mRNA_H-paniculata_contig241.6525.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig241.6525.1
Unique NamemRNA_H-paniculata_contig241.6525.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: D8LLC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLC8_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 3.120e-123
Identity = 225/332 (67.77%), Postives = 255/332 (76.81%), Query Frame = 1 
Query:   64 MGRTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGPSREERAAKEAGERGRRNGTVGKGAAVLGADRDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGL-DGNAEEFSEENADNWLDDDFVLQAAGADDDGGFDFDAHVARLMDASARETGQLRQRTADDNLQTEGLVRLRRLEDGSSSDEDDSDSELDNDHGGSDASGEFDESLLEGLVLGDG---GGG----GDAAERAVLDAQFEATLAGYDSDEWGELEEDDDRVQGQW 1035
            MGR KKFIDKKE++TFHVVHRSQQDKA EGEE ASEFVLIPSGP R+ R   E    G+  G  G    V GA+RDHINALGLPNDGYDY+QH KSMGGGTFVSKTG+VQHFA+  + GAR G    + +IPE AL S ETLDRQLEAVTISEKVMD DMRRALA GL D   E++ +E+  N LDDDFV+QAAGA +DGGFDFDAHVARLM+ASA+ETG LRQR+ DD+LQT+GLVRLRR  D  S D +D  + LD    GSD SGE D++LLEGL +      GGG    G   +RAVLD+QFEATLA YDSDEWGELEEDDDRVQG+W
Sbjct:    1 MGRKKKFIDKKESTTFHVVHRSQQDKANEGEEEASEFVLIPSGPPRDSRPQDERKAAGKGKGKGG----VAGAERDHINALGLPNDGYDYDQHLKSMGGGTFVSKTGKVQHFAEGNSQGARGGGA--KPAIPEEALPSGETLDRQLEAVTISEKVMDGDMRRALAAGLADVGEEDWDDES--NMLDDDFVVQAAGAGEDGGFDFDAHVARLMEASAKETG-LRQRSRDDDLQTKGLVRLRRDSDSESDDSEDDVATLDG-GAGSDDSGEIDDALLEGLDISGAAAAGGGVPGEGTEEDRAVLDSQFEATLAAYDSDEWGELEEDDDRVQGRW 322
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: A0A836CIF2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF2_9STRA)

HSP 1 Score: 148 bits (373), Expect = 5.120e-36
Identity = 147/374 (39.30%), Postives = 180/374 (48.13%), Query Frame = 1 
Query:   64 MGRTKKFIDKKEASTFHVVHRSQQDKAK-EGEEA-ASEFVLIPSGPSREER-AAKEAGERGRRNGTVGKGAAVLGADRDHINALG----------------------LPNDG--YDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAE-TLDRQLEAVTISEKVMDADMRRALAEGLDGN------------------------------AEEFSE--ENADNWLDDDFVLQAAG--ADDDGGFDFDAHVARLMDASARETGQLRQRTADDNLQTEGLVRLRRLEDGSSSDEDDSDSELDNDHGGSDASGEFDESLLEGLVLGDGGGGGDAAERAVLDAQFEATLAGYDSDEWGE 999
            MG+ KKFI+  + +T+ +VHRSQ DKA  EG+E  ASEFVL+P+G  ++ R A +  G    ++G+ G GA    A R+HINA                        LP+DG  YDYE H K+MGGGTF++K GRV      G+A  R G    R  +P  +L + E  + R L A+TIS+KVMD DM                                          EEF E         +DDFVLQAAG   DDDGGFDFDAH+ARL+ AS RE G LR R ADD+                      SD ELD+         EF      G   GD     DAA  A+L AQFEATLA YDSD WGE
Sbjct:    1 MGK-KKFIESGKGTTYRLVHRSQLDKAAAEGDEGDASEFVLVPAGEIKQRRIATRRNGGTNAQHGSGGGGARYTVA-REHINAFXXXXXXXXXXXXXXXXXXXXXXXLPDDGTGYDYESHLKTMGGGTFINKEGRVGSVPLPGDA--REGR---RAVLPAESLPAEEGEVARNLAAITISDKVMDDDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEEFDELEXXXXXXXEDDFVLQAAGDGGDDDGGFDFDAHIARLIAASEREVG-LRPRGADDDFSG-------------------SDGELDDPS-------EFSTPSESGSYSGDAPTA-DAAAAALLAAQFEATLAEYDSDTWGE 339
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: A0A7S0XBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBG0_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.470e-28
Identity = 92/226 (40.71%), Postives = 119/226 (52.65%), Query Frame = 1 
Query:   64 MGRTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGPSREERAAKEAGERGRRNGTVGKGAAV----LGADRDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRV--QHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAE-EFSEENADNWLDDDFVLQAAGADDDGGFDFDAHVARLMDASARETG 720
            MG+ K FI K E  T+HVVHRSQ D A   EE  S++VLIP+  S  +   K      + N +V    ++         DHIN LG  NDGYDY +H K + GG F+   G +  +   +E             I IPE  L SAE  DR LEA+ IS+K MD D+R AL    DG+ + EF E      LDDDFV+Q     +   FDFDAH+ARL+  S ++ G
Sbjct:    1 MGK-KPFIKKSEGQTYHVVHRSQTDSAYANEEKPSDYVLIPAQLSNNDNRRKF-----KDNQSVYSNNSIDFKQFTRKGDHINHLGFKNDGYDYSKHIKVVDGGKFIGLNGELLERPVVKE-------------IEIPEDLLPSAEEFDRNLEAIVISDKYMDDDIRNAL--DFDGDEDGEFEE------LDDDFVIQVMAEPEVPDFDFDAHIARLIANSEKDLG 199
