mRNA_H-paniculata_contig11004.656.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11004.656.1
Unique NamemRNA_H-paniculata_contig11004.656.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: D7G5V3_ECTSI (GTPase activating protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V3_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 5.960e-82
Identity = 123/159 (77.36%), Postives = 142/159 (89.31%), Query Frame = 1
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVEVRGRAVS 477
            VQYCQG+NYI +LFLLYMPEENAFW+LVA+M RP APLRELFLPGM+KAQEFQFV++SLT K+C+ L+ Q+L ++LTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLED+KVFYRVCLALFKSVE +AA LDLE +N+LLRNMP  VDA ++   A S
Sbjct:  125 VQYCQGVNYITSLFLLYMPEENAFWMLVATMNRPCAPLRELFLPGMLKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFKSVEGKAAALDLENLNLLLRNMPPNVDAQQILDIAAS 283          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A6H5L2H2_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2H2_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.970e-78
Identity = 125/159 (78.62%), Postives = 142/159 (89.31%), Query Frame = 1
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVEVRGRAVS 477
            VQYCQGINYI +LFLLYMPEENAFW+LVASM RP APLRELFLPGM+KAQEFQFV++SLT K+C+ L+ Q+L ++LTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLED+KVFYRVCLALFKSVE +AA LDLE +N+LLRNMP  VDA ++   A S
Sbjct:  478 VQYCQGINYITSLFLLYMPEENAFWMLVASMNRPCAPLRELFLPGMLKAQEFQFVMDSLTKKHCEKLSNQILAHNLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDWKVFYRVCLALFKSVEGKAAALDLENLNLLLRNMPPNVDAQQILDIAAS 636          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A835YV67_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV67_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.980e-52
Identity = 88/144 (61.11%), Postives = 108/144 (75.00%), Query Frame = 1
Query:   16 GINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVD 447
            GINYI ALFLLYMPEE AFW+LV  M RP+APLRELFLPGM+KA+EF  V++SLT K+   L   L ++ + P MYA  WF+T FTQ FPY+L TR WD+FL ED+K+ YRVCLALFK VE E   LDLE+ N+++R +P   D
Sbjct:  466 GINYIAALFLLYMPEEEAFWMLVCVMHRPQAPLRELFLPGMLKAREFNHVMDSLTEKFVPKLFRHLQKHDIQPTMYAHPWFITCFTQAFPYELCTRTWDVFLEEDWKIMYRVCLALFKHVETEVCSLDLEQGNLVMRRLPAAAD 609          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A8J5IBD6_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IBD6_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.870e-36
Identity = 73/153 (47.71%), Postives = 90/153 (58.82%), Query Frame = 1
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVEV 459
            V YCQG+ ++ A+FL YMPE+ AFWLLVA +   R  L +L+ P M K  E  FV   L  +    L+A L    L P MY TQWFLT FT  FP++ VTRVWD FL E +KV YRV LAL K  +        E +    R++PNKVD  EV
Sbjct:  149 VGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDTFLHEGWKVIYRVALALMKISQKTLLSSKFEIIMEYFRDLPNKVDTDEV 301          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A7S1G1I4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1I4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.200e-35
