mRNA_H-paniculata_contig2409.6522.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2409.6522.1
Unique NamemRNA_H-paniculata_contig2409.6522.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2409.6522.1 vs. uniprot
Match: D7G985_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G985_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 1.490e-8
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:   31 MVDVMGRRCAYEGCGKHPRYGVPGSKKRKFCAQHAEAGMIDVGMT 165
            M+DV+ +RC + GC K P YG  GSKKR+FCAQH++ GM+ +  T
Sbjct:    1 MIDVVCKRCGHLGCMKRPSYGTDGSKKREFCAQHSQQGMVSMANT 45
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BLAST of mRNA_H-paniculata_contig2409.6522.1 vs. uniprot
Match: D7FMW7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW7_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 3.960e-6
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:   43 MGRRCAYE-GCGKHPRYGVPGSKKRKFCAQHAEAGMIDV 156
            MG++C Y  GC K   +GVPGSKKR+FCA HA  GM+D+
Sbjct:    1 MGKKCTYPAGCPKQALFGVPGSKKREFCALHAIQGMVDI 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2409.6522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G985_ECTSI1.490e-853.33EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FMW7_ECTSI3.960e-658.97EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2409contigH-paniculata_contig2409:18930..21204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue6.6e-07
Seed eggNOG ortholog2880.D7G985
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size402
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2409.6522.1prot_H-paniculata_contig2409.6522.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2409 18930..21174 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.6727433-CDS-H-paniculata_contig2409:18929..191181622929692.6727433-CDS-H-paniculata_contig2409:18929..19118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 18930..19118 -
1691480969.5616257-CDS-H-paniculata_contig2409:18929..191181691480969.5616257-CDS-H-paniculata_contig2409:18929..19118Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 18930..19118 -
1622929692.6872795-CDS-H-paniculata_contig2409:19646..197211622929692.6872795-CDS-H-paniculata_contig2409:19646..19721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 19647..19721 -
1691480969.5712876-CDS-H-paniculata_contig2409:19646..197211691480969.5712876-CDS-H-paniculata_contig2409:19646..19721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 19647..19721 -
1622929692.7024467-CDS-H-paniculata_contig2409:21066..211741622929692.7024467-CDS-H-paniculata_contig2409:21066..21174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 21067..21174 -
1691480969.5820415-CDS-H-paniculata_contig2409:21066..211741691480969.5820415-CDS-H-paniculata_contig2409:21066..21174Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 21067..21174 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.719481-UTR-H-paniculata_contig2409:21174..212041622929692.719481-UTR-H-paniculata_contig2409:21174..21204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 21175..21204 -
1691480969.5956385-UTR-H-paniculata_contig2409:21174..212041691480969.5956385-UTR-H-paniculata_contig2409:21174..21204Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 21175..21204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2409.6522.1

>prot_H-paniculata_contig2409.6522.1 ID=prot_H-paniculata_contig2409.6522.1|Name=mRNA_H-paniculata_contig2409.6522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MVDVMGRRCAYEGCGKHPRYGVPGSKKRKFCAQHAEAGMIDVGMTTTCII
PNCKKQPSYGKEGSKRAEFCSKHAPSNTVNVRSNKCAHAGCKKQPSYGME
GQKKPVLCSEHAVEGMCNLKWKR*