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: A0A7S0XBI8_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XBI8_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.250e-27
Identity = 92/226 (40.71%), Postives = 119/226 (52.65%), Query Frame = 1 
Query:   64 MGRTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGPSREERAAKEAGERGRRNGTVGKGAAV----LGADRDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRV--QHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAE-EFSEENADNWLDDDFVLQAAGADDDGGFDFDAHVARLMDASARETG 720
            MG+ K FI K E  T+HVVHRSQ D A   EE  S++VLIP+  S  +   K      + N +V    ++         DHIN LG  NDGYDY +H K + GG F+   G +  +   +E             I IPE  L SAE  DR LEA+ IS+K MD D+R AL    DG+ + EF E      LDDDFV+Q     +   FDFDAH+ARL+  S ++ G
Sbjct:    1 MGK-KPFIKKSEGQTYHVVHRSQTDSAYANEEKPSDYVLIPAQLSNNDNRRKF-----KDNQSVYSNNSIDFKQFTRKGDHINHLGFKNDGYDYSKHIKVVDGGKFIGLNGELLERPVVKE-------------IEIPEDLLPSAEEFDRNLEAIVISDKYMDDDIRNAL--DFDGDEDGEFEE------LDDDFVIQVMAEPEVPDFDFDAHIARLIANSEKDLG 199
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: A0A6A4EL32_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EL32_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.320e-27
Identity = 124/367 (33.79%), Postives = 167/367 (45.50%), Query Frame = 1 
Query:   64 MGRTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGPSREERAAKEAGE--------------------------RGRRNGTVGKGAAVLGADR---------DHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAEEFSEENADNWLDDDFVLQAA--GADDDG--GFDFDAHVARLMDASARETGQLRQRTADDNLQTEGLVRLRRLEDGSSSDEDDSDSELDNDHGGSDASGEFDESLLEGLVLGDGGGGGDAAER----AVLDAQFEATLAG-YDSDEWGELEEDDDRVQGQ 1032
            M R K+FIDKK A  FHVVHRSQ+D  K  +  AS++VL+ S    E R+  E+ +                          + ++  +   G A     +         D ++  GLP DGYDY QH K MG G F S T R        +AG  A A + ++ +PE AL SAE  DR L+A+T++  VMD D+R AL      N E F E      LDD+FV+QAA   ADD G   FD+DAH+A+LM+A++                  G+  L R   G+ +D +D                EF +                  +R     VLD  FE TLA  YD D+ GELEEDD   +G+
Sbjct:    1 MVRKKQFIDKKSAQHFHVVHRSQRD-PKANDPEASKYVLLSSSQHVELRSDSESDDEYEDDGGDSELDSDDEMPDLVDTKSTKPKKKSSSSSGRAAFPVRKVRFGGVEAEDLVDENGLPRDGYDYSQHMKEMGQGKFYSATSRF-------DAGEEARALSRKVDLPEDALPSAEEQDRLLDAITLTTDVMDEDLREALV-----NDEAFEE------LDDNFVVQAAEQNADDAGTDDFDYDAHIAKLMEAAS------------------GVTPLYR---GNLTDSEDE---------------EFSDDXXXXXXXXXXXXXXXTPDRDEEQRVLDELFEKTLAEEYDDDQLGELEEDDPETRGK 312
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: H3GXQ9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXQ9_PHYRM)

HSP 1 Score: 117 bits (294), Expect = 1.240e-25
Identity = 126/357 (35.29%), Postives = 164/357 (45.94%), Query Frame = 1 
Query:   55 PASMGRTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGPSREERAAKEAGERGRRNGTVGKGAAVL----------------------GAD-RDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAEEFSEENADNWLDDDFVLQAA-------GADDDGGFDFDAHVARLMDASARETGQLRQRTADDNLQTEGLVRLRRLEDGSSSDEDDSDSELDNDHGGSDASGEFDESLLEGLVLGDGGGGGDAAERAVLDAQFEATLAG-YDSDEWGELEEDDDRVQGQ 1032
            P +  R K+FI+KK A  FHVVHRSQ+D  K  +  AS++VL+ S    E R+  E+ +              L                      G +  D ++  GLP DGYDY QH K MG G F S T R        +AG  A A + ++ +PE AL S E  DR L+A+T++  VMD D+R AL      N E F E      LDD+FV+QAA       G DD   FD+DAH+A+LM+A++  T   R    D              ED   SDE          H              E L L +     D A+RA LD  FE TLA  YD ++ GELEEDD   +G+
Sbjct:   16 PGANVRKKQFINKKTAQHFHVVHRSQRD-PKANDPEASKYVLLSSSQHVELRSDSESDDDXXXXXXXXXXXXXLVDAPSAPKKSKAAFPVRKVRFGGVEAEDLVDENGLPRDGYDYTQHMKEMGQGKFYSATSRF-------DAGEEARALSRKVDLPEDALPSVEEQDRLLDAITLTTDVMDVDLREALV-----NDEAFEE------LDDNFVVQAAEDNAEDAGTDD---FDYDAHIAKLMEAASGVTPLYRGNITDS-------------EDEEFSDEXXXXXXXXXXH--------------EDLELPEDR---DEAQRA-LDELFEKTLAEEYDDEQLGELEEDDPETRGK 319