Identity = 70/156 (44.87%), Postives = 98/156 (62.82%), Query Frame = 1
Query:    7 YCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVEVRGRAV 474
            YCQG+N++ A+FL+YM EE+AFW+LV  M      LREL+  GMIK+Q   +V + L   Y   LN      ++   M+ATQWFLT ++  F +DLVTR+WD+FL+E +K+ YRV LAL K  E E  +++ E +   LR MP   D  E+  RA+
Sbjct:  252 YCQGMNFVTAMFLMYMSEEDAFWMLVHVMNFEPCKLRELYTVGMIKSQRVLYVGSQLIKHYLPKLNRHFETENICYNMFATQWFLTIYSNSFSFDLVTRIWDIFLVEGWKIVYRVMLALLKKFERELLEMNFEAIMKFLRYMPKLADGPEIIERAL 407          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A0P1B616_PLAHL (Plant adhesion molecule 1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B616_PLAHL)

HSP 1 Score: 135 bits (340), Expect = 1.840e-35
Identity = 73/153 (47.71%), Postives = 90/153 (58.82%), Query Frame = 1
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVEV 459
            V YCQG+ +I A+FL YMPE+ AFWLLVA +   R  L +L+ P M K  E  +V   L  +    L+  L    L P MY TQWFLT FT  FP+DLVTRVWD FL E +KV YRV LAL K  +        E +    R++PNKVD  +V
Sbjct:  185 VGYCQGMGFISAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVLEVTYVFQGLLKQQMPHLSTHLENEGLHPTMYLTQWFLTLFTYNFPFDLVTRVWDAFLHEGWKVIYRVALALMKISQKILMNSKFESIMEYFRDLPNKVDTDDV 337          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A3F2RLQ9_9STRA (Rab-GAP TBC domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RLQ9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.120e-35
Identity = 71/153 (46.41%), Postives = 91/153 (59.48%), Query Frame = 1
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVEV 459
            V YCQG+ ++ A+FL YMPE+ AFWLLVA +   R  L +L+ P M K  E  FV   L  +    L+A L    L P MY TQWFLT FT  FP++ VTRVWD FL E +K+ +RV LAL K+ +        E +    R +PN+VDA EV
Sbjct:  211 VGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKIIFRVALALLKTSQKTLLSSKFEAIMEYFRELPNRVDAEEV 363          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A835Z8H8_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H8_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.130e-35
Identity = 78/170 (45.88%), Postives = 99/170 (58.24%), Query Frame = 1
Query:   13 QGINYICALFLLYMPEENAFWLL----------------------VASMQRPRAPLRELFLPGMIKAQEFQF--VVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDA 450
            +GINYI ALFLLYM EE AFWLL                      +   ++ +  L  L + G++    F F  V++ L  K+   L+  L    + P MYA  WF+T FTQ FPYDLVTRVWD+FL ED+K+ YRVCLALFKSVE E   LDLE+ N++LR +P   DA
Sbjct:  458 EGINYIAALFLLYMTEEEAFWLLQKDEAGHQQLVEGQQPEKVEEGMDDQEKQQENLYRLLVTGLVFLLRFVFHYVMDGLALKFTPRLHNHLKSNDIDPTMYAHPWFMTCFTQSFPYDLVTRVWDIFLKEDWKIMYRVCLALFKSVEDEVCALDLERANMVLRKLPAAADA 627          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: A0A225W6Z9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W6Z9_9STRA)

HSP 1 Score: 134 bits (336), Expect = 6.870e-35
Identity = 71/152 (46.71%), Postives = 90/152 (59.21%), Query Frame = 1
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVE 456
