mRNA_H-paniculata_contig242.6550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: D8LN01_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN01_ECTSI) HSP 1 Score: 203 bits (517), Expect = 6.530e-60 Identity = 108/151 (71.52%), Postives = 118/151 (78.15%), Query Frame = 1
Query: 25 AGQAGSRARRLSVGPGTKEPSGLQ--PVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
AG+ GSR R+S T G Q PV +FV ME EAA LC +V +SLG+VKKVVYGTALLTPAIQ GGALIAG+VP WS LWEGPETPQAWL AMARKKASLSRWE +GDLLD P+DLSNLFNPNTFLNAVRQQTAR SGCS+
Sbjct: 304 AGRRGSR--RISAEKATSGAEGRQLPPVDAFVAMEAEAAVCLCEIVAASLGSVKKVVYGTALLTPAIQATGGALIAGRVPPAWSCLWEGPETPQAWLTAMARKKASLSRWEAGVARGDLLDKPVDLSNLFNPNTFLNAVRQQTARLSGCSM 452
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A835ZB15_9STRA (Cytoplasmic dynein 2 heavy chain 1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB15_9STRA) HSP 1 Score: 159 bits (402), Expect = 2.940e-42 Identity = 83/161 (51.55%), Postives = 112/161 (69.57%), Query Frame = 1
Query: 4 GLHTKSEAGQAGSRAR-RLSVGPGTKEPSG----LQPVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
GL S G AG + R + G + SG + PV +FV ME A +L V +SL A+K+V+YGT LLTPAIQ GGAL+A KVPS+W++ WEGPE+PQAWL+ + R++ +L+RW + + LLD PI+LS+LFNPNTFLNAVRQQ+AR +GC++
Sbjct: 652 GLSAGSVNGSAGGAGKDRRNSGGAARRLSGTAAEMTPVAAFVAMEEAQARDLVAHVDASLQAIKRVLYGTGLLTPAIQATGGALMAAKVPSDWTKRWEGPESPQAWLSGLMRRRQALARWLGLSARDALLDTPINLSDLFNPNTFLNAVRQQSARLAGCAM 812
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A7S3UWF6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWF6_HETAK) HSP 1 Score: 150 bits (378), Expect = 5.170e-39 Identity = 70/127 (55.12%), Postives = 92/127 (72.44%), Query Frame = 1
Query: 91 LQPVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
L PV +FV+ME+ A++LC V SSL A+K+V+YG+ +LTP IQ G AL++G VP W + WEGPETPQ WL A+ +KK +LSRW T K +LLD + L LFN TFLNA+RQQTAR +GC++
Sbjct: 721 LDPVSAFVLMEDSGAADLCAFVNSSLMAIKRVIYGSGMLTPIIQATGSALLSGMVPQVWEKKWEGPETPQVWLRAIVQKKLALSRWVTLVHKKELLDTELVLEELFNAGTFLNALRQQTARITGCAM 847
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A1V9ZJN7_9STRA (Dynein heavy chain n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJN7_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.320e-35 Identity = 67/129 (51.94%), Postives = 88/129 (68.22%), Query Frame = 1
Query: 85 SGLQPVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
+G PV +FV MEN +A+EL + V + L +KKV+YGT LLTPAIQ AL+ G+VP++WS WEG E Q WL A+A +K +L+ W+ KG LL P+DLS + P TFLNA+RQQ ART CS+
Sbjct: 3990 AGASPVEAFVAMENASATELAQHVNAGLMNIKKVIYGTGLLTPAIQTIAAALLLGQVPADWSNRWEGSEVVQVWLRALALRKRALAEWKEDCAKGTLLSRPLDLSEVLQPGTFLNALRQQAARTLQCSM 4118
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A485LI71_9STRA (Aste57867_21689 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LI71_9STRA) HSP 1 Score: 140 bits (353), Expect = 1.320e-35 Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 97 PVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
PV +FV MEN AA++L V SL ++KKV+YGT LLTPAIQ AL+ G+VP+EWS WEG E Q WL A+A +K +L W+ KG LL P+DLS++ P TFLNA+RQQ ART CS+
Sbjct: 4017 PVEAFVAMENAAATDLAGHVNQSLQSLKKVIYGTGLLTPAIQTIAAALLVGQVPAEWSNRWEGSEVVQVWLRALALRKRALGEWKEDCAKGTLLSRPLDLSDVLQPGTFLNALRQQAARTLKCSM 4141
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A6G0XG55_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XG55_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.260e-35 Identity = 67/134 (50.00%), Postives = 92/134 (68.66%), Query Frame = 1
Query: 70 GTKEPSGLQPVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
G+K+ + PV +FV MEN AA++L V + L ++KKV+YGT LLTPAIQ+ AL+ G+VP+EWS WE E Q WL ++A +K +L+ W+ KG LL P+DLS++ P TFLNA+RQQ ART CS+
