mRNA_H-paniculata_contig24204.6558.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24204.6558.1
Unique NamemRNA_H-paniculata_contig24204.6558.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: D7G899_ECTSI (UBA/TS-N domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G899_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 2.570e-27
Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 1 
Query:    1 NRAHLRPLEPEEQIAEIPCKKQFVLVTGTAERESKFQEMKRAAARASGG---TGSFLAFHGSRPEHWHGILQEGLKNMS 228
            NRAHLRPL   E I EIPC+KQF LVTGTAERE++FQ +KR AA  SGG   TGSF AFHGS P +WHGILQEGLKNMS
Sbjct:  637 NRAHLRPLREWELIPEIPCQKQFTLVTGTAEREARFQVLKREAALLSGGETGTGSFYAFHGSGPGNWHGILQEGLKNMS 715
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: A0A6H5JD35_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD35_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.560e-27
Identity = 57/79 (72.15%), Postives = 62/79 (78.48%), Query Frame = 1 
Query:    1 NRAHLRPLEPEEQIAEIPCKKQFVLVTGTAERESKFQEMKRAAA---RASGGTGSFLAFHGSRPEHWHGILQEGLKNMS 228
            NRAHLRPL   E I EIPC+KQF LVTGTAERE++FQ +KR AA   R   GTGSF AFHGS P +WHGILQEGLKNMS
Sbjct:  704 NRAHLRPLREWELIPEIPCQKQFTLVTGTAEREARFQALKREAALLSRGGTGTGSFYAFHGSGPGNWHGILQEGLKNMS 782
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: D7FUS3_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS3_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 6.570e-27
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 NRAHLRPLEPEEQIAEIPCKKQFVLVTGTAERESKFQEMKR-AAARASGG--TGSFLAFHGSRPEHWHGILQEGLKNMS 228
            NRAHLRPL   E I EIPC+KQF+LVTGTAERE+KFQ MKR A +R SGG  TGSF AFHGS+P++WHGIL  GL+NMS
Sbjct:  750 NRAHLRPLRGSEVIPEIPCEKQFMLVTGTAEREAKFQTMKRIAGSRRSGGSGTGSFYAFHGSKPDNWHGILHMGLRNMS 828
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: D8LFE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE1_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.460e-26
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    4 RAHLRPLEPEEQIAEIPCKKQFVLVTGTAERESKFQEMKRAAARASGGTGSFLAFHGSRPEHWHGILQEGLKNMS 228
            RAHLRPL  +E I EIPC KQF+LVTGTAERE+ FQ MKR AA ++G TGSF AFHGS+P++WH ILQ GLKNMS
Sbjct:  295 RAHLRPLREDEIIREIPCAKQFMLVTGTAEREANFQRMKREAA-SNGRTGSFFAFHGSKPDNWHAILQLGLKNMS 368
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: A0A6H5JHW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW3_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 5.720e-26
Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    4 RAHLRPLEPEEQIAEIPCKKQFVLVTGTAERESKFQEMKRAAARASGGTGSFLAFHGSRPEHWHGILQEGLKNMS 228
            RAHLRPL  EE I EIPC KQF+LVTGTAERE+ FQ MK+ AA ++G TGSF AFHGS+P++WH ILQ GLKNMS
Sbjct:  529 RAHLRPLREEEIIREIPCAKQFMLVTGTAEREANFQRMKKEAA-SNGRTGSFFAFHGSKPDNWHAILQLGLKNMS 602
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: A0A7S0QIR1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QIR1_9CRYP)

HSP 1 Score: 74.7 bits (182), Expect = 1.840e-14
Identity = 38/77 (49.35%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:    4 RAHLRPLEPEEQIAEIP--CKKQFVLVTGTAERESKFQEMKRAAARASGGTGSFLAFHGSRPEHWHGILQEGLKNMS 228
            R H+R L PEEQ+  +P     QFV+++G+ E E++F+  + AA  A+GG+GSF A+HGS   +WH IL+ GLKNMS
Sbjct:   37 RTHIRRLGPEEQVRGVPDGWTHQFVMLSGSPEHEARFRAARAAARAATGGSGSFHAWHGSPLCNWHSILRLGLKNMS 113
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: A0A6H5JN35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN35_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 6.920e-12
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:   79 TGTAERESKFQEMKR-AAARASGG--TGSFLAFHGSRPEHWHGILQEGLKNMS 228
            +GTAERE+ FQ MKR A +R SGG  TGSF AFHGS+P+ WHGIL  GL+N+S
Sbjct:    4 SGTAEREATFQTMKRIAGSRRSGGSGTGSFYAFHGSKPDSWHGILHVGLRNVS 56
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BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Match: A0A0S4JMD4_BODSA (Poly [ADP-ribose] polymerase n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4JMD4_BODSA)

HSP 1 Score: 67.4 bits (163), Expect = 2.360e-11
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    1 NRAHLRPLEPEEQIAEIPCKKQFVLVTGTAERESKFQEMKRAAARASGGTGSFLAFHGSRPEHWHGILQEGLKNMS 228
            NR+HL  ++P  QI+ +    QF+L+T   E+E+ F+E K          G+  AFHGSR E+WHGIL+ GLKNMS
Sbjct:  512 NRSHLIQMDPSAQISAMGTPHQFLLLTAPPEKEAIFRERKAKH-------GTKFAFHGSRAENWHGILRNGLKNMS 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24204.6558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G899_ECTSI2.570e-2773.42UBA/TS-N domain containing protein n=1 Tax=Ectocar... [more]
A0A6H5JD35_9PHAE6.560e-2772.15PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7FUS3_ECTSI6.570e-2772.15PARP catalytic domain-containing protein n=1 Tax=E... [more]
D8LFE1_ECTSI1.460e-2672.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHW3_9PHAE5.720e-2672.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0QIR1_9CRYP1.840e-1449.35Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A6H5JN35_9PHAE6.920e-1266.04Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A0S4JMD4_BODSA2.360e-1146.05Poly [ADP-ribose] polymerase n=1 Tax=Bodo saltans ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24204contigH-paniculata_contig24204:172..970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue5.2e-23
Seed eggNOG ortholog2880.D7G899
Preferred namePARP8
KEGG koko:K15258
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0120035,GO:1900006,GO:2000026
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGs28HD2@1,2QPRC@2759
EC2.4.2.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.4766557-CDS-H-paniculata_contig24204:171..2531622929697.4766557-CDS-H-paniculata_contig24204:171..253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24204 172..253 +
1691480971.4594529-CDS-H-paniculata_contig24204:171..2531691480971.4594529-CDS-H-paniculata_contig24204:171..253Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24204 172..253 +
1622929697.4869409-CDS-H-paniculata_contig24204:824..9701622929697.4869409-CDS-H-paniculata_contig24204:824..970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24204 825..970 +
1691480971.4703553-CDS-H-paniculata_contig24204:824..9701691480971.4703553-CDS-H-paniculata_contig24204:824..970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24204 825..970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24204.6558.1prot_H-paniculata_contig24204.6558.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24204 172..970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24204.6558.1

>prot_H-paniculata_contig24204.6558.1 ID=prot_H-paniculata_contig24204.6558.1|Name=mRNA_H-paniculata_contig24204.6558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
NRAHLRPLEPEEQIAEIPCKKQFVLVTGTAERESKFQEMKRAAARASGGT
GSFLAFHGSRPEHWHGILQEGLKNMS
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mRNA from alignment at H-paniculata_contig24204:172..970+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24204.6558.1 ID=mRNA_H-paniculata_contig24204.6558.1|Name=mRNA_H-paniculata_contig24204.6558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=799bp|location=Sequence derived from alignment at H-paniculata_contig24204:172..970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCGTGCTCACCTGCGTCCTTTAGAGCCGGAGGAGCAGATTGCTGAGAT
CCCATGCAAGAAGCAATTCGTCTTGGTGACAGGTGACAAGACACAGCTGT
ACTTGAAAAATGGATACTTGTTCAACAGTATGCATTGAGCCCTATCTCTC
TCTTTCTCTCTCTCTCCTAAAATGTATACTTCCTCTGTCTCGCAAGTATA
CTCAGTTGTGTTCGTTTGTAGAGGCACTTGAATGTGTCTGTTTTTTCTTT
TTGTTTTTTTTCTACATGTTTTTGGGGTTGAAACCTATTTTTGGGGGTCC
AACAGTTAACGTTTAACACCGAAACACGCGCCGTGAAAAAAAGTACTCGA
CCGAGAAAAGGCCCTTCTTTGGGACTTCATGCAATATAATTGGAAAAAAA
CATGCACTTTTTAGCGTTTTTCGGCCGAGTGCTTTTTTTCATAGCGTATG
TTTTGGCCTTAAAAGTCAACTGTTTGACTCTATATTTTTTGGGGTTCAAC
CCCAAAAACTTGTTGGAGTTTAAGTTGAAATAAAATGAAGAAATCGGAGA
TCGTCCGAGTGCGTCTTTACTCTTGACATACTATACTTGCGGGACAAGTA
CTTATGCGTGAAGATTTTTTTCTCGTATGCTCCTCTTGGCTGCGGTGGGG
AAGGCACCGCGGAGCGAGAGTCTAAGTTTCAGGAGATGAAGAGAGCGGCG
GCTAGGGCGAGCGGGGGTACGGGATCGTTCCTCGCTTTCCACGGCAGTAG
GCCGGAGCATTGGCACGGAATTCTGCAAGAGGGGCTCAAGAACATGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig24204:172..970+

>mRNA_H-paniculata_contig24204.6558.1 ID=mRNA_H-paniculata_contig24204.6558.1|Name=mRNA_H-paniculata_contig24204.6558.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig24204:172..970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATCGTGCTCACCTGCGTCCTTTAGAGCCGGAGGAGCAGATTGCTGAGAT
CCCATGCAAGAAGCAATTCGTCTTGGTGACAGAATCGTGCTCACCTGCGT
CCTTTAGAGCCGGAGGAGCAGATTGCTGAGATCCCATGCAAGAAGCAATT
CGTCTTGGTGACAGGCACCGCGGAGCGAGAGTCTAAGTTTCAGGAGATGA
AGAGAGCGGCGGCTAGGGCGAGCGGGGGTACGGGATCGTTCCTCGCTTTC
CACGGCAGTAGGCCGGAGCATTGGCACGGAATTCTGCAAGAGGGGCTCAA
GAACATGTCGGCACCGCGGAGCGAGAGTCTAAGTTTCAGGAGATGAAGAG
AGCGGCGGCTAGGGCGAGCGGGGGTACGGGATCGTTCCTCGCTTTCCACG
GCAGTAGGCCGGAGCATTGGCACGGAATTCTGCAAGAGGGGCTCAAGAAC
ATGTCG
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