            V YCQG+ ++ A+FL YMPE+ AFWLLVA +   R  L +L+ P M K  E  FV   L  +Y   L+A L    L P MY TQWFLT FT  FP++ VTRVWD FL E +KV YRV LAL K  +        E +    R++PNKV  ++
Sbjct:  198 VGYCQGMGFLSAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFVFEGLFKQYMPQLSAHLESEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALLKISQKTLLSSKFEAIMDHFRDLPNKVRGLD 349          
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Match: D0MU62_PHYIT (Rab-GAP TBC domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MU62_PHYIT)

HSP 1 Score: 133 bits (335), Expect = 1.140e-34
Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 1
Query:    1 VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQEFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVTRVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDAVEVRG 465
            V YCQG+ ++ A+FL YMPE+ AFWLLVA +   R  L +L+ P M K  E  F+   L  +    L+A L    L P MY TQWFLT FT  FP++ VTRVWD FL E +KV YRV LAL K  +        E +    R +PNKV A++  G
Sbjct:  202 VGYCQGMGFLTAMFLCYMPEQQAFWLLVACLNHKRYGLADLYRPRMPKVPEVTFIFEGLFKQLMPQLSAHLENEGLHPTMYLTQWFLTLFTYNFPFEFVTRVWDAFLHEGWKVIYRVALALMKLSQKTLLSSKFELIMEYFRELPNKVRALKAPG 356          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11004.656.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5V3_ECTSI5.960e-8277.36GTPase activating protein n=1 Tax=Ectocarpus silic... [more]
A0A6H5L2H2_9PHAE1.970e-7878.62Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835YV67_9STRA2.980e-5261.11Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A8J5IBD6_9STRA8.870e-3647.71Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
A0A7S1G1I4_9STRA1.200e-3544.87Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A0P1B616_PLAHL1.840e-3547.71Plant adhesion molecule 1 n=1 Tax=Plasmopara halst... [more]
A0A3F2RLQ9_9STRA2.120e-3546.41Rab-GAP TBC domain-containing protein n=3 Tax=Phyt... [more]
A0A835Z8H8_9STRA2.130e-3545.88Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A225W6Z9_9STRA6.870e-3546.71Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
D0MU62_PHYIT1.140e-3445.81Rab-GAP TBC domain-containing protein n=10 Tax=Phy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11004contigH-paniculata_contig11004:5292..8297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.4
Seed ortholog evalue5.7e-64
Seed eggNOG ortholog2880.D7G5V3
KEGG koko:K19944,ko:K20133
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons3
Model size477
Cds size477
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11004.656.1prot_H-paniculata_contig11004.656.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11004 5292..8297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928808.2363591-CDS-H-paniculata_contig11004:5291..54001622928808.2363591-CDS-H-paniculata_contig11004:5291..5400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11004 5292..5400 -
1691480627.868775-CDS-H-paniculata_contig11004:5291..54001691480627.868775-CDS-H-paniculata_contig11004:5291..5400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11004 5292..5400 -