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mRNA from alignment at H-paniculata_contig2409:18930..21204-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2409.6522.1 ID=mRNA_H-paniculata_contig2409.6522.1|Name=mRNA_H-paniculata_contig2409.6522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2275bp|location=Sequence derived from alignment at H-paniculata_contig2409:18930..21204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTATTGCTCGCATCACGCCCTGCCTGGCATGGTGGATGTGATGGGTCG
GCGCTGCGCCTACGAGGGTTGCGGGAAGCACCCGCGCTACGGTGTCCCTG
GTAGCAAAAAGAGAAAATTCTGCGCGCAGCACGCGGAGGTATGTCGTTGG
AGTATGACCTGTATACCTATGTCGATATAGGATGCAGAATCATTTTTAAT
TAATGCGGTAACGTCGCGAGAAGCGCCCACGCCACGGTGTGTGTCACTAC
AAAAGAAGAGGAAATTCTGCGCGAGGTATATGACGCCGCGGGGGGCTGAA
TTTTTTTCATAAAGATGGATTTTCTCGGAAACGGAGTCTACGTGTGTAGA
AAGAGAAAGTCATCGATAAACAGATGTTAATTGACAAGTATATGATCGCG
ACGAGATAGACCTTTTTGAACGACACAGCTTTCTGTGTTACTGCCTTTTC
AAGTAGCCGTTTCGGAATAGTTTTTTTTCAAGTTTGTACTTGTGTACCTG
CCCGAAATTCGGACCGGAAAAAAAATCGCCCCCGGGGGCGTTCTGACAGC
TCCCTGCGGGTATTACTGAGTCCGAATTAATTGCTACTGCAATGTTGGGG
TCTCAGAACAAGTTATCAAGTCTTTACATGTTAATTAACCTCTGAAGAAT
GAATCTTCGCTCTTGGAGGGCACTAAGCAGCACAGCCGTGGCTCTATCCA
CTCCATTAGTCCTTCATGACTAACTATTAGTGATGTTTGTCAGGCTGTTG
ATTCGGAACAGATTTTCAAGGCTGTAATCAAGTAATTTACCGAAAAAGAA
TCTAGATGAAGATCGTGTCTAAATGTAGGAGCGTAGCGAATAATCCTACG
TGGGTGGAGGACGAATTATTGGAGTATGACTGCACGGGCGTAGTCCATGA
CTTTTCTCAGTAGTATAGTAAATGATGCGGAAAGTACTTCCCACGTCGTA
AATAATTCGCGCCGAGTTAAGGCTTATCGTCAAAGTATTGAGAGAGATCG
GGCTCGGGACGAGTCGAGAGGGCCAACCTAAAGCTGTGATTGGACTGTAT
GTAATGTGTTTGAAAAAAATGACATTGTACGTGGTCTATGCCAAAACCGT
TTTGCTGGAGATTTGACGTTCGTTATTTCATGTACTGCGTAAAGGTGCAG
CTGGTTGGCTGTTTGGGTGGAAGCAATGCATTTCCATTGAGGTTGGCCGG
TTTTTTATGTAAATATTGTAAGGTAAGGGTTGGTGGCGTGAAGGGAGCTG
GTTACACGGTGACTCGTCTCGTAAGGACACCCCATTATTTTGTTTACAAA
ATATGTCATTCTTCAATGATTCAAAATATATATAGCCTCATTTTTCAAAG
GGATGATACTCGGAATGACAATTTTACGCTTTTATAATACAAGGGTAATT
TTAACCGTGCCCACTCTCCCATTCGCACCTCGTTTTTCGCGTTTGTCGAC
TCTGGAACAATGGATTATGACATGATGACTCAGGCGGGCATGATCGACGT
GGGCATGACGACGACTTGCATCATCCCCAACTGCAAGAAGCAGCCATCCT
ACGGCAAGGTAAAAACAATATATTTTTGAGAAACGTGTGAAATGAATGGA
TTTAAAGGTGATTGTAGTCTCACTATACAGGGAGAAGGATCCGAGATAAC
GGTGATGTTTGGTTCTTGTTGAGTTTCGCGAGTTTTTCGTTTTTCTGTTT
CGACAGATTTTATTTTTTATTTTTGTACCTGCTTGTGTTCGATTACACCT
TTCATGATTCAATATGTTTGTATGTATGTGTACACTAATAGTAAATATGC
CAGTGGCGCGTGAGTGACACTTTCTGATTTTTTTTTTTTTTTTTTTGGAT
AATGACTGGAAACCGTCCCAAGAGGAACGTGATGGAGTATGGTTATTTAC
GTATTGATATACAAATATGTCCTATTTTTTACCACTACTCTCATTTATTT
ATTGATTTATTGGTGCTTGTATTCATTCCTCCCTTTGCCCCCTCTCTCCC
CGGGTCCTTTCCTCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCGTTGTT
GTTTTTACTTGTTGATTTTTTTAAATTTCCGTTTAGGAGGGCAGCAAGAG
GGCGGAGTTTTGCTCGAAGCATGCTCCTAGTAACACCGTCAACGTTCGGA
GTAACAAGTGCGCACACGCAGGATGCAAAAAGCAACCTTCCTATGGCATG
GAGGGACAGAAGAAGCCCGTGCTGTGTTCGGAGCACGCGGTGGAGGGCAT
GTGCAACCTCAAGTGGAAGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2409:18930..21204-

>mRNA_H-paniculata_contig2409.6522.1 ID=mRNA_H-paniculata_contig2409.6522.1|Name=mRNA_H-paniculata_contig2409.6522.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig2409:18930..21204- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGGATGTGATGGGTCGGCGCTGCGCCTACGAGGGTTGCGGGAAGCA
CCCGCGCTACGGTGTCCCTGGTAGCAAAAAGAGAAAATTCTGCGCGCAGC
ACGCGGAGATGGTGGATGTGATGGGTCGGCGCTGCGCCTACGAGGGTTGC
GGGAAGCACCCGCGCTACGGTGTCCCTGGTAGCAAAAAGAGAAAATTCTG
CGCGCAGCACGCGGAGGCGGGCATGATCGACGTGGGCATGACGACGACTT
GCATCATCCCCAACTGCAAGAAGCAGCCATCCTACGGCAAGGCGGGCATG
ATCGACGTGGGCATGACGACGACTTGCATCATCCCCAACTGCAAGAAGCA
GCCATCCTACGGCAAGGAGGGCAGCAAGAGGGCGGAGTTTTGCTCGAAGC
ATGCTCCTAGTAACACCGTCAACGTTCGGAGTAACAAGTGCGCACACGCA
GGATGCAAAAAGCAACCTTCCTATGGCATGGAGGGACAGAAGAAGCCCGT
GCTGTGTTCGGAGCACGCGGTGGAGGGCATGTGCAACCTCAAGTGGAAGA
GGTAAGAGGGCAGCAAGAGGGCGGAGTTTTGCTCGAAGCATGCTCCTAGT
AACACCGTCAACGTTCGGAGTAACAAGTGCGCACACGCAGGATGCAAAAA
GCAACCTTCCTATGGCATGGAGGGACAGAAGAAGCCCGTGCTGTGTTCGG
AGCACGCGGTGGAGGGCATGTGCAACCTCAAGTGGAAGAGGTAA
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