mRNA_H-paniculata_contig2412.6530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2412.6530.1
Unique NamemRNA_H-paniculata_contig2412.6530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2412.6530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2412contigH-paniculata_contig2412:5052..9186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size504
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2412.6530.1prot_H-paniculata_contig2412.6530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2412 5123..5503 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.2169642-UTR-H-paniculata_contig2412:5051..51221622929694.2169642-UTR-H-paniculata_contig2412:5051..5122Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2412 5052..5122 -
1691480970.0948148-UTR-H-paniculata_contig2412:5051..51221691480970.0948148-UTR-H-paniculata_contig2412:5051..5122Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2412 5052..5122 -
1622929694.2495623-UTR-H-paniculata_contig2412:5503..55281622929694.2495623-UTR-H-paniculata_contig2412:5503..5528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2412 5504..5528 -
1691480970.1208868-UTR-H-paniculata_contig2412:5503..55281691480970.1208868-UTR-H-paniculata_contig2412:5503..5528Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2412 5504..5528 -
1622929694.2623942-UTR-H-paniculata_contig2412:9159..91861622929694.2623942-UTR-H-paniculata_contig2412:9159..9186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2412 9160..9186 -
1691480970.1362197-UTR-H-paniculata_contig2412:9159..91861691480970.1362197-UTR-H-paniculata_contig2412:9159..9186Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2412 9160..9186 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.2317853-CDS-H-paniculata_contig2412:5122..55031622929694.2317853-CDS-H-paniculata_contig2412:5122..5503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2412 5123..5503 -
1691480970.107783-CDS-H-paniculata_contig2412:5122..55031691480970.107783-CDS-H-paniculata_contig2412:5122..5503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2412 5123..5503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2412.6530.1

>prot_H-paniculata_contig2412.6530.1 ID=prot_H-paniculata_contig2412.6530.1|Name=mRNA_H-paniculata_contig2412.6530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MSGRRKTFARRQSSHEKTSCEEYVRTFLRFKPLERRPKLHVVKRSRGKGS
PAATRCSWSTATTTIAVERRAAGNPVEALLVGRKPPTPNPLPPTTMSSTK
GTTATMNARIVWPKGTQPPSARSSDA*
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mRNA from alignment at H-paniculata_contig2412:5052..9186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2412.6530.1 ID=mRNA_H-paniculata_contig2412.6530.1|Name=mRNA_H-paniculata_contig2412.6530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4135bp|location=Sequence derived from alignment at H-paniculata_contig2412:5052..9186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCAAGCATTGCTACCGTGGATAGGGGTAAGTTAAGTATGGCATGTCGA
