mRNA_H-paniculata_contig2426.6572.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2426.6572.1
Unique NamemRNA_H-paniculata_contig2426.6572.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2426.6572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2426contigH-paniculata_contig2426:1490..7904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size696
Cds size639
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2426.6572.1prot_H-paniculata_contig2426.6572.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2426 1547..7904 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.6131663-UTR-H-paniculata_contig2426:1489..15461622929699.6131663-UTR-H-paniculata_contig2426:1489..1546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2426 1490..1546 +
1691480972.1949413-UTR-H-paniculata_contig2426:1489..15461691480972.1949413-UTR-H-paniculata_contig2426:1489..1546Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2426 1490..1546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.6261866-CDS-H-paniculata_contig2426:1546..18131622929699.6261866-CDS-H-paniculata_contig2426:1546..1813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2426 1547..1813 +
1691480972.2032828-CDS-H-paniculata_contig2426:1546..18131691480972.2032828-CDS-H-paniculata_contig2426:1546..1813Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2426 1547..1813 +
1622929699.6389368-CDS-H-paniculata_contig2426:6712..68161622929699.6389368-CDS-H-paniculata_contig2426:6712..6816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2426 6713..6816 +
1691480972.2139692-CDS-H-paniculata_contig2426:6712..68161691480972.2139692-CDS-H-paniculata_contig2426:6712..6816Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2426 6713..6816 +
1622929699.6515062-CDS-H-paniculata_contig2426:7636..79041622929699.6515062-CDS-H-paniculata_contig2426:7636..7904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2426 7637..7904 +
1691480972.2241225-CDS-H-paniculata_contig2426:7636..79041691480972.2241225-CDS-H-paniculata_contig2426:7636..7904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2426 7637..7904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2426.6572.1