Sbjct: 1745 GSKDNKVVTPVEAFVAMENAAATDLAIHVNNGLQSLKKVIYGTGLLTPAIQMIAAALLVGQVPAEWSNRWEASEVVQVWLRSLALRKRALNEWKEDCAKGTLLSRPLDLSDVLQPGTFLNALRQQAARTLKCSM 1878
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A418EVD1_9STRA (Uncharacterized protein n=16 Tax=Aphanomyces TaxID=100860 RepID=A0A418EVD1_9STRA) HSP 1 Score: 136 bits (342), Expect = 4.000e-34 Identity = 65/125 (52.00%), Postives = 85/125 (68.00%), Query Frame = 1
Query: 97 PVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
PV +FV MEN AA++L V SL ++KKV+YGT LLTPAIQ AL+ G+VPS+WS WE E Q WL ++A +K +L+ W+ KG LL P+DLS++ P TFLNA+RQQ AR CS+
Sbjct: 4029 PVEAFVAMENAAATDLASSVNQSLQSLKKVIYGTGLLTPAIQTIAAALLVGQVPSDWSNRWEASEVVQVWLRSLALRKRALNEWKEDCAKGTLLSRPLDLSDVLQPGTFLNALRQQAARALKCSM 4153
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A662Y312_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y312_9STRA) HSP 1 Score: 132 bits (332), Expect = 6.000e-34 Identity = 64/127 (50.39%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 91 LQPVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
++P +FV +ENE A +L + V SL +KK++YGT LLTPAIQ AL+ G VP EW+ WEG E+ WL +A +K +LS W+ AA G LL H +DLS L +P TFLNA+RQQ+AR CS+
Sbjct: 175 MEPADAFVALENEYALDLAQQVNGSLQDLKKLLYGTGLLTPAIQTVAKALLKGAVPVEWAAQWEGSESVATWLRGLALRKRALSEWQEAAASGKLLSHGLDLSELLHPGTFLNALRQQSARKQKCSM 301
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A7S2BLU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLU9_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.270e-33 Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 1
Query: 97 PVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGD---LLDHPIDLSNLFNPNTFLNAVRQQTAR 453
PV F+++EN+ A+ LC V L A+++V+YGTALLTPAIQ G +L+ G VP+ W + WEGPET Q WLA++ +K +L W + A KG +LD +DLS+LF+P TFLNA+RQQ+AR
Sbjct: 335 PVNQFIILENDMATSLCAYVDGCLSALRQVIYGTALLTPAIQTIGASLLTGSVPAAWDKRWEGPETIQQWLASLIQKSTALRGWVSRAEKGGRNGVLDGELDLSDLFHPGTFLNALRQQSAR 456
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Match: A0A2P4Y727_9STRA (Dynein heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y727_9STRA) HSP 1 Score: 132 bits (331), Expect = 4.390e-33 Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = 1
Query: 76 KEPSGLQPVMSFVVMENEAASELCRMVTSSLGAVKKVVYGTALLTPAIQVAGGALIAGKVPSEWSRLWEGPETPQAWLAAMARKKASLSRWETAATKGDLLDHPIDLSNLFNPNTFLNAVRQQTARTSGCSV 471
K + P +FV +EN+ A +L + V SSL A+KKV+YGT LLTPAIQ AL+ G VPSEW+ WEG E WL +A +K +LS W+ A G LL +DLS L +P TFLNA+RQQ+AR CS+
Sbjct: 310 KNVQAMSPADAFVALENDYALDLTQQVNSSLQALKKVIYGTGLLTPAIQTVAKALLKGVVPSEWATQWEGNENVGTWLRGLAMRKRALSEWQEAVGTGQLLTKGLDLSELLHPGTFLNALRQQSAREQKCSM 441 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig242.6550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig242.6550.1 >prot_H-paniculata_contig242.6550.1 ID=prot_H-paniculata_contig242.6550.1|Name=mRNA_H-paniculata_contig242.6550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp MGLHTKSEAGQAGSRARRLSVGPGTKEPSGLQPVMSFVVMENEAASELCRback to top mRNA from alignment at H-paniculata_contig242:1070..2855+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig242.6550.1 ID=mRNA_H-paniculata_contig242.6550.1|Name=mRNA_H-paniculata_contig242.6550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1786bp|location=Sequence derived from alignment at H-paniculata_contig242:1070..2855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig242:1070..2855+ >mRNA_H-paniculata_contig242.6550.1 ID=mRNA_H-paniculata_contig242.6550.1|Name=mRNA_H-paniculata_contig242.6550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig242:1070..2855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |