mRNA_H-paniculata_contig24169.6542.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24169.6542.1
Unique NamemRNA_H-paniculata_contig24169.6542.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24169.6542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24169contigH-paniculata_contig24169:1359..1906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue2.1e-09
Seed eggNOG ortholog2880.D8LTK1
Preferred nameMCA5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGsKOG1546@1,KOG1546@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size190
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.9072213-CDS-H-paniculata_contig24169:1358..14061622929695.9072213-CDS-H-paniculata_contig24169:1358..1406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24169 1359..1406 +
1691480970.8181722-CDS-H-paniculata_contig24169:1358..14061691480970.8181722-CDS-H-paniculata_contig24169:1358..1406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24169 1359..1406 +
1622929695.9260776-CDS-H-paniculata_contig24169:1764..19051622929695.9260776-CDS-H-paniculata_contig24169:1764..1905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24169 1765..1905 +
1691480970.8356478-CDS-H-paniculata_contig24169:1764..19051691480970.8356478-CDS-H-paniculata_contig24169:1764..1905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24169 1765..1905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24169.6542.1prot_H-paniculata_contig24169.6542.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24169 1359..1905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24169.6542.1

>prot_H-paniculata_contig24169.6542.1 ID=prot_H-paniculata_contig24169.6542.1|Name=mRNA_H-paniculata_contig24169.6542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
RALVDEDGTRHIWILLENSDLMYTFDALDDDKEFLEPVNILPSTKEFDCH
IDTAGNIHVFSVD
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mRNA from alignment at H-paniculata_contig24169:1359..1906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24169.6542.1 ID=mRNA_H-paniculata_contig24169.6542.1|Name=mRNA_H-paniculata_contig24169.6542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at H-paniculata_contig24169:1359..1906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGCCCTGGTGGACGAGGACGGCACCAGGCATATCTGGATTCTGCTCGT
AAGGCCTCCAAACGGACAACAACAGAGCTCGATACGCTGCGTGGTAGACC
TACTCTTCTTAGGCAGCGTTTTTCACTCGTCTATTGGAGTTGTGTTTTAT
CACTCAAGTCTCATTTCTGTATGGGTAACAATGAAATACTCTACATTAGT
TGTCGGGCGAAAACTCGAATAAGCCTGGTATAAAATGGTTCACCTGGGCG
ACTGTTGAGCAGGCGTGCTCCGGTCCAAACGCGTGAATAACCTTTCTGGA
CCAGCCCACATGATGGAATTGATTCATTCCATTTCCCCTGTCGAAAGTGG
TGTGATTCCACAATCCCGAGGCTCACACGCGATTATTGTGTCGCGTACCT
CCGCAGGAGAACAGCGACTTGATGTACACGTTCGACGCTCTCGACGACGA
CAAAGAATTTCTCGAGCCTGTCAACATCCTCCCCAGCACAAAAGAGTTCG
ACTGTCACATCGACACTGCCGGGAACATCCACGTCTTCAGTGTGGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig24169:1359..1906+

>mRNA_H-paniculata_contig24169.6542.1 ID=mRNA_H-paniculata_contig24169.6542.1|Name=mRNA_H-paniculata_contig24169.6542.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig24169:1359..1906+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGCCCTGGTGGACGAGGACGGCACCAGGCATATCTGGATTCTGCTCCG
CGCCCTGGTGGACGAGGACGGCACCAGGCATATCTGGATTCTGCTCGAGA
ACAGCGACTTGATGTACACGTTCGACGCTCTCGACGACGACAAAGAATTT
CTCGAGCCTGTCAACATCCTCCCCAGCACAAAAGAGTTCGACTGTCACAT
CGACACTGCCGGGAACATCCACGTCTTCAGTGTGGACGAGAACAGCGACT
TGATGTACACGTTCGACGCTCTCGACGACGACAAAGAATTTCTCGAGCCT
GTCAACATCCTCCCCAGCACAAAAGAGTTCGACTGTCACATCGACACTGC
CGGGAACATCCACGTCTTCAGTGTGGAC
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