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: A0A024TFD3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TFD3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.570e-24
Identity = 123/338 (36.39%), Postives = 161/338 (47.63%), Query Frame = 1 
Query:   70 RTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGP---SREERAAKEAGERGRRNGTVGKGAAVLGAD--------RDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAEEFSEENADNWLDDDFVLQAAGA---DDDG------GFDFDAHVARLMDASARETGQLRQRTADDNLQTEGLVRLRRLEDGSSSDEDDSDSELDNDHGGSDASGEFDESLLEGLVLGDGGGGGDAAERAVLDAQFEATLAG-YDSDEWGELEEDDDR 1020
            ++K FI+KKEA  FHVVHRSQ+D      EA S+FVL+ S P    R E  A ++ +    +  V + AA  G          RD +N LG+ NDGYDY +H K MG G F S  G     A   N          R+ +P+  +ASA   DR L+A+T++E VMD D+R AL      N E F E      L DDF+LQAA     D DG      GFD+DAH+A+LM A+A    + R   +DD    E        E    +DE+  D   D D                             A+RA+ DA FE  +A  YD ++ GELEED+ R
Sbjct:    4 KSKSFINKKEAQHFHVVHRSQRDPLINDPEA-SKFVLLSSKPLPSGRNELDAYDSDDSDLPD-LVPQVAAPSGKTVRFGNVVARDLVNELGMVNDGYDYSKHMKEMGQGHFYSAGGTYDEGAGLLNK---------RVVLPDEVMASANEHDRMLDAITLTEDVMDEDLREALV-----NDEAFEE------LTDDFMLQAAQELPDDADGADVAADGFDYDAHIAKLM-AAAEGIPKYRGHISDD----EDXXXXXXXEGCEYTDEEHEDDGQDKDD----------------------------AQRALDDA-FEKLMAEEYDDEQVGELEEDETR 285
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: A0A8J2S7W7_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7W7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.920e-24
Identity = 85/215 (39.53%), Postives = 110/215 (51.16%), Query Frame = 1 
Query:   67 GRTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGPSREERAAKEAGERGRRNGTVGKGAAVLGADRDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAEEFSEENADNWLDDDFVLQAA--GADDDGGFDFDAHVARLMDAS 705
            GR KKFIDKK A+T++VVHRSQQD A   E+  SE VL+   P                         V  A R  +   G  +DGYDYE+H ++ GGG FV   G V   A                ++P  AL   + L+R +EAVT+ +++MDAD+R AL    D  A E  EE     L DDFV+ A+   AD+   FDFDAHVARL+ A+
Sbjct:    4 GRKKKFIDKKAATTYNVVHRSQQDGAFGLEDRPSERVLLAQAP-------------------------VNAARRARVTRAGFADDGYDYERHLRAGGGGVFVGADGSVSKAA----------------ALPPEALPGEQELERAVEAVTLDDRLMDADVRDAL---FDDAAFEDCEE-----LLDDFVMDASRPAADEPAEFDFDAHVARLIAAA 169
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: A0A484EID0_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EID0_BRELC)

HSP 1 Score: 112 bits (280), Expect = 9.330e-24
Identity = 120/355 (33.80%), Postives = 174/355 (49.01%), Query Frame = 1 
Query:   61 SMGRTKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSG----------------------PSREERAAKEAGE---RGRRNGTVGKGAAVLGAD-RDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAEEFSEENADNWLDDDFVLQAA----GADDDGGFDFDAHVARLMDASARETGQLRQRTADDNLQTEGLVRLRRLEDGSSSDEDDSDSELDNDHGGSDASGEFDESLLEGLVLGDGGGGGDAAERAVLDAQFEATLAG-YDSDEWGELEEDDDRVQGQ 1032
            + GR K+FIDKK A  +HVVHRSQ+D  K  +  AS+FVL+ S                       PS  +  AK + +   + R++    +     G +  D ++  GLP DGY+Y QH K MG G F S T R        +AG  A + + ++ +PE AL S +  DR L+A+T++  VMD D+R AL      N E F E      LDD+FV+QAA      +D   FD++AH+A+LMDA++                  G+  + R   G+ +D +DS+ + DND   S       +    G+ +       D A++A LD  FE TLA  YD +  GELEE D   +G+
Sbjct:   25 TQGRKKQFIDKKTAQHYHVVHRSQRD-PKANDPDASKFVLLSSSQHVELHSEPDDEDSELDSDDDMPSLIDTPAKTSNKLKVKLRKSDFPVRKVCFGGVEAEDLVDENGLPRDGYNYSQHMKEMGQGKFYSATSRF-------DAGEEARSLSRKVDLPEGALPSIDEQDRMLDAITLTTNVMDEDLREALV-----NDEAFEE------LDDNFVIQAAEENVDQEDVDDFDYEAHIAKLMDAAS------------------GVRPMHR---GNITDSEDSEDD-DNDIRAS-------KQDSVGMAI-----DRDEAQQA-LDELFEKTLAEEYDDELLGELEEHDPETRGK 325
[Close]
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Match: W4FC43_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FC43_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.290e-23
Identity = 95/250 (38.00%), Postives = 132/250 (52.80%), Query Frame = 1 