CTTGTGTGTCAGTGTTTTATTCTCCTGTACTGCCTGTGCCCATGATGAGT
ACATGTCTGATGTTTCGGATTTTCTGAATTTACACGTACTGCATCGTGTT
TCCGTATGGTGACCTGATTGTTTCGTAGGACGCTTTGGGTTGCGTGAATC
GGTAGGCTTCTTTCTGCAATGACACTAATATAGCTGCTGCGTGTGCAATT
GATGTAGGGGTTTAGCTGCCATTGCCCGACAACATGTCTCACTGTAGCGA
TCAGTTTTTGAATAAGAAAAGGACAAAGTAAAACTGGTTTCGTAACGAAT
ATATTTTCCCCTTTCCTATTCCGAAATGGCATGTGTACTATGCCCGTGGT
TGTTTAAGGTGTTGTGTCTCACTTCTTCTAGTTCTTGTCTCGAAATGAAA
TATAATTTCTGCTGATGGACAGTTGTCCGGCTCTTACAGCTCAAAAGCAA
TTTCTAGTTGTTGATCCATGTAAAACATGGGGTTACACAAATTTCAGGTT
CAAAACTTGGTTCTAAATTCACTTGCAAGATCGTTTGTATGTACAATATG
CAGTTTAGAACAGCTTCGTTAAAACTGATTGCATGGTGTTCTAACAGATC
TCCGATGTGAATTAGAATCTTTCCCTGAATTGAAGTAGTGCTGGATTTTT
TCCAGGTATATGATTTTGGATTTGATTGCGCATAAAACAGCATACCGACC
CCATCGGACCTTCAGGGTAGACCCTATTTCCAATATAATCCAGGGTCCTC
ATCTCAATTTTGGGTCCCTATTTCACCAATATGCTGTTATAAGTTGGTAC
GGTTCACTCGTCCGTCACTGATGCCCACCCATATTGCTTTTGCTTTTGCG
TTTTATGCTTTCCATTTACATAGTTCGGTTGTCAAAGTGGAAATAATACA
GTGCCGTCAGTAGTGTTTCCCCGAAATACTGCAAGACATTGTATGTTCCG
AAATTGAATAATTTTTTTATGATCGGTTTTTTTCTCGCGTGTTTTGATGT
GTTTTAGTGTCGGTGTATTTAGACGTGGATAATTAAAACGTAGAATTGGT
ACCTGTGAAGCGAAAACAACAGCTGCTATGGTGTAGACTGTAACTGCTAT
CAGATCAGGGTCACATAGTTTTCTCTGCGTAACATGAAGTGGTGAGTGAA
ATCGTTGTCATGCGTGGATGTATGTGTTTGAAGCGCTATCTGTACGGTGA
ATATTGTTTCAGGTTGAGCGTCTGGTACAACAGATGCATGTTTAGGTTAG
CTCTAATACGGAGTTACAGTAATCGTATGGTGTTTTCTCGGTGATGATTG
ATGAAGAGATAACGTCTTGTGTTTGCGCTGGTCGTTTGGAAAATAACACG
ATAAGTATTGAAATTGTTTACCTAATCTTTGGTACGTGTGAAGGATTTTG
GTACGAGGGCTAAACATATCACTACGGAATACGCAAATTTTTTTGTCGAT
TGAGGTAGCATCATGAATATTTGGTGTGAATCAAGACTGACCCGTTATCG
TTATTGTCCTCCCGGCTTTTCCCCGAGTTCCCCCATCAAGCCTTCGCTTT
TGCCGAGGTTTCGGCCTCCAACTATTCGCTTGCCTCAAGGTGCAGCCCTG
ATCGGGGGTATGTGCGATGCTGTTGGGATGATGGTGACCGAGGACCAATG
ACAAGACCCTGCATGTGCTGTGAAATTTTTCTTGTTTTTTTTTTGCTCTA
TTTTTCGGTTCTTCAGATTGGATTTTGCGTGAGTTTCCATCGTGTTTATT
ACGGTAAAGTGATCTTATTTCTTGAATTGAATTCAGTATACGGAGTGGCC
CCCAAGGATGACTTCGACTGGCTTACATTGGGATCGTGGAAATTTTTATT
CAAATATGCGTGGTTGGTAACTATTGGCTTTGGTTAACACGAAACTTGAA
AAGGTTGAGAATAGGAGAGTGCACCATCAAGTCTTTCGAGCTTTGAACTT
GAACTTAGGAATGCTTCAGCTTATGTCATGCTTTTGTTTTCCTGAGCCAA
TCTTGCTTTCTTAGGGGTGCTTTCTCTATTCTTGTTTTTCCCGAGTAAAC
ATTGCTTGTCTGGCTAAGCACTTTCCGGTACTTGCATACTTTGTTTTCTC
GAGTCAGTCTTGCTTTCTAGGGGAGTTAGTTTCCATGCTCTGTTTTCCCA
AGCAAATATTGCTTGTTCGGCGGAACCTTTTGCATTCCTGCTCATTTGCC
TCCCGAGTAACTTTGCTTGTTTAGGGAGGCGTTTTCGGTACTTCGTTGTT
TTCCCGGAGGAGTATTGTTTGGAGAGGCGTTTTCCCGACCGAATATATTT
CACTTGTTTAGGGTAGGATTCGGTCAGGTTGTACTTTCTCCCGAGTACTC
ATCATCTTCTGGTGTTATATATTTTGAGAGATCCTATATAAGAGGTCTGT
AGGCGTGAGTAGGACACCAAGCAGGCGGAAGTCATATCAATTCCCATGGA
TTGGACTTGCGATACTAATTCTAGAATTGATTCTCGCCTGACAACATATT