>prot_H-paniculata_contig2426.6572.1 ID=prot_H-paniculata_contig2426.6572.1|Name=mRNA_H-paniculata_contig2426.6572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=213bp
MSGDPFLPQDGMMHMGDSVLGEESTGDLMHMDIAADDNANISPRAHHPHH
HPTGNLEQGQLDAAAPGDHGALSGEFAFDIQGDVGGELQEDEDLLNYFLS
GDGLESGGLGSASPPRTGSLMDGSSARRGDPTGGSFDALASVHGVWGSSP
NTHSSLSMSPPLGLSELLRSPVPKSEIDMEVTSHTAIPHTTLNSADVGLG
GMNIVASTGGDEG
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mRNA from alignment at H-paniculata_contig2426:1490..7904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2426.6572.1 ID=mRNA_H-paniculata_contig2426.6572.1|Name=mRNA_H-paniculata_contig2426.6572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6415bp|location=Sequence derived from alignment at H-paniculata_contig2426:1490..7904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGTTCGAGTTGCAGTTCAGACTAGGTCATCATTGTGTGAATTGTTCG
ACCGCGCATGTCAGGAGACCCGTTTCTGCCCCAGGATGGGATGATGCATA
TGGGAGACAGCGTTTTGGGGGAAGAAAGCACAGGGGATCTAATGCACATG
GATATAGCAGCCGATGACAATGCTAACATTTCACCTAGAGCACACCACCC
TCACCATCATCCCACTGGTAATCTCGAGCAGGGGCAGTTGGATGCTGCCG
CACCTGGCGACCACGGGGCGCTAAGCGGAGAGTTTGCCTTCGATATTCAA
GGCGACGTTGGGGGAGAACTGCAGGTACGTTTCATGTGGTTTCTTTCTGA
CACATTGGCATGCTTTTGGTGCTGGTTTGTTCTAGAGGGCGAAATACTCT
TGCTTTGAATTGGCGGATTATCTGTACTGCGATTTCATACATGAACCTAG
CATCAGAGCACAGCAGTATACAAATATGACAGCTATGCATGTTGTACTGT
TATACGACAAAAGTATATTGAGTACAGTACAGTAGTACAGTCAGCAACGA
GGAGCCGTCAGATCGTTCATGGCTTGTACGGATCATTTCACTGATCGGGC
ACATCATCGATTATTTGCACCCGTAAATAAATAGTAACCTCCATGCGATC
TGTACGATCTCATAATAAACACAGTACTGAATCTGAAATTTCATACTTTC
AGAACAGTGGTGTAGAGTACAGACAGATTACCGTACCCAAGTCGACGTAC
GTAACGGGTGACACCAACAGCGACCCTTCTCTTGCGTTATGCTGACGACC
ATCATAATAACTCGAGTTCAGAACTCAAGGATACCTTGGTCATGTTCAAG
GCGGCGAAGGTATAGATGAAGCCGAACATCTTTACTGGTGACGAAATCCA
CGATATGACAGTATTCCCGACCCGTTTGTGACGCGGGACATTGTGAAAAA
CCTTCTGCGAGAGAGAGACGAGTCCCACATCGCCGCCAGTAACATAGCAG
TCTCTTAGACCCTTCCGTAGTTCTGGACTGACAAAAAGATGAAACTACCT
ACGTGTTATCGTGTAGCGATGGATGCAATGTTAATCCAGCCCTCATCCGG
GTTCATTGAAGTGGGCTTCTTCCTCAAATACAACAGAGGACGCGCAGAGA
GGTCGCCCAGTTGAGGGTAATTTAGATATTTGATCATGTGCAGTATACAT
AACATATCGAAAGATCGCACGTATGGTGATCGATTGTATGTTTTTGCTTT
TTACACTGCTGCAGTGGTACTGTGTGTTTAGCCGTATTCGACGTACCGCC
TTGGTATTGATGATGTGGTGACTAGACGTTTACCAAAAGAAACAAAAAAA
GCGGCTTAGAACATGGCAACACAACTGAGGGATGTGTGCGTGTAACGGCC
AGAGCAGAGGCTAGCGTTTAGCGATGGTGGCCAGCACCCCCTGTGGCTCA
