R     E +L   + + Y  T   LADI+TK L++  FQRLR++L
Sbjct:  352 KRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 530          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 128 bits (321), Expect = 2.220e-30
Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 0
Query:   58 KRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIG-----IREGI---LLALKYVQTGGQLADILTKELSRVKFQRLRNLL 218
            KR  RY+      G TF    N   L G+ DA+W  DVE R+ST+G VF++ + TI+WCS++Q       TEAEYIA   A +EAV+LR LL  IG      +T+FEDN+ AI LSK    H RT HI      IRE +   ++ +KY +T   LAD++TK L +V F+R R+++
Sbjct: 1154 KRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT)

HSP 1 Score: 127 bits (318), Expect = 5.550e-30
Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 0
Query:   58 KRYFRYISTVPDLGTTF----GDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR-----EGIL---LALKYVQTGGQLADILTKELSRVKFQRLRNLL 218
            KR  RYI    + G  F     D  N   L G+ DANWA DV+ R+ST+G VFK+ + T++WCS+KQ       TEAEY+A  +A +EA+++R LL  IG      TT++EDN+ AI +SK    H RT HI +R     E +L   + + Y  T   LADI+TK L++  FQRLR++L
Sbjct: 1097 KRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRGLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 1275          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT)

HSP 1 Score: 126 bits (316), Expect = 9.640e-30
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 0
Query:   58 KRYFRYISTVPDLGTTF----GDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR-----EGIL---LALKYVQTGGQLADILTKELSRVKFQRLRNLL 218
            KR  RYI    + G  F     D  N   L G+ DANWA DV+ R+ST+G VFK+ + T++WCS+KQ       TEAEY+A  +A +EA+++R LL  IG      TT++EDN+ AI  SK    H RT HI +R     E +L   + + Y  T   LADI+TK L++  FQRLR++L
Sbjct:  700 KRLLRYIKGTLNFGLKFTTSENDDENGDKLYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIESSKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 878          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A1M2V968_TRAPU (Copia protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V968_TRAPU)

HSP 1 Score: 119 bits (297), Expect = 3.720e-29
Identity = 74/183 (40.44%), Postives = 96/183 (52.46%), Query Frame = 0
Query:   55 TTCKRYFRYISTVPDLGTTFGDKSNCHG--------LEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR--------EGILLALKYVQTGGQLADILTKELSRVKFQRLR 215
            T  KR FRY+    D G T+G K   H         LEG+ DA+W  +  DRKS +G  F + SG I W S+KQ       TEAEY+A   A + A+++R LL  + F    +T L  DN+SAI LSK    H R+ HI IR        E   +AL YV T   +AD+ TK L+R +F  LR
Sbjct:   62 TAVKRVFRYLKGTLDYGMTYGRKGETHARAYYRNLRLEGYSDADWGANPVDRKSISGYAFLIGSGVIAWSSKKQAVVALSSTEAEYMAISYAARHAIWMRTLLAELTFAQEQATKLNADNQSAIALSKDSVHHARSKHIDIRHHFIRECIESDTIALAYVPTDDNVADLFTKALARERFHMLR 244          
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 119 bits (297), Expect = 9.480e-29
Identity = 71/175 (40.57%), Postives = 99/175 (56.57%), Query Frame = 0
Query:   58 KRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQ------YTEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGI-----REGI---LLALKYVQTGGQLADILTKELSRVKFQRLRNLL 218
            KR  RYI    + G  F  KS    L G+ DA+WA D++ R+ST+G VF++N  T++WCS++Q       TEAEY+A   A +E V+LR LL  IG      + + EDN+ AI LSK    H RT HI +     RE +    + + Y  T   LAD++TK L R  FQ+ R++L
Sbjct:  127 KRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H3H7T3_PHYRM6.650e-3438.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A5D3DJY4_CUCME9.660e-3439.04Retrovirus-related pol polyprotein from transposon... [more]
A0A1Y1N3K4_PHOPY1.230e-3144.83Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A0J7KRG1_LASNI6.610e-3144.77Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A7D9JFU5_PARCT1.090e-3043.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT2.220e-3043.43Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9DPP1_PARCT5.550e-3043.02Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7H8C9_PARCT9.640e-3043.02Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A1M2V968_TRAPU3.720e-2940.44Copia protein n=1 Tax=Trametes pubescens TaxID=154... [more]
A0A7D9D5L2_PARCT9.480e-2940.57Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..55
e-value: 1.9E-11
score: 44.1
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 57..211
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 57..211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24267contigH-paniculata_contig24267:1017..2473 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24267.6573.1mRNA_H-paniculata_contig24267.6573.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig24267 1017..2473 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig24267.6573.1 ID=prot_H-paniculata_contig24267.6573.1|Name=mRNA_H-paniculata_contig24267.6573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp
PPGRKAICTKWIFKQKLKENSSVARYKARLVAQGFSLVEGGDFFETSASV
ARMSTTCKRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKS
TTGCVFKLNSGTINWCSRKQYTEAEYIAAGEAGKEAVYLRELLGSIGFGC
RGSTTLFEDNKSAINLSKAYGAHCRTNHIGIREGILLALKYVQTGGQLAD
ILTKELSRVKFQRLRNLLM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like