Query:   61 SMGR-TKKFIDKKEASTFHVVHRSQQDKAKEGEEAASEFVLIPSGPSREERAAKEAG--ERGRRNGTVGKGAAVLG----ADRDHINALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRISIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAEEFSEENADNWLDDDFVLQAA--------------GADDDGGFDFDAHVARLMDASARETGQLRQRTADD 747
            +MG+ +K FI+KKEA  FHVVHRSQ+D     + +AS+FVL+ S P+ ++  + ++   +   ++ T    A  +        D +N LG+ NDGYDY +H K MG G F S  G     A   N          R+ +P+  LASA   DR L+A+T++E VMD D+R AL      N E F E      L DDF+LQAA              GAD   GFD+DAH+A+LM A+A    + R   +DD
Sbjct:   29 TMGKKSKAFINKKEAQHFHVVHRSQRDPLI-NDPSASKFVLLSSKPAVDDYDSDDSDLPDLVPQSATAPPAAKAVRFGNVVAHDLVNELGMVNDGYDYSKHMKEMGQGHFYSAGGTYDEGAGLLNK---------RVVLPDDVLASANEHDRMLDAITLTEDVMDEDLREALV-----NDEAFEE------LTDDFMLQAAEDLPVEQGDGAAAGGAD---GFDYDAHIAKLM-AAAEGIPKYRGHLSDD 253
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig241.6525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLC8_ECTSI3.120e-12367.77Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CIF2_9STRA5.120e-3639.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0XBG0_9STRA3.470e-2840.71Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S0XBI8_9STRA1.250e-2740.71Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A6A4EL32_9STRA5.320e-2733.79Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
H3GXQ9_PHYRM1.240e-2535.29Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A024TFD3_9STRA1.570e-2436.39Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8J2S7W7_9STRA2.920e-2439.53Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A484EID0_BRELC9.330e-2433.80Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
W4FC43_9STRA2.290e-2338.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig241contigH-paniculata_contig241:439..10435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score380.9
Seed ortholog evalue6.1e-103
Seed eggNOG ortholog2880.D8LLC8
Preferred nameLTV1
KEGG koko:K14798,ko:K14811
Hectar predicted targeting categoryother localisation
GOsGO:0000054,GO:0000056,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008361,GO:0009058,GO:0009059,GO:0009987,GO:0010008,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016072,GO:0022402,GO:0022613,GO:0022626,GO:0022627,GO:0030684,GO:0030688,GO:0031090,GO:0031410,GO:0031503,GO:0031902,GO:0031974,GO:0031981,GO:0031982,GO:0032535,GO:0032991,GO:0033036,GO:0033750,GO:0034448,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034660,GO:0042023,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044786,GO:0045184,GO:0045793,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090066,GO:0090304,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901360,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit export from nucleus
EggNOG OGsKOG2637@1,KOG2637@2759
EC3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons7
Model size1040
Cds size1038
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.5554214-CDS-H-paniculata_contig241:438..5131622929693.5554214-CDS-H-paniculata_contig241:438..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 439..513 -
1691480969.7798085-CDS-H-paniculata_contig241:438..5131691480969.7798085-CDS-H-paniculata_contig241:438..513Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 439..513 -
1622929693.5682101-CDS-H-paniculata_contig241:1108..14171622929693.5682101-CDS-H-paniculata_contig241:1108..1417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 1109..1417 -
1691480969.7946434-CDS-H-paniculata_contig241:1108..14171691480969.7946434-CDS-H-paniculata_contig241:1108..1417Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 1109..1417 -
1622929693.5818694-CDS-H-paniculata_contig241:2595..27261622929693.5818694-CDS-H-paniculata_contig241:2595..2726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 2596..2726 -
1691480969.8132327-CDS-H-paniculata_contig241:2595..27261691480969.8132327-CDS-H-paniculata_contig241:2595..2726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 2596..2726 -
