mRNA_H-paniculata_contig2417.6544.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2417.6544.1
Unique NamemRNA_H-paniculata_contig2417.6544.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2417.6544.1 vs. uniprot
Match: UPI000478BDE0 (DUF11 domain-containing protein n=1 Tax=Haematomicrobium sanguinis TaxID=479106 RepID=UPI000478BDE0)

HSP 1 Score: 57.4 bits (137), Expect = 1.850e-7
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 ILQEHIDAGVIEGTVTMTATAPFDTPVEASSAS-STELARLSVLNVTVTTILI-DGDGEAGSIPGDQIWLKINVTNEGTVSLSSLAITDPLL 270
            I Q+ +DAG ++ T T T T P     + +  + +TEL +   L +  +   + D +GE G  PGD I     VTN GTV+++S+AITDPLL
Sbjct: 1763 ITQDDMDAGTVDNTATATVTGPAGVTADTNEDTVTTELTQSGSLGLDKSASAVQDSNGETGINPGDTISYTFVVTNLGTVTVNSIAITDPLL 1854
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BLAST of mRNA_H-paniculata_contig2417.6544.1 vs. uniprot
Match: A0A7K0X1G8_9ACTN (DUF11 domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K0X1G8_9ACTN)

HSP 1 Score: 53.5 bits (127), Expect = 4.150e-6
Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 1 
Query:    1 ILQEHIDAGVIEGTVTMTATAPFDTPVEASSASSTELARLSVLNVTVTTILIDGDGEAGSIPGDQIWLKINVTNEGTVSLSSLAITDPLL 270
            + Q  +DAGV+  T T T  AP    V +S  ++T +A L  + +T T   ID     G   GD +     V N GTV L+S+ ++DPLL
Sbjct:  972 LTQGDVDAGVVVNTATATGKAPGGVDVTSSDTTTTTIAPLPAVRLTKTASAIDDVDGNGPDAGDTLTYTFVVHNTGTVKLTSVTVSDPLL 1061
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BLAST of mRNA_H-paniculata_contig2417.6544.1 vs. uniprot
Match: A0A7Y9YHL7_9ACTN (Putative repeat protein (TIGR01451 family) n=3 Tax=Nocardioides TaxID=1839 RepID=A0A7Y9YHL7_9ACTN)

HSP 1 Score: 53.1 bits (126), Expect = 5.690e-6
Identity = 33/88 (37.50%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    7 QEHIDAGVIEGTVTMTATAPFDTPVEASSASSTELARLSVLNVTVTTILIDGDGEAGSIPGDQIWLKINVTNEGTVSLSSLAITDPLL 270
            Q  +DAG  E T T T TAP    V +S +++T +A +  + +T+T   ID     G   GD I     V N GTV+L  + + DPLL
Sbjct:  915 QADVDAGKRENTATATGTAPGGAKVTSSDSTTTTIAAVPAIQLTLTGSAIDDVDGNGHDAGDTITYTYKVKNTGTVALDPVTVHDPLL 1002
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BLAST of mRNA_H-paniculata_contig2417.6544.1 vs. uniprot
Match: A0A5Q2W2B8_9CELL (DUF11 domain-containing protein n=2 Tax=Pseudactinotalea sp. HY158 TaxID=2654547 RepID=A0A5Q2W2B8_9CELL)

HSP 1 Score: 51.6 bits (122), Expect = 1.990e-5
Identity = 30/89 (33.71%), Postives = 46/89 (51.69%), Query Frame = 1 
Query:    1 ILQEHIDAGVIEGTVTMTATAPFDTPVEASSASSTELARLSVLNVTVTTILIDGDGEAGSIPGDQIWLKINVTNEGTVSLSSLAITDPL 267
            + QEH+DAG I+ T T+  T P    V+      T+ A + +      T++  G+   G+  GD +      TN G V+L+ +AITDPL
Sbjct:  467 VTQEHVDAGSIDNTATVVGTPPSGPDVD-----DTDTASVPLDQQPAITLIKSGETTDGNGVGDVVTYSFTATNAGNVTLTDVAITDPL 550
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2417.6544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI000478BDE01.850e-739.13DUF11 domain-containing protein n=1 Tax=Haematomic... [more]
A0A7K0X1G8_9ACTN4.150e-636.67DUF11 domain-containing protein n=2 Tax=root TaxID... [more]
A0A7Y9YHL7_9ACTN5.690e-637.50Putative repeat protein (TIGR01451 family) n=3 Tax... [more]
A0A5Q2W2B8_9CELL1.990e-533.71DUF11 domain-containing protein n=2 Tax=Pseudactin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2417contigH-paniculata_contig2417:19542..20155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue5.1e-07
Seed eggNOG ortholog1121020.JIAG01000016_gene644
KEGG koko:K01417
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function DUF11
EggNOG OGs1WC6E@1268,2I8F1@201174,COG1361@1,COG1361@2,COG3291@1,COG3291@2,COG4719@1,COG4719@2
COG Functional cat.M
Best tax levelMicrococcaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.0966246-CDS-H-paniculata_contig2417:19541..197851622929696.0966246-CDS-H-paniculata_contig2417:19541..19785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 19542..19785 -
1691480970.8764725-CDS-H-paniculata_contig2417:19541..197851691480970.8764725-CDS-H-paniculata_contig2417:19541..19785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 19542..19785 -
1622929696.115009-CDS-H-paniculata_contig2417:20108..201551622929696.115009-CDS-H-paniculata_contig2417:20108..20155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 20109..20155 -
1691480970.8927221-CDS-H-paniculata_contig2417:20108..201551691480970.8927221-CDS-H-paniculata_contig2417:20108..20155Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 20109..20155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2417.6544.1prot_H-paniculata_contig2417.6544.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2417 19542..20155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2417.6544.1