TTAATGTGTTGGATACAAATTGTGTATCCCAACCCAATTGTGCTAGTTAC
CCAGTACGGTTTCTTTGTTTTTCTCTTCCTGAGCGAGCATCTTCCTTATT
TCTAATATGAAAGAAAGGATCCGTGCGAAGCGGTGCTTTTTCGAGTCCTT
GGGCATTCCTGTTCGAAGGCACAGCACAAGTTTTTCAGTAATTTGTTGAA
TTGAAGTGTTTGCGCTGGATTCATCGTGGTTGTGATTTGTTGGGCAGTTG
AAATAAGTCAGCTGACTGCCTACGCTGTACGAGAACATACATGTTGTGGT
TCGCTCACTTGATTTGCTTTTGCTTCGGTCGGTGTTTAGAACGCGCTACG
TTGTATCGTTGCATTATTCAGGCTCTTCTCGGGAACACGAATATTTCTTC
GCGTTACGGGGATAAGTGGTTTGATATATTGATATTTTTTCCGTCCCTAG
CATATGGTGTGTCTCAGATGCGGATAACTATGGAGGCTGCCCGATATCAT
GGGGTAGGTTTCCCATTTGGATCCTTAGATTCGGGTACGGAGAATAGCCC
AACAATCGTAGGTTTGTATTGGATCGCGAAGAGCGCTATACGGAGATTGG
TAGTGTTTCGTTGTACTGAATTTTGTGTGGGTCATTATCTGATTCGGATT
CTGGACTATGACTGTCTGAGGTGTTGGCTCCAGCCGCAGCCTGGGTTTTG
AGAGGTGAAGTCCCTCCAGTCTGTCACTTAGATCTGCTTCTCTAAAAGGG
ACCTGTCATAAAGAAGCCATATAAAACCCTCTTTGTCCAGACATTGATAC
GGTTCAGGAGCCTATAAGTGTCGAATAAGACTCACAATGCAGCTTGGCAA
TATTTCTGCTCTGCCTTGAAGGGCACTGACTTTGACCTTATGTGCGGACT
GACGTCACCGCGAGAAGTGTAGGAAAGGCTGGAAGAGTGGCATATGCCAC
AAACTCAAGGGGGGAGGCAGGAATTACACGAACAGTTTACTGATTTCAAG
ATGACAGTACATGAGAATCCGGTCAACATACTGACAAGACTCGAGAAGCT
AGCTGAGTCACTGATTAAAAGTAGTATCATTATGCCTGAATTCTATGTCT
TTGCACAGTTTGCCTCCTTCCTCCTTCCCGAGTATGAGTGGCAGAAGGAA
GACCTTCGCCAGAAGACAAAGCTCTCATGAGAAGACATCCTGCGAGGAGT
ACGTGAGAACTTTTCTTCGATTCAAGCCGCTCGAAAGAAGGCCGAAGCTG
CACGTCGTGAAGAGGAGTAGGGGAAAAGGAAGTCCGGCGGCGACCAGGTG
TTCGTGGTCGACAGCAACAACAACAATTGCGGTCGAGCGCAGGGCCGCGG
GAAATCCCGTGGAGGCTTTGCTGGTCGGAAGAAAGCCCCCAACTCCAAAT
CCTCTACCACCCACCACCATGTCTTCGACAAAAGGTACGACAGCGACGAT
GAATGCACGAATTGTTTGGCCGAAGGGAACCCAACCACCATCTGCCCGAA
GCAGCGATGCGTAATAACAAGGCCTGCCCGAACGTCTCAACGGCGGTGAT
GGCGTGTGAAGAGGTCTCCGACGGCGAAGAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2412:5052..9186-

>mRNA_H-paniculata_contig2412.6530.1 ID=mRNA_H-paniculata_contig2412.6530.1|Name=mRNA_H-paniculata_contig2412.6530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig2412:5052..9186- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGCAGAAGGAAGACCTTCGCCAGAAGACAAAGCTCTCATGAGAA
GACATCCTGCGAGGAGTACGTGAGAACTTTTCTTCGATTCAAGCCGCTCG
AAAGAAGGCCGAAGCTGCACGTCGTGAAGAGGAGTAGGGGAAAAGGAAGT
CCGGCGGCGACCAGGTGTTCGTGGTCGACAGCAACAACAACAATTGCGGT
CGAGCGCAGGGCCGCGGGAAATCCCGTGGAGGCTTTGCTGGTCGGAAGAA
AGCCCCCAACTCCAAATCCTCTACCACCCACCACCATGTCTTCGACAAAA
GGTACGACAGCGACGATGAATGCACGAATTGTTTGGCCGAAGGGAACCCA
ACCACCATCTGCCCGAAGCAGCGATGCGTAAATGAGTGGCAGAAGGAAGA
CCTTCGCCAGAAGACAAAGCTCTCATGAGAAGACATCCTGCGAGGAGTAC
GTGAGAACTTTTCTTCGATTCAAGCCGCTCGAAAGAAGGCCGAAGCTGCA
CGTCGTGAAGAGGAGTAGGGGAAAAGGAAGTCCGGCGGCGACCAGGTGTT
CGTGGTCGACAGCAACAACAACAATTGCGGTCGAGCGCAGGGCCGCGGGA
AATCCCGTGGAGGCTTTGCTGGTCGGAAGAAAGCCCCCAACTCCAAATCC
TCTACCACCCACCACCATGTCTTCGACAAAAGGTACGACAGCGACGATGA
ATGCACGAATTGTTTGGCCGAAGGGAACCCAACCACCATCTGCCCGAAGC
AGCGATGCGTAA
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