GTTTGTTTTGTTTTGCTTTGTTTGATACCATCGACAACCTAGAAGGTAAA
ACCCTTCCTCCCACTTAGTATCCGCCGTCGACAACTGTCGACATCGCAGG
TTCGTGCACGGCTTAAAAGTCCGCCGACACTGCTACCTCAACCGACCGGT
AGAGGTACTTTTGTCAAGAGATGGGCACCAACACCATACTGGACAGTGTA
GGCAATGTGAAATTTACAACGCACTAAAACCCCCCTATTGGCCTTAGTTC
TTGAGGCGCCAAGTGGCACAGCGTAACTCTGTGTCACCACAGAAACACCC
CCTACCCGATTCAGAGCACAGGTCGCCCCGATTTTTCTGGGGGTTTTTTA
CTTCATTTACCTGTAAAATCGAAGAGAACATGAGCTCTTGAGGGTACCAT
ACCTTGCCGGCGCCCCGAGATTTTCATCAGGACCAGACAGAATTCTAATT
TTAGCATCATATAATTTAATACTTTTACTTGAAACTTTGCTACTACTCTG
ATTTAATAGTGTTACAACAATAGATTAGCGCATTTCTTGAATATGAATAA
TATACCGATCAAGACAATCACCATTTACACCAACCGGTATTAAAATTAGG
GTAAACCTTATTTGTCTGATTTTGACGTGAATTCCAAATTCAGCTGCGTC
CATTGGGCACTAATTTAACCTCACGTCGACGGTCGCATATTAGTTTGGTG
GCAAGCTCTGCACTGCCACCTGGACTTGGAAATTTAGTACCATGGTACCA
AGATATATTTTTTGCGAACATATCGAGCGATATTGCACTCACTGGACGAA
TAAACATACTTCGAGGATTCGTAGCGGCACTTATCAGCCGATCCTCGAAA
TAAAGGATCGATCTTCTCGTCAAGGATGGACCATCTGAGCTATAACTTTT
GTTGACGTGGCAAACGCAAGAAACCGAGAGGCGGAAAATTAACTGTTACA
TATATCACACATCACATATTGCCGCCGACATTACCAACTAAGCTTGATAC
AGAATGCCGATGGGATAGTCGCGGGACTGCGGTCTTGGAGCTATGGAGTC
CCCGTCGCTGGGCGGCGATGGCGACCTTCAGATGTTGTTGCAAGAGTGTC
CTATACACAATACTGTCCCCTGCACCTCAAAACACACTTCGCGGAAGCGG
CCGATAACATACACGGTGTATGTAAGGGTTTGATCTGGAGAACGACGAGC
CTATTCTACTGCCCTCCCCCAAGAAGAGTAAACAACGGCCAGCATACCTG
GACATCTCGTCTTGGTTAAACATGCACGAGACTTGGACGTATATCTTCTC
ATACTCTACCTTCGATTTATTTCTGTCCGATAATTTTCTCCGAGAAGACC
ACCAATAACCCAGACTCATGAGATATAAGTACTATTGGGAAAAAAAAACA
CTCGGCCGTGTGCTTATTTTCATGGCGTCTGTTTCGAAGTTAAATAGTCA
CCTATTCTACTTACTGTTCTGAGGATTAACGTACAAAACAAATTAAGATT
CAAATAAGAAAAAAAAGACCGAGATAATTGTAACCTTATCCGGTCAAGAG
TTACTGTACTTGTGGGAAAGAGGAAGTATATATATATATATATATATATA
TATGCAGATTTCTGGCCAATCTTTGCATCTAATGTTTCACTGTAACGCTT
ATGTCAACGAATAAAATACACTCTACAACAACTACCCCCAGACGGGATAG
GACTTCTTGGATTATTCATTTACGAAAATACAACACTTTTTAGCCTGAAT
TCACTTCTTATCGTAGGAGGATTTTCGAGAGATGAATTTTTTGCCTAGTC
ATGCGAAAGTAGTCAACATGCAAGTTATACTTTCGCAAATTTGAGATCAA
TGAAACTCAAATATACCATTCGAGATGCTTAGGCCTTTGGCTTGCATCGT
GCTTTTTAGAAAAAGCAAAAGTCAATTCAAAAATGGTTGGGAAAAACGTC
ATCTCAACTCGACCATTTTTCCTGGAAATGGCAAATGATGCGAAGACAGC
AAGATCAACCGATAACGGCTGGATGGCACCCCTTGGGCTTACAACATCGT
AGAAGACCTCCGATGAAAACGGTTTGTTGGGTTGGACTCCTTGGGAAAAT
GCAGGTTGAGTTCCATCATCATCGCACTCCCAGCCGCTTCTCGTCGCCCT
CCACCTCCACAACACAACGGTTGGGACAGAGGACTATTTCTGAGAAAAAC
