mRNA_H-paniculata_contig2425.6567.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2425.6567.1
Unique NamemRNA_H-paniculata_contig2425.6567.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2425.6567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2425contigH-paniculata_contig2425:11550..11888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929699.1214623-CDS-H-paniculata_contig2425:11549..118881622929699.1214623-CDS-H-paniculata_contig2425:11549..11888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2425 11550..11888 +
1691480972.0536292-CDS-H-paniculata_contig2425:11549..118881691480972.0536292-CDS-H-paniculata_contig2425:11549..11888Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2425 11550..11888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2425.6567.1prot_H-paniculata_contig2425.6567.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2425 11550..11888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2425.6567.1

>prot_H-paniculata_contig2425.6567.1 ID=prot_H-paniculata_contig2425.6567.1|Name=mRNA_H-paniculata_contig2425.6567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
RVVVIICTSLWGSGGKRRDCERPQRAAKPFKMNRKTRPSDEKVNRSSFRN
ANSEQNNRTESLAHRENTTEPNATIRFELEHDPEEICRNYKSAQTYGTEG
VTSIKGGLYVCK*
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mRNA from alignment at H-paniculata_contig2425:11550..11888+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2425.6567.1 ID=mRNA_H-paniculata_contig2425.6567.1|Name=mRNA_H-paniculata_contig2425.6567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at H-paniculata_contig2425:11550..11888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGTGGTTGTGATAATTTGTACGAGTTTGTGGGGCTCTGGGGGCAAGCG
AAGAGATTGTGAGAGACCACAACGCGCTGCAAAACCATTCAAAATGAACC
GAAAAACGCGTCCAAGTGACGAAAAGGTCAACAGGAGTTCTTTTCGGAAC
GCAAATTCGGAACAAAACAATAGAACAGAATCTCTTGCTCATAGGGAAAA
TACCACGGAACCCAACGCAACAATCCGTTTTGAACTTGAACATGATCCCG
AGGAGATATGCAGAAATTATAAAAGTGCCCAGACTTACGGAACAGAGGGA
GTTACAAGTATAAAAGGGGGATTATATGTGTGCAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2425:11550..11888+

>mRNA_H-paniculata_contig2425.6567.1 ID=mRNA_H-paniculata_contig2425.6567.1|Name=mRNA_H-paniculata_contig2425.6567.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig2425:11550..11888+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGTGGTTGTGATAATTTGTACGAGTTTGTGGGGCTCTGGGGGCAAGCG
AAGAGATTGTGAGAGACCACAACGCGCTGCAAAACCATTCAAAATGAACC
GAAAAACGCGTCCAAGTGACGAAAAGGTCAACAGGAGTTCTTTTCGGAAC
GCAAATTCGGAACAAAACAATAGAACAGAATCTCTTGCTCATAGGGAAAA
TACCACGGAACCCAACGCAACAATCCGTTTTGAACTTGAACATGATCCCG
AGGAGATATGCAGAAATTATAAAAGTGCCCAGACTTACGGAACAGAGGGA
GTTACAAGTATAAAAGGGGGATTATATGTGTGCAAATAACGGGTGGTTGT
GATAATTTGTACGAGTTTGTGGGGCTCTGGGGGCAAGCGAAGAGATTGTG
AGAGACCACAACGCGCTGCAAAACCATTCAAAATGAACCGAAAAACGCGT
CCAAGTGACGAAAAGGTCAACAGGAGTTCTTTTCGGAACGCAAATTCGGA
ACAAAACAATAGAACAGAATCTCTTGCTCATAGGGAAAATACCACGGAAC
CCAACGCAACAATCCGTTTTGAACTTGAACATGATCCCGAGGAGATATGC
AGAAATTATAAAAGTGCCCAGACTTACGGAACAGAGGGAGTTACAAGTAT
AAAAGGGGGATTATATGTGTGCAAATAA
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