1622928808.2530198-CDS-H-paniculata_contig11004:7160..73841622928808.2530198-CDS-H-paniculata_contig11004:7160..7384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11004 7161..7384 -
1691480627.8787985-CDS-H-paniculata_contig11004:7160..73841691480627.8787985-CDS-H-paniculata_contig11004:7160..7384Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11004 7161..7384 -
1622928808.2665806-CDS-H-paniculata_contig11004:8153..82971622928808.2665806-CDS-H-paniculata_contig11004:8153..8297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11004 8154..8297 -
1691480627.88609-CDS-H-paniculata_contig11004:8153..82971691480627.88609-CDS-H-paniculata_contig11004:8153..8297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11004 8154..8297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11004.656.1

>prot_H-paniculata_contig11004.656.1 ID=prot_H-paniculata_contig11004.656.1|Name=mRNA_H-paniculata_contig11004.656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=159bp
VQYCQGINYICALFLLYMPEENAFWLLVASMQRPRAPLRELFLPGMIKAQ
EFQFVVNSLTAKYCKSLNAQLLRYHLTPAMYATQWFLTAFTQRFPYDLVT
RVWDMFLLEDYKVFYRVCLALFKSVEVEAAKLDLEKMNILLRNMPNKVDA
VEVRGRAVS
back to top

mRNA from alignment at H-paniculata_contig11004:5292..8297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11004.656.1 ID=mRNA_H-paniculata_contig11004.656.1|Name=mRNA_H-paniculata_contig11004.656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3006bp|location=Sequence derived from alignment at H-paniculata_contig11004:5292..8297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCAATATTGCCAGGGAATCAACTACATCTGCGCGCTGTTTCTACTATA CATGCCCGAAGAAAACGCTTTCTGGCTGCTCGTGGCAAGCATGCAGCGAC CGCGGGCGCCGTTGCGGGAGCTGTTTCTCCCAGGCATGATAAAGGTATGA AGTAGGAGGCCCTTTACAAGGCACTGTGAACTTCACAACAAGTGCAGTAA ATATCTGTTTGTTGAGTGTCCATTTTGCTTCTGTATGGCTCGAAGTGAGC GAGCTACAGGTCCCCGGACCCCAGTCGACCTGCTGCACCAACCCCTGACT AGATTTTTTTTTTTTTTTACAATCCGAAAATTCGTAGAACTATAAAAATT TGAAGACTCGACCTCAATTTGGGTCAGCTTACTATGAGCCCCGTACAGGA CCGAAATCGTTATTTACAAACGCATATTTGCTGGCGCAAAAATCTGTTGG TAAGACAGTCAATATGCGTTCCGTTTTGTTCCTAGCTGTGGTACTTGCAG GATTTTTAGTCAGGGGTCCATATTGCTGCCTGCTTTCGTGGACCCCCCCC CCACACACACACCCACACTCACACAGAGTAGGATAGGGAATATGACAGGT ACAAAATGTAACTCTTGTGTACAGTCATGATCTAACCTGCCTCGACAGGA AATGAGGAAATATTATATGCACGACAAGCACGCATGCGTATGATGAATTA ATTTCTGAATAGGCGAGGGTTGGGATAGATGGGATAAATCCATCGTTTTT GAGCCACATTTGGCAAGATGGGGAAAGAGCGAGTGGTTATCAGAAATCAC CCTGATGGGAACAAAGCTCCGTCCTCTCGAGGACGCGTAGTCAATAGCCT ATCAATGACAGCATGCGGGACATGAGTACCTCCCGCTCCCCCTCCCCATG TTCTTTGTGACAGGCCCAGGAATTCCAGTTCGTGGTCAACTCCCTAACTG CCAAGTACTGCAAGTCCTTGAATGCGCAGCTGCTGAGGTATCACCTCACG CCCGCCATGTATGCGACACAGTGGTTCCTGACTGCGTTCACTCAGAGGTT TCCCTACGATCTCGTGACCCGAGTGTGGGACATGTTTCTGCTGGAGGACT ACAAGGTCTTCTACCGTGTGTGCCTCGCGCTTTTCAAGTGAGATTTTAAT AAACGGCTCGTAGATTTTAGCGGGAGATGAGATACTCTCAGTAACAATAC CACGGTTAGAATGTACCGTGATACACACCTGTATTCTATTTGATACTGGT AACCGTGAAAAGTTCGATTTCCCGTTGGTTGTTGCGGTGAGTGGTATAGC AACATGTGATCACCGCAAGATCGGAATCCTTTTCCGTTTACTGTTTCTGT