mRNA_H-paniculata_contig2417.6543.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2417.6543.1
Unique NamemRNA_H-paniculata_contig2417.6543.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2417.6543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2417contigH-paniculata_contig2417:6980..7841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size417
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2417.6543.1prot_H-paniculata_contig2417.6543.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2417 6981..7841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929696.013922-CDS-H-paniculata_contig2417:6980..70811622929696.013922-CDS-H-paniculata_contig2417:6980..7081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 6981..7081 -
1691480970.8469577-CDS-H-paniculata_contig2417:6980..70811691480970.8469577-CDS-H-paniculata_contig2417:6980..7081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 6981..7081 -
1622929696.0290005-CDS-H-paniculata_contig2417:7316..75991622929696.0290005-CDS-H-paniculata_contig2417:7316..7599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 7317..7599 -
1691480970.8567872-CDS-H-paniculata_contig2417:7316..75991691480970.8567872-CDS-H-paniculata_contig2417:7316..7599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 7317..7599 -
1622929696.046388-CDS-H-paniculata_contig2417:7811..78411622929696.046388-CDS-H-paniculata_contig2417:7811..7841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 7812..7841 -
1691480970.8664849-CDS-H-paniculata_contig2417:7811..78411691480970.8664849-CDS-H-paniculata_contig2417:7811..7841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2417 7812..7841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2417.6543.1

>prot_H-paniculata_contig2417.6543.1 ID=prot_H-paniculata_contig2417.6543.1|Name=mRNA_H-paniculata_contig2417.6543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
IARDDINLGECTTEVNVTATGPDGTKATSIDSHYQVLPSRHGISLTLEGG
NAASSDINGDGKSSDGDVVTFTLNVTNNGSVDLEDVEVQAAGLDELNCQY
FGLSGQGQVLNGATNNIDQDIFPSGETYTCTGLYTLTQ
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mRNA from alignment at H-paniculata_contig2417:6980..7841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2417.6543.1 ID=mRNA_H-paniculata_contig2417.6543.1|Name=mRNA_H-paniculata_contig2417.6543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=862bp|location=Sequence derived from alignment at H-paniculata_contig2417:6980..7841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGCCCGTGATGATATCAACCTCGGCGAGGTGAGAGCGTCATTAGCCAA
TGCCATGAAAAAGCGGTCGAAGTAGTCTTTCATCGCACACGGCTCAGCAA
GGAATGATCAAATCGCTAGTTTCACCCGGAAACATGTTTGCAACGTGCTC
TCGATGAATATTGGGATACACTGTCAAGTCAATATTCGCACAACTGACAA
CACCGGAATCCTCACCCTTTCATTTGGTGACGGTAAAAACAGTGCACAAC
GGAGGTTAATGTGACAGCTACCGGTCCTGACGGAACCAAAGCTACATCGA
TCGATTCTCACTATCAAGTTCTCCCCTCGAGGCATGGCATCTCATTGACA
CTAGAGGGAGGAAATGCTGCCTCTTCTGACATAAATGGGGATGGAAAATC
ATCAGATGGAGACGTTGTTACCTTTACGCTCAACGTAACCAATAACGGGA
GCGTGGATCTTGAGGACGTCGAGGTGCAGGCGGCAGGACTGGATGAGCTT
AATTGCCAGTACTTCGGCCTTTCAGGTGCCATTGAAGGTTGTGAGTCATT
CGTTGCCTGCTATTGTACCCAACCTGGTTGCACTGGCTGTGCTGTTCGTT
TTAAAAATCTAAAAAAGTCACGGTTACCCACTTGTTAGAGGGCAAAGTGC
TAGGGTAGCACACAGCTTCATTCGCTAGATGCTGTCGGTCAAGTGGGAGC
ACGAACCTGACACCCCCCTCCCTGCATTTTAAAACTGCCGCTGCGCTGGT
GTCTTGACAGGTCAAGGACAAGTACTGAATGGGGCCACAAATAATATTGA
CCAGGACATATTCCCCTCGGGCGAAACCTACACGTGCACGGGATTGTACA
CGCTTACTCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2417:6980..7841-

>mRNA_H-paniculata_contig2417.6543.1 ID=mRNA_H-paniculata_contig2417.6543.1|Name=mRNA_H-paniculata_contig2417.6543.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig2417:6980..7841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTGCCCGTGATGATATCAACCTCGGCGAGATTGCCCGTGATGATATCAA
CCTCGGCGAGTGCACAACGGAGGTTAATGTGACAGCTACCGGTCCTGACG
GAACCAAAGCTACATCGATCGATTCTCACTATCAAGTTCTCCCCTCGAGG
CATGGCATCTCATTGACACTAGAGGGAGGAAATGCTGCCTCTTCTGACAT
AAATGGGGATGGAAAATCATCAGATGGAGACGTTGTTACCTTTACGCTCA
ACGTAACCAATAACGGGAGCGTGGATCTTGAGGACGTCGAGGTGCAGGCG
GCAGGACTGGATGAGCTTAATTGCCAGTACTTCGGCCTTTCAGTGCACAA
CGGAGGTTAATGTGACAGCTACCGGTCCTGACGGAACCAAAGCTACATCG
ATCGATTCTCACTATCAAGTTCTCCCCTCGAGGCATGGCATCTCATTGAC
ACTAGAGGGAGGAAATGCTGCCTCTTCTGACATAAATGGGGATGGAAAAT
CATCAGATGGAGACGTTGTTACCTTTACGCTCAACGTAACCAATAACGGG
AGCGTGGATCTTGAGGACGTCGAGGTGCAGGCGGCAGGACTGGATGAGCT
TAATTGCCAGTACTTCGGCCTTTCAGGTCAAGGACAAGTACTGAATGGGG
CCACAAATAATATTGACCAGGACATATTCCCCTCGGGCGAAACCTACACG
TGCACGGGATTGTACACGCTTACTCAGGTCAAGGACAAGTACTGAATGGG
GCCACAAATAATATTGACCAGGACATATTCCCCTCGGGCGAAACCTACAC
GTGCACGGGATTGTACACGCTTACTCAG
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