1622929693.5973976-CDS-H-paniculata_contig241:4409..45771622929693.5973976-CDS-H-paniculata_contig241:4409..4577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 4410..4577 -
1691480969.8245583-CDS-H-paniculata_contig241:4409..45771691480969.8245583-CDS-H-paniculata_contig241:4409..4577Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 4410..4577 -
1622929693.6201992-CDS-H-paniculata_contig241:5402..55651622929693.6201992-CDS-H-paniculata_contig241:5402..5565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 5403..5565 -
1691480969.8345137-CDS-H-paniculata_contig241:5402..55651691480969.8345137-CDS-H-paniculata_contig241:5402..5565Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 5403..5565 -
1622929693.6424222-CDS-H-paniculata_contig241:8403..85291622929693.6424222-CDS-H-paniculata_contig241:8403..8529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 8404..8529 -
1691480969.8443289-CDS-H-paniculata_contig241:8403..85291691480969.8443289-CDS-H-paniculata_contig241:8403..8529Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 8404..8529 -
1622929693.656305-CDS-H-paniculata_contig241:10369..104351622929693.656305-CDS-H-paniculata_contig241:10369..10435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 10370..10435 -
1691480969.854038-CDS-H-paniculata_contig241:10369..104351691480969.854038-CDS-H-paniculata_contig241:10369..10435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig241 10370..10435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig241.6525.1prot_H-paniculata_contig241.6525.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig241 439..10435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig241.6525.1

>prot_H-paniculata_contig241.6525.1 ID=prot_H-paniculata_contig241.6525.1|Name=mRNA_H-paniculata_contig241.6525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=346bp
TRKRPSTVVSHIFCDYPDPASMGRTKKFIDKKEASTFHVVHRSQQDKAKE
GEEAASEFVLIPSGPSREERAAKEAGERGRRNGTVGKGAAVLGADRDHIN
ALGLPNDGYDYEQHFKSMGGGTFVSKTGRVQHFAQEGNAGARAGAGAGRI
SIPEAALASAETLDRQLEAVTISEKVMDADMRRALAEGLDGNAEEFSEEN
ADNWLDDDFVLQAAGADDDGGFDFDAHVARLMDASARETGQLRQRTADDN
LQTEGLVRLRRLEDGSSSDEDDSDSELDNDHGGSDASGEFDESLLEGLVL
GDGGGGGDAAERAVLDAQFEATLAGYDSDEWGELEEDDDRVQGQW*
back to top

mRNA from alignment at H-paniculata_contig241:439..10435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig241.6525.1 ID=mRNA_H-paniculata_contig241.6525.1|Name=mRNA_H-paniculata_contig241.6525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9997bp|location=Sequence derived from alignment at H-paniculata_contig241:439..10435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCGCAAGAGACCTAGCACTGTGGTATCTCACATCTTCTGTGATTATCC
AGACCCAGCAAGTATGGTGAGGAGTTATAATACATTTGACATGACTGTGC
CTTCTCACGTTCTAGACATCGGTTCTTATCTCTCCCTGTTGTGGATGTCG
CCCGAGGTCGAGAGTAATTTTTTCAAGGCATGTAGACCAACCGATACATC
ATTCCAGGGCAGGAGGCAGCTAATTCCACTTGCTCTACCATGCCGTCCGT
ACTCACTGACCGTTGTTCTGTTATGCAGTCAGTACAGACAGTACAATATA
TTTGAACTTTTGGGTAAGGTGGGTAATGTAATGCGGGTATGGAGGGGTGA
CCATCACTCAAAAGTGATGCTCGTCAGCCAGTCGTGGTCGTTACGGAGTC
TTGATAAACGAAGCTTCAAGCCTTATCCCTTACAGACCACCAAGACATAT
TTCGAGGAGCGGATTTTGACAGTCCCGCGTAAAGAAAAGGGGGTGGTACT
TGGTTATGGGGGGAGTGCAGAGTTTTTGACGAACACGATTGCTTTGATCG
GGTTAAGATCAATCCCGTTATGTCGACAAAGATATGGCGTGTTTTGATAT
CAATATGAATTTAGGATATCAGATGCTGTAAAAGGGCATGAGATACTTTC
GACAATATTCATGTACAAAGGGCCGGCACAGCACCTGTCGTGCTCTGTGA
TGGGTGTAGAAGTGATACAGCTGACAGACTACACTACACCTGTCAGGTCC
CTCAAGCGGTCGCAGTCAACAGGTACATCATGATGCCGTGGAGCATGCGG
CACACAGGAGCTGGCAGGCACCAGCATATTATTTCGAAATTTCCCTAGCG
GATGATAGTCGCTGCGTATGTGGCGTCCTCTTATGAGTGACGATGCCCAC
AGGCAAAGCAGCAGGCGGTCTGCGACAATCACTCGTGGCAGTTGGGATAT
TAATAGATGACTGATATTTATCGTAGTTGGTGATTGGGGATTGGGCTTCT
TGGAACAAAGTTGTTTCTTCCGGTCGGTGAGATTTTTTTGCCAAATATAA
GGAAGTTATCCGAACCTACTAACATTGATAATTGTAGCAGATCAGTCATT
ATCTAAAATATCACTACTGCTGTATTGTTTGTTGTACTGTCAAGTACTAT