>prot_H-paniculata_contig2417.6544.1 ID=prot_H-paniculata_contig2417.6544.1|Name=mRNA_H-paniculata_contig2417.6544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
ILQEHIDAGVIEGTVTMTATAPFDTPVEASSASSTELARLSVLNVTVTTI
LIDGDGEAGSIPGDQIWLKINVTNEGTVSLSSLAITDPLLSTLQAR*
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mRNA from alignment at H-paniculata_contig2417:19542..20155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2417.6544.1 ID=mRNA_H-paniculata_contig2417.6544.1|Name=mRNA_H-paniculata_contig2417.6544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=614bp|location=Sequence derived from alignment at H-paniculata_contig2417:19542..20155- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCTCCAAGAACATATCGACGCAGGAGTTATCGAGGGTACCGTCACGTA
AGTCGACCGCGCTGGGGTATCGTTAGTGTTCCAATTGAATGTATATAATA
TGCCATCATGTGGCACGCACATGTTGTGTAGGTATGTCTCGGTGCTGCTT
TTCCCCACCCGGTCTAATCAAACGATCTATAACTCGAAGCATTTACACTC
TTGTGGTATATCAAACATACCTCGGTGCCAGCAGGATGAGAGTTCCGAAT
CACCTTTTGGTAGCTGAAATACTTCAGAAATTTAAATGAAAGTTGAACAT
GAGGACTCTCCTTCCGCATGAATAATCTAGACCTATGAACTACGTCGAAA
TCTTCTGAACCCTTCTTCAGGATGACCGCTACCGCCCCTTTTGACACACC
GGTGGAGGCGTCGAGCGCTTCCTCTACAGAACTTGCCCGCCTCTCGGTAC
TCAACGTGACAGTCACTACTATTCTCATTGACGGCGATGGGGAAGCTGGA
TCGATCCCCGGGGATCAGATTTGGCTCAAGATAAATGTCACCAATGAAGG
CACCGTTTCCCTATCATCCCTCGCCATCACAGATCCGCTGTTGTCTACCC
TTCAGGCCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2417:19542..20155-

>mRNA_H-paniculata_contig2417.6544.1 ID=mRNA_H-paniculata_contig2417.6544.1|Name=mRNA_H-paniculata_contig2417.6544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig2417:19542..20155- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCTCCAAGAACATATCGACGCAGGAGTTATCGAGGGTACCGTCACATT
CTCCAAGAACATATCGACGCAGGAGTTATCGAGGGTACCGTCACGATGAC
CGCTACCGCCCCTTTTGACACACCGGTGGAGGCGTCGAGCGCTTCCTCTA
CAGAACTTGCCCGCCTCTCGGTACTCAACGTGACAGTCACTACTATTCTC
ATTGACGGCGATGGGGAAGCTGGATCGATCCCCGGGGATCAGATTTGGCT
CAAGATAAATGTCACCAATGAAGGCACCGTTTCCCTATCATCCCTCGCCA
TCACAGATCCGCTGTTGTCTACCCTTCAGGCCAGGTAAGATGACCGCTAC
CGCCCCTTTTGACACACCGGTGGAGGCGTCGAGCGCTTCCTCTACAGAAC
TTGCCCGCCTCTCGGTACTCAACGTGACAGTCACTACTATTCTCATTGAC
GGCGATGGGGAAGCTGGATCGATCCCCGGGGATCAGATTTGGCTCAAGAT
AAATGTCACCAATGAAGGCACCGTTTCCCTATCATCCCTCGCCATCACAG
ATCCGCTGTTGTCTACCCTTCAGGCCAGGTAA
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