ACCGTTAAGAATCGGAGAAGCCACCACGACCGCGGGTCTGACTGAATATG TTCCTGTATGGTAGCGCCGTGTGCTATGATTTTACGTGTGATCACCGCGA CTCGTGTGGTATTGAGTGCTCACTTTGGTGGCCGCCAGGAATCGGCAAAA GTATGACCGCGGCAGCTGCTAGCAATGGCAACTCGATGCCGCTGGCGCTG CAAATACTTTTGGCTCTTGTGCCTCGAGAAGTGGCGGTGGTGATGCAGAC TCTGTACCCACCCCACCACTGCCGCCTTGCGTAACAGTTGTTCAGCGTGT TGTTGACTGGTGCAATATACTACAATAATCGCCGGTGACGGCGACTACGT CGACGACGTTGCGATACCTCTACATAGTCCACATACCGTATTTTATGTGG ACTCGCTGCCTTCGATGACAGGAGGTGCAGGTAGATACGGAAAGTGTCCA CATCATTATTACACCTCCATGATGAAGAGTGCAACATTAAATTGGAACAG TAAAAATACTGTTTGGACTGTCTTGTTGTTTGTTTGTTGATGGTTGCTTG ACACACACACTCTCTGAACCTTTCGTGATACAAAGAGGTGTCCTCATGGG CCTGCGTCTTTGTTGACCTATCCTGCCGTGTGGCGGCGGCTACCTGTTGT TGTTACGGTTGGCATTGTACTGTGCTGAGCTGTCGGTTTGTCTAATTGTT ACTGTGTTGTGGACAGCGATTGGTGGTCATGTAGAGCCGACCATTTGGAG TTGAACGGCCGCCACCTTACCCTATTACAGTACATAACACATCGTGTAGG GAAAGTACTTGCATTCAGAATTATGACTGTTTAATTCAAGTGCCTTTTCG TACAAGTTAGTGGTCTTTGGCGGTTATAAACTAACTCGTGGAACGATAAA TAGTAAGTGATACATTTATGAGAGATATATGTTTGATGGATCGCAGAAGG AACCTGACAATGTGCCGTACGTGGGATCGGTTTGTGAAGACTCTTTCTGT AGTGTAAGATTGCTTTTACTTGCCAACAACCAAGTAGGAGTCTGCACATG GTCTACAGGCAATAATAATAATGTATACTACATACTATATACAAACAGTA GGGCAGTGGTGGACCCAAGTCAGACAGACCCCCTCGGGCGAGCAATATCG CGTTAACGCCTCATGTAGTAGTGACCGTGTGGGCGCCCGTCAACACCCCT ACAAATAACAGCAATATGATCGCTGACCCGGTCGATTATGTCCGATACGC CTTGTTATCTACACGAGAACCATCTTAACTGTCTATCTTTCAAACTCGTA TTTTGTCACGTGCGTCTGAAAGTTGATTTCTGTTTTAAACTTCATGCGTT AATTGTGATACCCCTTTTAAGCTAGCTGTTTTTATTGTAACCCCCCCCCC CGCGAAAAAAGCCGTTGGAATACAAGAATTCGACATTCATAATAGCCAAG AGAGAGGGAAAGTCGCAATGGCCAAAGTATTGATTCTTTCTCATTTTTTT TTGTATGTGTCTTCTTGGTGTTACGCGGTCGGTGGCTGCGAGGAAAGGTC TGTGGAGGTTGAGGCTGCCAAGTTAGACCTGGAGAAGATGAATATCTTAC TGAGAAACATGCCTAACAAGGTGGATGCCGTCGAGGTGAGAGGTAGAGCC GTTTCA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig11004:5292..8297-

>mRNA_H-paniculata_contig11004.656.1 ID=mRNA_H-paniculata_contig11004.656.1|Name=mRNA_H-paniculata_contig11004.656.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at H-paniculata_contig11004:5292..8297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCAATATTGCCAGGGAATCAACTACATCTGCGCGCTGTTTCTACTATA
CATGCCCGAAGAAAACGCTTTCTGGCTGCTCGTGGCAAGCATGCAGCGAC
CGCGGGCGCCGTTGCGGGAGCTGTTTCTCCCAGGCATGATAAAGGTTCAA
TATTGCCAGGGAATCAACTACATCTGCGCGCTGTTTCTACTATACATGCC
CGAAGAAAACGCTTTCTGGCTGCTCGTGGCAAGCATGCAGCGACCGCGGG
CGCCGTTGCGGGAGCTGTTTCTCCCAGGCATGATAAAGGCCCAGGAATTC
CAGTTCGTGGTCAACTCCCTAACTGCCAAGTACTGCAAGTCCTTGAATGC
GCAGCTGCTGAGGTATCACCTCACGCCCGCCATGTATGCGACACAGTGGT
TCCTGACTGCGTTCACTCAGAGGTTTCCCTACGATCTCGTGACCCGAGTG
TGGGACATGTTTCTGCTGGAGGACTACAAGGTCTTCTACCGTGTGTGCCT
CGCGCTTTTCAAGCCCAGGAATTCCAGTTCGTGGTCAACTCCCTAACTGC
CAAGTACTGCAAGTCCTTGAATGCGCAGCTGCTGAGGTATCACCTCACGC
CCGCCATGTATGCGACACAGTGGTTCCTGACTGCGTTCACTCAGAGGTTT
CCCTACGATCTCGTGACCCGAGTGTGGGACATGTTTCTGCTGGAGGACTA
CAAGGTCTTCTACCGTGTGTGCCTCGCGCTTTTCAAGTCTGTGGAGGTTG
AGGCTGCCAAGTTAGACCTGGAGAAGATGAATATCTTACTGAGAAACATG
CCTAACAAGGTGGATGCCGTCGAGGTGAGAGGTAGAGCCGTTTCAGTCTG
TGGAGGTTGAGGCTGCCAAGTTAGACCTGGAGAAGATGAATATCTTACTG
AGAAACATGCCTAACAAGGTGGATGCCGTCGAGGTGAGAGGTAGAGCCGT
TTCA
back to top