AACTGTCTTACATGTCTGTATTCCATGATATGGGAAGGCAAGATTGTGAA
GCTTTGTCGGTCAAATGGATCGACGAGTCGTCCCACAATAGGGCAGGTCT
ATTATGGGAAAAATGCATGCCGTAGTCACTACAACCATCGATCTGCATCC
TTGCAATGCCGGGACGGAGAAGATTAAGTTTCGCCGGCCAAAGTCCATTT
CACAAGGGTGATGCAAACCATTAGCCATCATTATTGTGTTGCTGCGCCAA
CCGGATTCCCACCCAGTGTTATGCATCTGGACCCTCCGTGTTGTCCGATG
GCGAAACATAAAGAAATAGGTTGCGCACTAGTGGTTAATTTTTTCAACAT
TCTCCGTGGGAAATGGCACGGGGCGAAGGCAACGAGCTCAAGGAAGTTGT
GAAGCCAGCGATCAGTTTTACACAGCGAAAAATCTTTTACATATTTATGT
TATTAAGTAGGCTCGGAAACATGAAAAACTCGTTCATCCCAGCGCATGAA
CGGTAAATGTATATATGTCGTGAACACTGCGAAAAAAAGCAATGCCTATA
TTATACAAATTTGGAAGTCATTTTCTAATATCTTATTTAGGAAAGATGAA
ATAGATAACCTTTTTTGCATTTTCAACAATATGTATGTTTATATGCATTT
AGGAGCTCGAACTCAGTGATGATAATGTACTGGATGATGATTTATGTCAA
TGACCCTCCTTTTCGACGGGTCGTGAGAAACATTGAACATTCGCCCACAC
ACACAGGGTCGGACAAAGAAATTCATCGACAAGAAGGAGGCGTCGACGTT
CCACGTAGTGCACCGCTCTCAACAGGACAAGGCAAAGGAGGGCGAAGAGG
CGGCCTCCGAGTTCGTGCTCATCCCATCTGGGGTATGTATTGTCAGAGGG
AGGGGGGGGGCAACCCTAAAAGGTTAGCTTAGTGTTTTGTGGACGAAAAC
AACGGAGCGACAAACAAGACGCGTGTTATTGTGGTTACTTTTCAAAATAG
CACAAGAAAAAACGGAGTAAATTCTTGATCGATAAGCATATGTTCACAAA
AAATATATATCGTGTAGCCAAATTTGATCGGTCATGAATCTATTTGTAGT
GTAGGATTAATAGCTTAGTTTCCAAAGTATTTTGGCACTGGTTCAAAAAC
AAAATAAGGACAATTACCATCATACATTGCCGGAGATAACAGAGATAGAC
AGAGGGAGGGGACTGTTTGTGCAGCCACACAGACAGTATTGTTGGGTCAG
CATGATGGACACATGCAACTGCTGTACAAAAATGTTGCAGCCAAAATACC
GTCTGTAGATAGACTGCTGTCAACATGAAAAATTATCGTCGATAGAAGGT
AGGTTTAGGTAAACAAGACGTTGATTACTGGACTACAGAGGCACCGAACA
AGCAGGACGAAGCCCACCTTCATAACAACATCACAAGACTGTTGCGTCCT
CACCGTTTGATTCGCACTGTCAAGTAGCCCCCACCGCCGTGCGATGTGCG
GTGGTGTGTGTGACCTGATGCAAAAGTCTTTTTTTTTTCTTTCCTTTTTT
TGCATGTTACCTTGGTAAAATTACTGGAGTAAAACTGCCGCAATAAAACC
ACGGTATTCGATATTGGGTAAGATGCTGTGAAAATCTCGAGTTCCTGTTG
TGTTACTGTTACTGTTACCGTTACTGTTATGTTGGACGGTACCGCCAAAC
GCTATTTACCGCGGTACCAAAGCTAGATACCGATACCGCAACCGCGATAT
GGACCTATCGTACCGCTATCGTACCGTGAAAAGCGTCGTACCGTTTATGC
ATCATTTTATGTACCGTTGTTCCCTAATACCGCACCCGCAGCCTACCGTT
TAATCTCAGGACCGTAGAGACCGTAAAATCGTAGAGGAACGTAGGTCTGA
TTTGAAATTTCACGTGAAGTTTGTGTCTATAAAAAAAAGCAGCTGGCGGA
ATTGTTGAATTTTGATTTTTGTGGGGATACGAGGAGCTGCGGGTTGGATT
GTTTAGTCTGAGTATCCTCATATGGTAATGAGAGCTTTATTTTTTGCCTT
GTATAATTTTTACACGAATCAGAATGCACGTCGGAATAGCCCATATGAGT
CTTAATCAGATCTTAGCTTTTCAACGATTTCATCCGTAACCGTCGAAAGG
TTTGAGATGTGGAGAAAGGATCTGCCAAACTCAAGCAACTTTACTCACTT
TTGGCATAGAAGATACAAATTTGTTTATGTGGGGTTGTTGGATATTGGGG
TATTGGGGGTGATTCAGGGGGTATCACACAGGTCAGGGTTTGAACCGAAC
TCTCCCCCGACACACACTCTCTCATGACTCAGCTGACCGCACCTCTGTTC
GTATAGGCTCTGGCTGGTCTGCTTGGTTGTGTAGACGAGCTGGTAGGCCT
CTTTTTATGCTGTGCGGATACCACTGCATGCGTGTAATCCCCGCAGCAGC
GTTGGGCAGGTAATCAAAGCCGCTGAACCATCTTGTCCGACACCATGATG
TGTTCGTCTTGCATATATTCAGAATCCTCTCGAAAGACATGTACCTGCTG
CACAATATCCATGTTTCGACTGCGCAGACCCATTGGTTGTTTTTTATTTC
AGTAGATGAATAACAATTGATATCCCGAAAAAGTTCTGGATAATGCCATG
GTACACCCCTGTTACTCCTCATTTCCCTGAATTCCCTTATCGCACTTCTT
GGGGGGTGGTTCAAGCCCTGCCTTCTGTGACACGCATTAGGTGGTTGATC
ACTGTTTGTTGGTTATTTGTTTTTCATTTTTCGTGTTTGGGGGTCAAGAG
CAGGAAGAATGCACACCAGCTGTCTCCTCATTTGTTTTTTCTCACGTCTA
TATGTTCTGCGCAACACCAGCGGTTATCGAGTGCTGCAAACCAATCACAC
GCGGATTACTTGTGGATAATGGTTTCATTATCACTCGGTAGTTTTTTTTA
TCAATGTATCTTGTTGCCCTCGAAATACTCATCGTGGTTTTATCCTTAGC
TTGGGACCCAAATCCCGAGTACTGTACCGCACGATACCTTGAAAACGAGA
AACCATACCCTATCCTGCCGTACTACGTTGCCCAAAACCGAATACCATTC
ACGGTACAAATACCGAGGGAAACAAATACTGTAGCGTACCGTAACTCGAA
CACCGAATACCGCTTACCGGACAAGTACCGAAGAAAACAAATATCGTGCT
ATATCGTACCGAGTAGCTCGAAAACCGGGTACTGTATACCGAGAAAATAG
AAACCGTATTGTTTCTGCCAGATTCAAGTATCGTTCCCAAGAGGACCTTT
TTTTTTTTTTTTACGAAGTACAAGGGAAAGTGGCCGTTGCTGAGTAGTAA
TTGGCCCTTGGTTCTCCTCAACTTACAGTTGATTTGGTTAAGTGACAAGT
GAAGGCATTATGAACACACGGAGCCTTGGCGCGTGGATCGGGTTGTGGGC
GCGAAATGCAACAAGCAACAACAGGAGTGTAGCAGTGGCCCCAATGGTAC
TACGGATGTCGACATGATCAACTCTCTATGATGATGCCTGCTGGTCTTTT
TTTAATTATAGAAACAACTGTTTTCACCCCCCCCCCCCCCCCCCCCCCCC
CCTACACACAGACACACACACCCAAAGAGAGGGTCCGTTGTGGCATAAAA
TAGGATACCTGCCTTCCCCCCCGCTGTCGTAGGACAAGAAATGTAAATAC
TGCTTTTTTGGTATATGCAGCCGAGCAGGGAAGAGCGGGCGGCAAAGGAA
