mRNA_H-paniculata_contig24267.6573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: H3H7T3_PHYRM (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7T3_PHYRM) HSP 1 Score: 137 bits (344), Expect = 6.650e-34 Identity = 87/227 (38.33%), Postives = 123/227 (54.19%), Query Frame = 1
Query: 1 PPGRKAICTKWIFKQKLKENSSVARYKARLVAQGFSLVEGGDFFETSASVARMSTTCKRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQ------YTEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR--------EGILLALKYVQTGGQLADILTKELSRVKFQR 639
P +K I KW+F+ K + + ++KARLVA+GF+ G D+ ET A PDLG F + L G+ DANWA D++ R+STTG VF LN I+W S++Q TEAEY+A A +EAV+LR+LL +G C G+TT+F+DN+ I L+K H RT HI ++ E ++ L+Y T AD TK L+R K ++
Sbjct: 361 PSDKKTIGCKWVFRIKRDPSGKIIKFKARLVAKGFTQRPGVDYTETFA-------------------PDLGLVFNGGTKGE-LIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMSADRFTKALARPKHRQ 567
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A5D3DJY4_CUCME (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DJY4_CUCME) HSP 1 Score: 135 bits (340), Expect = 9.660e-34 Identity = 98/251 (39.04%), Postives = 124/251 (49.40%), Query Frame = 1
Query: 1 PPGRKAICTKWIFKQKLKENSSVARYKARLVAQGFSLVEGGDFFETSASVARMST-------------------TCKRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQ------YTEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR----EGILLA----LKYVQTGGQLADILTKELSRVKFQRLRNLL 654
P G+KA KW+FK K E V RYKARLVA+G+S +G D+ E A VA + T KR RY+ D G F S LEG+ D++WA D DRKST+G F + + W S+KQ EAEY+AA AV+LR LL ++G ST + DNKS I L+K H R+ HI R G +L ++YV+T Q ADI TK L F LR LL
Sbjct: 233 PNGKKAAGVKWVFKIKRNEKGEVERYKARLVAKGYSQRKGIDYDEVFALVACLETISVGFVSRFMESPTTTHLKVAKRILRYLKGTLDYGL-FYSSSKEFKLEGYCDSDWAGDTNDRKSTSGYAFFIGNIAFTWSSKKQPIVTLSTCEAEYVAAASCVCHAVWLRNLLKTVGILQDDSTVIHVDNKSTIALAKNPVFHDRSKHIDTRFHFIRGCILRKEVQVEYVKTEDQTADIFTKPLKVNMFNNLRTLL 482
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY) HSP 1 Score: 125 bits (313), Expect = 1.230e-31 Identity = 78/174 (44.83%), Postives = 102/174 (58.62%), Query Frame = 1
Query: 172 KRYFRYISTVPDLGT--TFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQYT------EAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIREGIL--------LALKYVQTGGQLADILTKELSRVKFQRLR 645
KR RY+ DLG TF D+ + GF D+++A DV+ RKSTTG VF + +G I WCSR+Q T EAEY+AA EA KEA++LR LL I + L+ DN+SAI L K H RT HI +R + + ++YV++ QLADILTK L VKF +LR
Sbjct: 78 KRIMRYLKHTKDLGIRYTFSDEP----VHGFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNGDIKIEYVRSEDQLADILTKPLVSVKFNKLR 247
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A0J7KRG1_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KRG1_LASNI) HSP 1 Score: 129 bits (325), Expect = 6.610e-31 Identity = 77/172 (44.77%), Postives = 100/172 (58.14%), Query Frame = 1
Query: 172 KRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR--------EGILLALKYVQTGGQLADILTKELSRVKFQRLR 645
KR F Y+ DLG + + L GF DA++A D+E R+STTG +F L SG + W SR+Q TEAEYIAA A KEAV+LR LL +G+ C T L+ DN+SAI ++K H RT HI +R E + + YV + Q ADILTK LS+ F+RLR
Sbjct: 1433 KRIFAYLVGTADLGIEYRSSGSESKLVGFSDADYAGDLETRRSTTGYLFSLASGPVTWSSRRQKIVTLSTTEAEYIAASSAAKEAVWLRNLLDEVGYRCDSPTVLYVDNQSAIKIAKNPEFHERTKHIDVRYHHIRKMVENAAIQVLYVPSEMQKADILTKALSKESFRRLR 1604
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A7D9JFU5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFU5_PARCT) HSP 1 Score: 127 bits (320), Expect = 1.090e-30 Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 172 KRYFRYISTVPDLGTTF----GDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR-----EGIL---LALKYVQTGGQLADILTKELSRVKFQRLRNLL 654
KR RYI + G F D N L G+ DANWA DV+ R+ST+G VFK+ + T++WCS+KQ TEAEY+A +A +EA+++R LL IG TT++EDN+ AI +SK H RT HI +R E +L + + Y T LADI+TK L++ FQRLR++L
Sbjct: 352 KRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 530
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT) HSP 1 Score: 128 bits (321), Expect = 2.220e-30 Identity = 76/175 (43.43%), Postives = 104/175 (59.43%), Query Frame = 1
Query: 172 KRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIG-----IREGI---LLALKYVQTGGQLADILTKELSRVKFQRLRNLL 654
KR RY+ G TF N L G+ DA+W DVE R+ST+G VF++ + TI+WCS++Q TEAEYIA A +EAV+LR LL IG +T+FEDN+ AI LSK H RT HI IRE + ++ +KY +T LAD++TK L +V F+R R+++
Sbjct: 1154 KRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPSTIFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSFERFRDMM 1328
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A7D9DPP1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DPP1_PARCT) HSP 1 Score: 127 bits (318), Expect = 5.550e-30 Identity = 77/179 (43.02%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 172 KRYFRYISTVPDLGTTF----GDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR-----EGIL---LALKYVQTGGQLADILTKELSRVKFQRLRNLL 654
KR RYI + G F D N L G+ DANWA DV+ R+ST+G VFK+ + T++WCS+KQ TEAEY+A +A +EA+++R LL IG TT++EDN+ AI +SK H RT HI +R E +L + + Y T LADI+TK L++ FQRLR++L
Sbjct: 1097 KRLLRYIKGTLNFGLKFTTSENDDENGDELYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRGLLSDIGCKSEEPTTMYEDNQGAIEISKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 1275
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A6S7H8C9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H8C9_PARCT) HSP 1 Score: 126 bits (316), Expect = 9.640e-30 Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1
Query: 172 KRYFRYISTVPDLGTTF----GDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR-----EGIL---LALKYVQTGGQLADILTKELSRVKFQRLRNLL 654
KR RYI + G F D N L G+ DANWA DV+ R+ST+G VFK+ + T++WCS+KQ TEAEY+A +A +EA+++R LL IG TT++EDN+ AI SK H RT HI +R E +L + + Y T LADI+TK L++ FQRLR++L
Sbjct: 700 KRLLRYIKGTLNFGLKFTTSENDDENGDKLYGYSDANWAGDVDSRRSTSGYVFKVANSTVSWCSKKQASVTKSTTEAEYVALSQATQEAIWMRRLLSDIGCKSEEPTTMYEDNQGAIESSKNARFHNRTKHIDVRFHFVREKVLSNEVKVIYCPTEHMLADIMTKGLTKKIFQRLRSML 878
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A1M2V968_TRAPU (Copia protein n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V968_TRAPU) HSP 1 Score: 119 bits (297), Expect = 3.720e-29 Identity = 74/183 (40.44%), Postives = 96/183 (52.46%), Query Frame = 1
Query: 163 TTCKRYFRYISTVPDLGTTFGDKSNCHG--------LEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQY------TEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGIR--------EGILLALKYVQTGGQLADILTKELSRVKFQRLR 645
T KR FRY+ D G T+G K H LEG+ DA+W + DRKS +G F + SG I W S+KQ TEAEY+A A + A+++R LL + F +T L DN+SAI LSK H R+ HI IR E +AL YV T +AD+ TK L+R +F LR
Sbjct: 62 TAVKRVFRYLKGTLDYGMTYGRKGETHARAYYRNLRLEGYSDADWGANPVDRKSISGYAFLIGSGVIAWSSKKQAVVALSSTEAEYMAISYAARHAIWMRTLLAELTFAQEQATKLNADNQSAIALSKDSVHHARSKHIDIRHHFIRECIESDTIALAYVPTDDNVADLFTKALARERFHMLR 244
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 119 bits (297), Expect = 9.480e-29 Identity = 71/175 (40.57%), Postives = 99/175 (56.57%), Query Frame = 1
Query: 172 KRYFRYISTVPDLGTTFGDKSNCHGLEGFVDANWAEDVEDRKSTTGCVFKLNSGTINWCSRKQ------YTEAEYIAAGEAGKEAVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKAYGAHCRTNHIGI-----REGI---LLALKYVQTGGQLADILTKELSRVKFQRLRNLL 654
KR RYI + G F KS L G+ DA+WA D++ R+ST+G VF++N T++WCS++Q TEAEY+A A +E V+LR LL IG + + EDN+ AI LSK H RT HI + RE + + + Y T LAD++TK L R FQ+ R++L
Sbjct: 127 KRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24267.6573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24267.6573.1 >prot_H-paniculata_contig24267.6573.1 ID=prot_H-paniculata_contig24267.6573.1|Name=mRNA_H-paniculata_contig24267.6573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=220bp PPGRKAICTKWIFKQKLKENSSVARYKARLVAQGFSLVEGGDFFETSASVback to top mRNA from alignment at H-paniculata_contig24267:1017..2473- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24267.6573.1 ID=mRNA_H-paniculata_contig24267.6573.1|Name=mRNA_H-paniculata_contig24267.6573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1457bp|location=Sequence derived from alignment at H-paniculata_contig24267:1017..2473- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24267:1017..2473- >mRNA_H-paniculata_contig24267.6573.1 ID=mRNA_H-paniculata_contig24267.6573.1|Name=mRNA_H-paniculata_contig24267.6573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig24267:1017..2473- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |