mRNA_H-paniculata_contig24166.6541.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24166.6541.1
Unique NamemRNA_H-paniculata_contig24166.6541.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24166.6541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24166contigH-paniculata_contig24166:1403..2628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24166.6541.1prot_H-paniculata_contig24166.6541.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24166 1403..2509 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.8336015-CDS-H-paniculata_contig24166:1402..16221622929695.8336015-CDS-H-paniculata_contig24166:1402..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24166 1403..1622 -
1691480970.7807896-CDS-H-paniculata_contig24166:1402..16221691480970.7807896-CDS-H-paniculata_contig24166:1402..1622Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24166 1403..1622 -
1622929695.8574886-CDS-H-paniculata_contig24166:2414..25091622929695.8574886-CDS-H-paniculata_contig24166:2414..2509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24166 2415..2509 -
1691480970.7937574-CDS-H-paniculata_contig24166:2414..25091691480970.7937574-CDS-H-paniculata_contig24166:2414..2509Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24166 2415..2509 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.8707528-UTR-H-paniculata_contig24166:2509..26281622929695.8707528-UTR-H-paniculata_contig24166:2509..2628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24166 2510..2628 -
1691480970.8038778-UTR-H-paniculata_contig24166:2509..26281691480970.8038778-UTR-H-paniculata_contig24166:2509..2628Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24166 2510..2628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24166.6541.1

>prot_H-paniculata_contig24166.6541.1 ID=prot_H-paniculata_contig24166.6541.1|Name=mRNA_H-paniculata_contig24166.6541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MDPTIHEVQYCPSERRPLLEVGLVPLCRTMDRPHLLLGASERGLMKVRDS
IIEQGRLRQFAPSVVIPRASMGDDGSVPNLAEGQHVRVLDGNHRVMVCKK
LFGED
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mRNA from alignment at H-paniculata_contig24166:1403..2628-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24166.6541.1 ID=mRNA_H-paniculata_contig24166.6541.1|Name=mRNA_H-paniculata_contig24166.6541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1226bp|location=Sequence derived from alignment at H-paniculata_contig24166:1403..2628- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGTCGCCTCGACAACCTCTGAAAAATCTGCGCCAAAACTGCCTTGTCC
GTAGGTGGCTGCGTCCAGGGTAGCAGCATTGGCACGGGTCGCTTTATTAA
CAGGGCTGTACCAGTGGACATGGACCCCACCATTCACGAAGTCCAGTACT
GCCCATCAGAAAGGAGACCTCTTCTTGAAGTTGGCCTCGTTCCTCTGTGT
CGTACAATGGACAGGCAAGTGTTTGTTGACTTCTGGTGAAGATGTTCTTG
CCACGCACACCTACAGCAAACCTTCGCGTCAGCGAACGATATATTGATGG
AGAAGTGCAAACAAAGCCATTATCATGGCAATAATGTCAAAAAGGAGTTG
TACACAAGTTGCCGTGCAACAAATGATCTGGCTCTCGCTTGTATAAAACA
TTTGGCGCACAGTCAATAGTGTCAATCATGTCTATGGCATTAACTAATAA
TTTATTATTGCAGAATTTGAGAATTTGAGCTGTTTGTACGGTGAGCTACA
GAAGAGATAAACTGTAGACCTACGAGCATGCAACAAAAATGAGGTTATAC
ATAAAGTACGTTGTTAGCACCACGTAACAATGCATTGGAAACTCACAAAT
AATTGAGTACTGCTACAGCGTGCAGTTTAACTTCAATGCATGTCAACGGA
ACTTGGCACATTCAATACCAATTGGGGACGTTGTCAGTGTCAAGTACAAC
GTCACTGGTATTATACAAATTTTGATGTGGGTGTGCCCAACCATCATGAA
GACGTAGTCGAGAGGCTTGTTGTCGCCCTGGGCAATTATGCTTTTCCGAA
TATTGTCCTCAATCACCTGTCGATCTGCCTTGACTAGCTGCAAAGACAAA
AGAACGAAGAAGAAGAAGAGGAGACAGGGTGGTATTGTTAAAATCGCATT
ACACAACAGCATTGAGCGAGTCACCAACAATGTATCACCAGAATCGAATG
GAACAGGTATAAGAAACACAAACAAGGCAAAAAACGCTCGTTGACTTCTC
CCACAGGCCACACTTACTCTTAGGTGCGTCGGAGAGAGGCCTCATGAAAG
TCAGAGACTCCATAATCGAGCAGGGACGGCTGCGGCAGTTCGCTCCTTCC
GTGGTCATCCCACGTGCAAGCATGGGCGATGACGGCAGCGTACCCAACCT
TGCGGAAGGACAGCACGTTCGCGTGTTGGACGGCAATCATCGTGTCATGG
TCTGCAAGAAGCTGTTTGGAGAGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig24166:1403..2628-

>mRNA_H-paniculata_contig24166.6541.1 ID=mRNA_H-paniculata_contig24166.6541.1|Name=mRNA_H-paniculata_contig24166.6541.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig24166:1403..2628- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCCCACCATTCACGAAGTCCAGTACTGCCCATCAGAAAGGAGACC
TCTTCTTGAAGTTGGCCTCGTTCCTCTGTGTCGTACAATGGACAGATGGA
CCCCACCATTCACGAAGTCCAGTACTGCCCATCAGAAAGGAGACCTCTTC
TTGAAGTTGGCCTCGTTCCTCTGTGTCGTACAATGGACAGGCCACACTTA
CTCTTAGGTGCGTCGGAGAGAGGCCTCATGAAAGTCAGAGACTCCATAAT
CGAGCAGGGACGGCTGCGGCAGTTCGCTCCTTCCGTGGTCATCCCACGTG
CAAGCATGGGCGATGACGGCAGCGTACCCAACCTTGCGGAAGGACAGCAC
GTTCGCGTGTTGGACGGCAATCATCGTGTCATGGTCTGCAAGAAGCTGTT
TGGAGAGGATGCCACACTTACTCTTAGGTGCGTCGGAGAGAGGCCTCATG
AAAGTCAGAGACTCCATAATCGAGCAGGGACGGCTGCGGCAGTTCGCTCC
TTCCGTGGTCATCCCACGTGCAAGCATGGGCGATGACGGCAGCGTACCCA
ACCTTGCGGAAGGACAGCACGTTCGCGTGTTGGACGGCAATCATCGTGTC
ATGGTCTGCAAGAAGCTGTTTGGAGAGGAT
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