GCTGGTGAGCGAGGCAGAAGGAATGGAACGGTGGGGAAGGGAGCAGCAGT
GCTGGGCGCTGATCGTGATCACATCAACGCCCTTGGCCTACCTAACGATG
GCTATGACTACGAGCAGCACTTCAAGTCCATGGGTGTGTGTGGATTTGTG
GATTTTGTTCGCAGAATTTAGTCGGTATTTAAACGACGAGCTTATCATCG
TAGTATTCAAGAGCATTGCTGGATATGAATGTTGTTATACTGCGTGTTGT
ACGTTGGAAGTAACTGTGAGAGTGCGTAGGGAAGTTGAACTATAAGGACC
GACGCCCGGATGGGTAGGGTGACTCGTGTACAGAGTCGAGCTGGGGGTGT
TTGCAAGAGGTTTACTCGGTTTGAATCCGAGACTACCTGGGTAAGAACGG
AGTAGAGGTTACCTAGGTGCCTACCCGTCCGCGGAAACCGTTGTGATGAA
ATCCCAAATAGGGATCGAAACGAGGTGAAAGCAGGGCGTACCGGGAAACC
GGCAAAGTGCCGTACGAAAGCAATTTTATTATTATATAAGTGCATGGGAG
GGGTTCCTTCCTGGTCTCCCGTGGACCGAAAAAAAAAAAAAATTGAACTA
AATACTGGTAAATGTAGCCTTTGCTGTTTGAACGTGATTTCACCAACGCG
TCCCGGAAGGGCTGTTCAAATGCGATGGTTTATTTGTATTTTGTGTTGTG
TGTTTGTTGTTTCTCCCAAGTGATATCTCATTGTAATGTACCTATCTGCG
CTTTCAAGGCAAGGGGGGCAGAGACCCCCAAGTTTACCCGAAGAGCAGTG
CACTTTGGAAGAAAAATGATCATTCTATTGTTCAAAATGCACCCATATAC
AACACATAACGAGAAATGCACTTGCGTATATGAGGGAAAATCATTTTCTT
GCCCCCGGCCTCTTCCCCATGTTTTTTTTTTTTTAATGAAAAACAATAAC
AATAATAGGAGGAGGGACTTTCGTTTCAAAAACGGGGCGAGTGCAGCACT
TTGCACAAGAGGGCAATGCTGGCGCGAGAGCGGGGGCCGGGGCAGGAAGA
ATTTCCATCCCCGAGGCGGCGTTAGCGTCTGCAGAGACACTAGATCGACA
ATTGGAGGCGGTCACCATCAGTGAAAGTGAGTCGCGAGAAGCTGGACGAA
ACCGGTGGCAGACGGGGGGAGGGGGGGGGGGGGGAGGCATACTCCCCTTA
ATATGCACTATCGAAGGAGAACATACGGTTTTGTGGTTCACAATCATGCC
CATAGTAACAACAACAATAATAATAATAATGATGGATGATGATCAGATAT
CCTCATGAGCAAAATTAGAACATTGAAAAAGAGCGCGGGCAGGGGGCGGG
GCGGGGGGCGTACTCGTGTTTCGTGTGCGATCGCTGTTTACCCACTCACC
ACGCATCCTCGAGAGTGTTCATACTCACTATGGCCAAACGCTTCTAGCTG
CTTTTTCCGAAGGTGACTCGGTAAAGGTTTTGATTTATGTTGTCAATGTT
TGCTCTTGGGGAGAGGGGGGGGGGGAGGGGTGTAAGCCATACTCAACGAA
GGAGTCTACACGCTTAAGTTACCGTTGATCGGTACTGTCATCAAGTTCAA
AATCGGCCCGATATATCATACGCTCCTTTTTTACGAATAGCTTTTCCAGT
CCCTTTACATACTTGCATCAGTTCATTAGCTAATTTATTGCTATTGTTTT
TTGGTTTTTTTCCAGAACGTGCTCTAGCAAGTTGGATAATACAGCATAAA
TCTCGTTTGTTTTACACATTTTTTTTACTTCAGTAGAGACCTGATAGGTT
GACCACCAAAATGTCTCGATTTTTTTGTTTTAGCTTGCTGGACTAACGTT
GGCATTTGGCCCAGTAAGTAGAGATATTATTATTATTATTGGCCATTTGT
GATGTTTTTGTTAATCATTGTCAAGCCAACACGACGGAATGCACTACGGA
TCGCTGACAATTTACCCAGAAATAAATTGAGGCTCAAGTTTTGCTTGAGC
ATGAGAAATTCCGGTTGAAAGAATGTGGCTCAAGATTGTGACCCCATACT
AATTTCTTTAAAAAATTGAGAAAAAATATACATCTACTCGTGACTCTCGC
CAAAATTAGGTTTTGAGCACTTGACCCGAAATAAGAGTTTCTTGTCATTG
GGTCTGTCCTGTATTTGATACTTATATGGAGGTGATAGTAGTAGTATCTC
AGTAGAATAGTAATGGAGGTGCGGGTGTACTGTCCTCTGTTAAACAAGGT
GCTGATTCACATCATTGCACCCGGAATATAATATTATGCTTGACATAACG
CAAGGGCCTCTGTTGATAAATTTCCCCTCATCCCCACCCGTGAGCGCAAG
CGCGCCGGCGAGCAGTCGTGCACGTACCACAAGATCCTTGACCCCCCGGA
TGGAAAATAATGAAAAAGAAGAAAATATTCGCTCGAGTTTTAGTGTGTTC
GGGCACAAGAGAATAAAATTTTGACTCCCTGTTTATTTATTTCACCATTT
ATTTGTTCGGAGCAATCGTGAATAACCTGGGCCACATGTAGGACAAACGT
GCTTGCCCATGCTAAACCTTTGTGCGAATATTTTCCATTATTCGTCTTTG
GTTATTTCAAGTAATGAGTGTGTTTGTACGGGGTGGGTTGAGGTGAAAAT
GGTTCGACTTCTCCTCTTTACACACAATTTTGTTTTTGCCACATCTTGCT
ATCGTTTCACTGCGTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTGC
TGCTGCTGTTGCTCTGCTGCTGCTATCGGTGTTTGTTGAACATGAACACG
TGATCTCAGAGGTTATGGATGCCGACATGCGGCGAGCTTTGGCGGAAGGA
TTAGACGGGAACGCGGAAGAATTTTCGGAGGAAAACGCGGACAACTGGTT
GGATGATGACTTTGTCCTGCAGGCGGCCGGCGCAGACGATGTGAATTTAC
TGGGTTTTTTTTTTTTGCACTCACATACATAGGTACTGGTAGGAGGGCAA
ATCAATCAAGAAGTATATATGTAGCATGAAAAGGGGGAGGTAGGGAGGAG
GGCGGGTACCCGCCGCAAACCTTGTTCACAAGTAAACCCATTTGCCAGTG
TAAGTAGATCGAGGTCGCTCGTATACTAGCTCCATCGTACTCATGTTGAA
GTTATGCAGCTGACCTCAATCTCTCAGTTGTCGTACGGTTGTCATCAAAA
TTAGAGCAAATAAGGAACGAGTGTACTCATAAAAATGCATCTCGTAGTCA
TTGACTTCGCATCCCTACAAGATCGGGACGGCGCATGCCGGATATTCGCC
AGCCAGGCTGTATCTCACGAGCGTGATACTAGCCATTAGTCGTCTTTGCG
TTTGCTACGTCGACCAAAGTCTGCCATGAGATTTTAGGCATTCTCGGTAA
TCAAAGGCGGCACATTGGGCAGGTGTGACTATGCCCCCCAAGTACCGCAC
GGGACTGTGGTCTTCAGCGCGCACGTAGAAGCAACGTCGCGCTGCACACA
TGAAACAAGTCGCTCCGTGTGTGGTGCACTTCGGGAATAACCTGCTCATG
TTCTCCTGATAAAAAATTGCTTATGAGTATTTAGTATTTTGTTCAAGAGG
GCTACAACTACCAGTTGAGCAAACATCCCACTGAGTGTGAAATATTTAAC
CGGGATCAACGAACTCACCAAATACAGGGCATGAGCATCCCCATGTTCTA
TACGTGAAAGGTTTACAGCTCAATGCCACAAGAGCAAACCTCAACGAGGC
AAGAGGAAGAGGGGGGGGGGGAGTTGTATTATCTAATATTGCGTCTTATC
TGCGAGCCTACCTGCCACCGGCGGTCGAAATTACATGTCTGCGCAGCGGC
TAATTTGCCCTCAAAAGCGGTTGTAAAGTCCACGCGGTACTTGTACCGTT
AACGTTTGCCAAGCTCTCGTGTGATTCAAAATATATTCATTCATTTAACA
GTGATCAGTCTCCGTTGATAAAAAAAACGCCAAACTAAAAGTCCATAAAT
ATATGGAGCTATACATGAACTTACGGTTATTTTTTTTTTCCCACGCAATA
TAAGAGCATAAAAAAAGAAACTCGTTCCTCCCTCCTCCCCCGCCCTCCAA
AATTGACGAACAAAAAAGGACGGCGGCTTTGACTTCGACGCTCACGTGGC
GCGTCTCATGGACGCAAGCGCCCGAGAGACCGGCCAACTGCGACAGCGCA
CTGCGGACGACAATCTACAGACCGAGGGCCTCGTGCGGCTGAGGCGATTA
GAGGATGGCTCTTCCTCGGACGAAGACGATTCTGATTCGGAATTGGATAA
CGACCACGGTGGATCAGACGCCAGCGGGGAGTTCGACGAGAGTTTGTTGG
AGGGATTGGTTCTTGGCGACGGGGGTGGGGGGGGTGATGCAGCGGAGAGG
GCAGTACTTGATGCACAGTTCGAGGCGGTAAGTACTGTACTGCCCCTTGA
TATCGCCCCGCCCTGCTCCGCCCCCCTCCGTTCGTGTGAAATCTGCAATT
TTCCTTTTATTATACATTTGTGCACATGAGTCAGGTATTTGAACTTATCC
GTCGTTGCGCTCTTTTTTTATTATTGGTTTAATATTCTCCTTGATTAGAG
AAATAACCAATCCTGCTGTCTGTTCGGGGGGACAGGATTTAGTCATGAAT
AACTAAATGAACACCTAGTTGATGTAACTCTGTCAACTCCAGTGAGAGTT
GGGAAGAGAGAGGGAACTAAAGGGGCTTGAACTTACTGGGCTATTTATCG
ACAAATTGATCAAACAAATGGGGTTGGGCATGGGGGATTACGCCTATTTT
TTCCTGGTTGTGTTGTCCCATTATCTCTGACACCAAGGTAAGAACGAACA
AAGTAATGTGCCACCGTGGGCGTACTTTGTGTAATTCGTTTATGTGTGAT
GTGTACTGTGTGTAAGCAGAAATGGATAAAAATACATATATATATATATA
TATATATGTTATATATGAAGTATGGACTCATCTTCTTTTTCTTGGCTTTT
TTTTTTTTTTTTTCCCATGCAGACGCTTGCGGGTTATGACAGTGACGAAT
GGGGGGAGCTTGAAGAGGACGACGATAGAGTGCAGGGACAATGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig241:439..10435-

>mRNA_H-paniculata_contig241.6525.1 ID=mRNA_H-paniculata_contig241.6525.1|Name=mRNA_H-paniculata_contig241.6525.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at H-paniculata_contig241:439..10435- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGCGCAAGAGACCTAGCACTGTGGTATCTCACATCTTCTGTGATTATCC
AGACCCAGCAAGTATGACGCGCAAGAGACCTAGCACTGTGGTATCTCACA
TCTTCTGTGATTATCCAGACCCAGCAAGTATGGGTCGGACAAAGAAATTC
ATCGACAAGAAGGAGGCGTCGACGTTCCACGTAGTGCACCGCTCTCAACA
GGACAAGGCAAAGGAGGGCGAAGAGGCGGCCTCCGAGTTCGTGCTCATCC
CATCTGGGGGTCGGACAAAGAAATTCATCGACAAGAAGGAGGCGTCGACG
TTCCACGTAGTGCACCGCTCTCAACAGGACAAGGCAAAGGAGGGCGAAGA
GGCGGCCTCCGAGTTCGTGCTCATCCCATCTGGGCCGAGCAGGGAAGAGC
GGGCGGCAAAGGAAGCTGGTGAGCGAGGCAGAAGGAATGGAACGGTGGGG
AAGGGAGCAGCAGTGCTGGGCGCTGATCGTGATCACATCAACGCCCTTGG
CCTACCTAACGATGGCTATGACTACGAGCAGCACTTCAAGTCCATGGCCG
AGCAGGGAAGAGCGGGCGGCAAAGGAAGCTGGTGAGCGAGGCAGAAGGAA
TGGAACGGTGGGGAAGGGAGCAGCAGTGCTGGGCGCTGATCGTGATCACA
TCAACGCCCTTGGCCTACCTAACGATGGCTATGACTACGAGCAGCACTTC
AAGTCCATGGGAGGAGGGACTTTCGTTTCAAAAACGGGGCGAGTGCAGCA
CTTTGCACAAGAGGGCAATGCTGGCGCGAGAGCGGGGGCCGGGGCAGGAA
GAATTTCCATCCCCGAGGCGGCGTTAGCGTCTGCAGAGACACTAGATCGA
CAATTGGAGGCGGTCACCATCAGTGAAAGAGGAGGGACTTTCGTTTCAAA
AACGGGGCGAGTGCAGCACTTTGCACAAGAGGGCAATGCTGGCGCGAGAG
CGGGGGCCGGGGCAGGAAGAATTTCCATCCCCGAGGCGGCGTTAGCGTCT
GCAGAGACACTAGATCGACAATTGGAGGCGGTCACCATCAGTGAAAAGGT
TATGGATGCCGACATGCGGCGAGCTTTGGCGGAAGGATTAGACGGGAACG
CGGAAGAATTTTCGGAGGAAAACGCGGACAACTGGTTGGATGATGACTTT
GTCCTGCAGGCGGCCGGCGCAGACGATAGGTTATGGATGCCGACATGCGG
CGAGCTTTGGCGGAAGGATTAGACGGGAACGCGGAAGAATTTTCGGAGGA
AAACGCGGACAACTGGTTGGATGATGACTTTGTCCTGCAGGCGGCCGGCG
CAGACGATGACGGCGGCTTTGACTTCGACGCTCACGTGGCGCGTCTCATG
GACGCAAGCGCCCGAGAGACCGGCCAACTGCGACAGCGCACTGCGGACGA
CAATCTACAGACCGAGGGCCTCGTGCGGCTGAGGCGATTAGAGGATGGCT
CTTCCTCGGACGAAGACGATTCTGATTCGGAATTGGATAACGACCACGGT
GGATCAGACGCCAGCGGGGAGTTCGACGAGAGTTTGTTGGAGGGATTGGT
TCTTGGCGACGGGGGTGGGGGGGGTGATGCAGCGGAGAGGGCAGTACTTG
ATGCACAGTTCGAGGCGGACGGCGGCTTTGACTTCGACGCTCACGTGGCG
CGTCTCATGGACGCAAGCGCCCGAGAGACCGGCCAACTGCGACAGCGCAC
TGCGGACGACAATCTACAGACCGAGGGCCTCGTGCGGCTGAGGCGATTAG
AGGATGGCTCTTCCTCGGACGAAGACGATTCTGATTCGGAATTGGATAAC
GACCACGGTGGATCAGACGCCAGCGGGGAGTTCGACGAGAGTTTGTTGGA
GGGATTGGTTCTTGGCGACGGGGGTGGGGGGGGTGATGCAGCGGAGAGGG
CAGTACTTGATGCACAGTTCGAGGCGACGCTTGCGGGTTATGACAGTGAC
GAATGGGGGGAGCTTGAAGAGGACGACGATAGAGTGCAGGGACAATGGTG
AACGCTTGCGGGTTATGACAGTGACGAATGGGGGGAGCTTGAAGAGGACG
ACGATAGAGTGCAGGGACAATGGTGA
back to top