AAATTACCCTTCTTTCGGTCGAGTACTTGTTCTCACGCCGTGTGTTTAGG
TATTGAAAGGTAGTCATTTGACAAAATATTTCGGGGTTCAACCTCGAAAA
CACGTGGGACCTGAGTAAAAAATGGAAAAAGGCGATCTTTTTGAGTGCCT
CTCTACACAAAAGGTATTACACTACCCATGGGTCAAATTCTTCTCGAAAC
ATTATTTTTTGTTTTTCTGCTTTTTCGGGCATCGCGAATTATCAGGGTCG
ACCTTTGATCCCAAAATATGGGGATCGATATATATATATATGCAACACGT
AAAGGGGAAAATGTTATTTTCTACGATGAAATTTGAACGAGGTTCGGGCT
TACCGGTCGTCGGGGGTCCTGCCCTATCTGCTCCCCAATTTTTGGCTCTT
CGCTTTTCGTTTTTGATCGAACCTGTCCCTAAATCTTTCGTGGAAAGGGT
GACGGCTTCAGTCGTCAAATTTTCAAGAAATCCATGGTGCTAAGCTCAAC
TAACCGTGTTTTTGACCAAAATACGGTGAACAACACCCCCCTCCCTCCTC
CCAAAAAACATGTTTTTCTCCCATACTGTTCTGTTAATACAAAATTGGAA
CATATTTCCCATGAACGACCTATTTCTCATGCCAAAATCTACCAATCTTG
AATATTTTGAGAGAAAGTGACAAATATTCGGCGAACAAGCGGAAAAAACA
CACGAAGAGTTGACCTGTGGGTACTGTATACGTACGGAACAGGGGAAATA
GACGTATCTCTATAGTACAATATTGCCGTTGAGTTATCGTATGGCCCAGT
CCAGGTATGCTGCAGTAGCATTCGACATACTGTGTTTCGACATGATCGTC
AGTGTTGAGTTTTCCCGAAAGTTCTGGATATTCTTCGTCACAGTTTCACC
TAGGGTTTTAAAGTTCCCATGAGTATTTACTCTTGAATACTAGTGCCGGG
TACTTCTCTTGAAGTCGTTGTCAAGACATCTTGATAAATGTTCTGAAGTC
CATCCCACCTTACCATTGACATCGTTGTATAGCTCCAGCACCGAACGTGT
GCACAGCCCAGTGCGTGGCTGCTAGTATATTGTAGTATCTCCAGTATCCA
GTACTTGCACTACGCTCCGGTATTAGCGAACACGGACTCCTGAATGTCCT
GATCATTCTACTGTTTCTCTAAAAGCGATGCGACAAAGACCCTGTGCTGT
GGAGATTTACTATTTGGTGGCAAAGAAATGGATAAATTCATTTTTGGAGA
AGTAATAGGCGTCGAAAATTGGTCCCCGATTTTTAGATTTCGCGGCGTTA
CATACCTACTAGTTCAGCAGGTCGATGGTACAGTTGCTATCCTTTCATAT
TTGCTGAAGTTACCGTCATCCCCTACGTACTGCAGTCCCTTACGCCCACA
CTCCCTTCGTCAATCTATTTTCTACCTAAACATCTTGGGGAGGCTGTACA
CATACCTGAAGCGAAGTTACAAGCTCCACTTTCTGTGACCCTCGTCTTGC
ACCCCCGCTAAATCAACTATCATCCAACCAACAATCGATGTCTGTCCTCC
CACACCCACACCGTCCGCTACAGGAGGATGAGGATTTGTTAAACTACTTC
CTCTCGGGCGATGGCCTCGAGAGCGGCGGCCTGGGCAGTGCTTCTCCCCC
GAGGACCGGGTCGCTAATGGATGGCAGGTACTACTATTATGTTGTCATTG
AACGTGTATTATGTTGTCATTGAACGTGTACTACGTCCAGAAGTAGGGAA
GGAGACATGGAAAGTAATGTAAGGGGGGTGGGGAGAGGTTGGGTGATGGA
TCTTCAGGATTGATGATAGGCAATGTAGGTTTGTGTGGGGTAAATGCTTG
TTCTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTAGTGTAGTGCA
GTCAGCCACCGTGTCAACTTGGTGGTCAACCTGACCTTCTTGCGGCCTTG
CCATCGGGTTTCCCCGGCAGCTGTACCGTACACCCTTGCGGAAGCCTATT
TACAAGCAGGGGGGTGAGTTTCACGTCTTGCTTTGGTCAACTGTCTGTTT
CTCAACAAAGAGGACGACGGCCGTACTTACGAGCGCGAAGGACTCCCATG
GTTGATGTCGCGAGTTGTATGAAACTCGTAATCCAGATGAATGCCCTTAA
CAGTAAGCAAAAATCTGGGAAGGACATTTTTGGGGTCGACGTATGGAAAG
