mRNA_H-paniculata_contig24175.6545.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24175.6545.1
Unique NamemRNA_H-paniculata_contig24175.6545.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24175.6545.1 vs. uniprot
Match: D8LEK5_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK5_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.160e-19
Identity = 58/101 (57.43%), Postives = 64/101 (63.37%), Query Frame = 1 
Query:    1 DGLFEFLTSLTAASGHLAPPGHTGSLLGEYNRRFRLADALDQSEALTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXSATSRASLGPERTEYLAGLLRGLPV 303
            DGLF F+TS+TAASGHLAP G+ GSLLGEYNRRFRLADALDQ++AL        XXXXX                        LGPERTEYL G+LR LPV
Sbjct:  258 DGLFSFVTSVTAASGHLAPTGYAGSLLGEYNRRFRLADALDQAQALGTQPIPPHXXXXXSEKQRTPRVGLAPGLV--------LGPERTEYLTGVLRALPV 350
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BLAST of mRNA_H-paniculata_contig24175.6545.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.250e-18
Identity = 52/111 (46.85%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:    1 DGLFEFLTSLTAASGHLAPPGHTGSLLGEYNRRFRLADALDQSEALTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXSATSRASLGPERTEYLAGLLRGLPVVSDSAVASSE 333
            DGLF F+TS+TAASGHLAP G+ G+LLGEYNR F LADALDQ++AL                                +  A LGPERTEYL G+LR LPV  +     +E
Sbjct:  198 DGLFSFVTSVTAASGHLAPTGYAGALLGEYNRCFHLADALDQAQALGTQPIPPQSPSEKQRTPRV-----------GLSPGAVLGPERTEYLTGVLRALPVSEEGVSKEAE 297
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24175.6545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEK5_ECTSI1.160e-1957.43Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6J2_9PHAE2.250e-1846.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24175contigH-paniculata_contig24175:706..1137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.1552045-CDS-H-paniculata_contig24175:705..11371622929696.1552045-CDS-H-paniculata_contig24175:705..1137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24175 706..1137 +
1691480970.9008-CDS-H-paniculata_contig24175:705..11371691480970.9008-CDS-H-paniculata_contig24175:705..1137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24175 706..1137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24175.6545.1prot_H-paniculata_contig24175.6545.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24175 706..1137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24175.6545.1

>prot_H-paniculata_contig24175.6545.1 ID=prot_H-paniculata_contig24175.6545.1|Name=mRNA_H-paniculata_contig24175.6545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
DGLFEFLTSLTAASGHLAPPGHTGSLLGEYNRRFRLADALDQSEALTAAA
ATATATTTTTTTTTTKSSSSPPRPPPSATSRASLGPERTEYLAGLLRGLP
VVSDSAVASSEKEAAARAAAAEEALSAALEKGGRARAGSGGGSG
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mRNA from alignment at H-paniculata_contig24175:706..1137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24175.6545.1 ID=mRNA_H-paniculata_contig24175.6545.1|Name=mRNA_H-paniculata_contig24175.6545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig24175:706..1137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGACTGTTCGAATTCCTCACCTCCCTCACGGCGGCCTCAGGACACCT
CGCGCCTCCGGGGCACACAGGCTCTCTTCTCGGCGAGTACAATCGACGAT
TCAGATTGGCCGATGCCCTTGACCAATCAGAGGCCCTTACCGCAGCAGCA
GCAACAGCAACAGCAACAACAACAACAACAACAACAACAACAACAAAATC
GTCATCGTCCCCCCCACGACCACCACCATCGGCAACCTCGCGGGCCTCCC
TAGGCCCGGAGCGCACCGAATATCTGGCCGGATTATTGCGAGGATTGCCT
GTGGTATCGGATTCCGCCGTGGCCTCGTCGGAAAAAGAGGCGGCGGCGCG
CGCTGCGGCTGCAGAGGAGGCACTATCCGCTGCCCTTGAAAAGGGGGGGC
GTGCCCGGGCTGGTTCAGGGGGGGGAAGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig24175:706..1137+

>mRNA_H-paniculata_contig24175.6545.1 ID=mRNA_H-paniculata_contig24175.6545.1|Name=mRNA_H-paniculata_contig24175.6545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig24175:706..1137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGGACTGTTCGAATTCCTCACCTCCCTCACGGCGGCCTCAGGACACCT
CGCGCCTCCGGGGCACACAGGCTCTCTTCTCGGCGAGTACAATCGACGAT
TCAGATTGGCCGATGCCCTTGACCAATCAGAGGCCCTTACCGCAGCAGCA
GCAACAGCAACAGCAACAACAACAACAACAACAACAACAACAACAAAATC
GTCATCGTCCCCCCCACGACCACCACCATCGGCAACCTCGCGGGCCTCCC
TAGGCCCGGAGCGCACCGAATATCTGGCCGGATTATTGCGAGGATTGCCT
GTGGTATCGGATTCCGCCGTGGCCTCGTCGGAAAAAGAGGCGGCGGCGCG
CGCTGCGGCTGCAGAGGAGGCACTATCCGCTGCCCTTGAAAAGGGGGGGC
GTGCCCGGGCTGGTTCAGGGGGGGGAAGCGGGGATGGACTGTTCGAATTC
CTCACCTCCCTCACGGCGGCCTCAGGACACCTCGCGCCTCCGGGGCACAC
AGGCTCTCTTCTCGGCGAGTACAATCGACGATTCAGATTGGCCGATGCCC
TTGACCAATCAGAGGCCCTTACCGCAGCAGCAGCAACAGCAACAGCAACA
ACAACAACAACAACAACAACAACAACAAAATCGTCATCGTCCCCCCCACG
ACCACCACCATCGGCAACCTCGCGGGCCTCCCTAGGCCCGGAGCGCACCG
AATATCTGGCCGGATTATTGCGAGGATTGCCTGTGGTATCGGATTCCGCC
GTGGCCTCGTCGGAAAAAGAGGCGGCGGCGCGCGCTGCGGCTGCAGAGGA
GGCACTATCCGCTGCCCTTGAAAAGGGGGGGCGTGCCCGGGCTGGTTCAG
GGGGGGGAAGCGGG
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