mRNA_H-paniculata_contig2420.6555.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2420.6555.1
Unique NamemRNA_H-paniculata_contig2420.6555.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2420.6555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2420contigH-paniculata_contig2420:2454..3226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size773
Cds size501
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.392597-UTR-H-paniculata_contig2420:2453..27251622929697.392597-UTR-H-paniculata_contig2420:2453..2725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2420 2454..2725 +
1691480971.4325097-UTR-H-paniculata_contig2420:2453..27251691480971.4325097-UTR-H-paniculata_contig2420:2453..2725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2420 2454..2725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929697.406366-CDS-H-paniculata_contig2420:2725..32261622929697.406366-CDS-H-paniculata_contig2420:2725..3226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2420 2726..3226 +
1691480971.4405332-CDS-H-paniculata_contig2420:2725..32261691480971.4405332-CDS-H-paniculata_contig2420:2725..3226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2420 2726..3226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2420.6555.1prot_H-paniculata_contig2420.6555.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2420 2726..3226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2420.6555.1

>prot_H-paniculata_contig2420.6555.1 ID=prot_H-paniculata_contig2420.6555.1|Name=mRNA_H-paniculata_contig2420.6555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MCCRASDDEAATFATATPSSPATTLALLLAKYADLPANVVRETANISVAA
PSATSSRSGAPPIAAALHVPPPPSSPNTTGSAEAATPKREVLSAAPPKKL
LRRWGGANSISPQPCRLFSFSRTIPSIHMSPPPPPSRGIEVDVFCKKKRF
GRSGPTVPPCSRSLNTW
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mRNA from alignment at H-paniculata_contig2420:2454..3226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2420.6555.1 ID=mRNA_H-paniculata_contig2420.6555.1|Name=mRNA_H-paniculata_contig2420.6555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=773bp|location=Sequence derived from alignment at H-paniculata_contig2420:2454..3226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTTGGAAAAAAAGCCAAAGGTTAAAATTTGTACTTCGAGCAAAAAACGA
GTATTATTTTTTACTCTGCATGTATATACTCGCTACAATATATCGACTTT
ACTCCCCTTCTTCTCCCTACTCACGGAAGCAAAACAAGAAGGCATCTCTG
GTCGAATCAATCACGCTATGACAACCCTTTTCTCTGCAGTACTAGTAGTA
GCACTAGTAGTAGAGCTTGTGTGACTAACTCCTTTCCTTAGCGATGCAGA
CAAACGGGCATGTACGGAAGCCATGTGCTGCAGGGCTTCCGATGATGAAG
CCGCCACGTTCGCTACCGCCACACCCTCATCACCAGCGACAACATTGGCT
TTATTGCTAGCCAAGTATGCTGATTTACCCGCCAATGTAGTGCGAGAAAC
CGCAAACATTTCGGTTGCTGCTCCGTCCGCTACGTCTTCTCGTTCCGGGG
CACCTCCTATAGCAGCTGCGCTGCATGTACCACCACCGCCGTCGTCTCCC
AACACTACGGGCTCAGCTGAAGCGGCTACACCGAAGAGAGAAGTTCTCTC
AGCAGCACCACCGAAAAAACTGCTTCGTCGTTGGGGCGGGGCAAACTCGA
TCTCACCCCAGCCATGTCGTTTGTTTTCCTTCTCTCGCACCATCCCATCG
ATACACATGTCACCACCACCACCACCATCACGAGGGATCGAAGTCGATGT
TTTTTGCAAGAAGAAACGTTTTGGTCGATCGGGGCCAACCGTCCCACCCT
GCTCGCGCTCCCTCAACACCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2420:2454..3226+

>mRNA_H-paniculata_contig2420.6555.1 ID=mRNA_H-paniculata_contig2420.6555.1|Name=mRNA_H-paniculata_contig2420.6555.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig2420:2454..3226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTGCAGGGCTTCCGATGATGAAGCCGCCACGTTCGCTACCGCCAC
ACCCTCATCACCAGCGACAACATTGGCTTTATTGCTAGCCAAGTATGCTG
ATTTACCCGCCAATGTAGTGCGAGAAACCGCAAACATTTCGGTTGCTGCT
CCGTCCGCTACGTCTTCTCGTTCCGGGGCACCTCCTATAGCAGCTGCGCT
GCATGTACCACCACCGCCGTCGTCTCCCAACACTACGGGCTCAGCTGAAG
CGGCTACACCGAAGAGAGAAGTTCTCTCAGCAGCACCACCGAAAAAACTG
CTTCGTCGTTGGGGCGGGGCAAACTCGATCTCACCCCAGCCATGTCGTTT
GTTTTCCTTCTCTCGCACCATCCCATCGATACACATGTCACCACCACCAC
CACCATCACGAGGGATCGAAGTCGATGTTTTTTGCAAGAAGAAACGTTTT
GGTCGATCGGGGCCAACCGTCCCACCCTGCTCGCGCTCCCTCAACACCTG
GATGTGCTGCAGGGCTTCCGATGATGAAGCCGCCACGTTCGCTACCGCCA
CACCCTCATCACCAGCGACAACATTGGCTTTATTGCTAGCCAAGTATGCT
GATTTACCCGCCAATGTAGTGCGAGAAACCGCAAACATTTCGGTTGCTGC
TCCGTCCGCTACGTCTTCTCGTTCCGGGGCACCTCCTATAGCAGCTGCGC
TGCATGTACCACCACCGCCGTCGTCTCCCAACACTACGGGCTCAGCTGAA
GCGGCTACACCGAAGAGAGAAGTTCTCTCAGCAGCACCACCGAAAAAACT
GCTTCGTCGTTGGGGCGGGGCAAACTCGATCTCACCCCAGCCATGTCGTT
TGTTTTCCTTCTCTCGCACCATCCCATCGATACACATGTCACCACCACCA
CCACCATCACGAGGGATCGAAGTCGATGTTTTTTGCAAGAAGAAACGTTT
TGGTCGATCGGGGCCAACCGTCCCACCCTGCTCGCGCTCCCTCAACACCT
GG
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