TGGTGGGAGGGTTACACCGTTGTAGCGAAGCAAGAACTTTCCGTGAACAT
CAGAGCTTTTAGTAAGGCGACTGGCGATTTTTTTTGGTTTTGACCTCGTT
GTTGACCTTGCTGTTAGTATTGTTTTGATACACATTGTATACCCCAGGTC
CCCACCTTACGCCGCGCCGCCGTCGCAGCCCTGATGCTGATGATATTGAT
GCTGCTGTCGCTACGGCCGCATTTTAAACGGAGAATATGCCGGTTGTTTT
TATTCCGGTTCTGCTCCTGCTTTTTGCCGTCTTACAAAAAAATTCAGCTC
CGCACGTCGCGGGGATCCAACCGGCGGGTCGTTCGACGCCTTGGCAAGCG
TTCACGGTGTGTGGGGATCCTCTCCAAACACCCATTCGTCTCTTTCCATG
TCGCCGCCGCTCGGGCTCTCGGAGCTGTTGCGCAGCCCCGTCCCCAAGAG
CGAGATCGACATGGAGGTCACCAGCCACACCGCCATCCCGCATACCACTC
TCAATAGCGCCGACGTTGGTCTGGGTGGCATGAACATCGTCGCCAGCACT
GGAGGTGATGAGGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig2426:1490..7904+

>mRNA_H-paniculata_contig2426.6572.1 ID=mRNA_H-paniculata_contig2426.6572.1|Name=mRNA_H-paniculata_contig2426.6572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig2426:1490..7904+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCAGGAGACCCGTTTCTGCCCCAGGATGGGATGATGCATATGGGAGA
CAGCGTTTTGGGGGAAGAAAGCACAGGGGATCTAATGCACATGGATATAG
CAGCCGATGACAATGCTAACATTTCACCTAGAGCACACCACCCTCACCAT
CATCCCACTGGTAATCTCGAGCAGGGGCAGTTGGATGCTGCCGCACCTGG
CGACCACGGGGCGCTAAGCGGAGAGTTTGCCTTCGATATTCAAGGCGACG
TTGGGGGAGAACTGCAGATGTCAGGAGACCCGTTTCTGCCCCAGGATGGG
ATGATGCATATGGGAGACAGCGTTTTGGGGGAAGAAAGCACAGGGGATCT
AATGCACATGGATATAGCAGCCGATGACAATGCTAACATTTCACCTAGAG
CACACCACCCTCACCATCATCCCACTGGTAATCTCGAGCAGGGGCAGTTG
GATGCTGCCGCACCTGGCGACCACGGGGCGCTAAGCGGAGAGTTTGCCTT
CGATATTCAAGGCGACGTTGGGGGAGAACTGCAGGAGGATGAGGATTTGT
TAAACTACTTCCTCTCGGGCGATGGCCTCGAGAGCGGCGGCCTGGGCAGT
GCTTCTCCCCCGAGGACCGGGTCGCTAATGGATGGCAGGAGGATGAGGAT
TTGTTAAACTACTTCCTCTCGGGCGATGGCCTCGAGAGCGGCGGCCTGGG
CAGTGCTTCTCCCCCGAGGACCGGGTCGCTAATGGATGGCAGCTCCGCAC
GTCGCGGGGATCCAACCGGCGGGTCGTTCGACGCCTTGGCAAGCGTTCAC
GGTGTGTGGGGATCCTCTCCAAACACCCATTCGTCTCTTTCCATGTCGCC
GCCGCTCGGGCTCTCGGAGCTGTTGCGCAGCCCCGTCCCCAAGAGCGAGA
TCGACATGGAGGTCACCAGCCACACCGCCATCCCGCATACCACTCTCAAT
AGCGCCGACGTTGGTCTGGGTGGCATGAACATCGTCGCCAGCACTGGAGG
TGATGAGGGTCTCCGCACGTCGCGGGGATCCAACCGGCGGGTCGTTCGAC
GCCTTGGCAAGCGTTCACGGTGTGTGGGGATCCTCTCCAAACACCCATTC
GTCTCTTTCCATGTCGCCGCCGCTCGGGCTCTCGGAGCTGTTGCGCAGCC
CCGTCCCCAAGAGCGAGATCGACATGGAGGTCACCAGCCACACCGCCATC
CCGCATACCACTCTCAATAGCGCCGACGTTGGTCTGGGTGGCATGAACAT
CGTCGCCAGCACTGGAGGTGATGAGGGT
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