mRNA_H-paniculata_contig24088.6520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24088.6520.1
Unique NamemRNA_H-paniculata_contig24088.6520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A397TNI1_9GLOM (Fe2OG dioxygenase domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TNI1_9GLOM)

HSP 1 Score: 85.5 bits (210), Expect = 2.870e-18
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 SFVNVLQEEVQDGCRAARFFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            SF+N+ QE +++ CR  +FFSLP + K +IP   GGFTRGYIG GGESGS RLE KEAFSYGY
Sbjct:   49 SFLNIDQERIKEACR--QFFSLPSNAKTSIPIKSGGFTRGYIGIGGESGSQRLEVKEAFSYGY 109          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A6H5KFT2_9PHAE (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.620e-16
Identity = 39/48 (81.25%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   46 AARFFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            A RFFSLP   K  IPA KGGFTRGYIGFGGESGSH  ECKEAFSYGY
Sbjct:   65 ARRFFSLPEAAKRKIPAKKGGFTRGYIGFGGESGSHLRECKEAFSYGY 112          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A2Z6QUS6_9GLOM (Fe2OG dioxygenase domain-containing protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QUS6_9GLOM)

HSP 1 Score: 78.6 bits (192), Expect = 1.050e-15
Identity = 40/63 (63.49%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 SFVNVLQEEVQDGCRAARFFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            S   + QE V++ CR  +FFSLP +IK +IP   GGFTRGYIG GGESGS  LE KEAFSYGY
Sbjct:   52 SLNTIDQELVKEACR--QFFSLPSNIKSSIPIKSGGFTRGYIGMGGESGSQMLEVKEAFSYGY 112          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: U9T0D7_RHIID (Fe2OG dioxygenase domain-containing protein n=7 Tax=Rhizophagus TaxID=1129544 RepID=U9T0D7_RHIID)

HSP 1 Score: 74.7 bits (182), Expect = 3.020e-14
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 SFVNVLQEEVQDGCRAARFFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            SF  + Q  +++ C+  +FFSLP +IK +IP   GGFTRGYIG GGESGS  LE KEAFSYGY
Sbjct:   52 SFNAIDQTLLKEACQ--QFFSLPSNIKSSIPIKSGGFTRGYIGMGGESGSQLLEVKEAFSYGY 112          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A397U6D6_9GLOM (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397U6D6_9GLOM)

HSP 1 Score: 70.5 bits (171), Expect = 4.770e-13
Identity = 37/63 (58.73%), Postives = 41/63 (65.08%), Query Frame = 1
Query:    1 SFVNVLQEEVQDGCRAARFFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            SF +  Q  + +  R  +FFSLP   K  IP   GGFTRGYIG G ESGSHR E KEAFSYGY
Sbjct:   28 SFQHRDQNHIFESSR--QFFSLPEEKKNTIPIKSGGFTRGYIGLGNESGSHRFEVKEAFSYGY 88          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A8H4A5N3_GIGMA (Clavaminate synthase-like protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4A5N3_GIGMA)

HSP 1 Score: 69.7 bits (169), Expect = 1.690e-12
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   52 RFFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            +FFSLP   K  IP   GGFTRGYIG G ESGSHR E KEAFSYGY
Sbjct:   65 QFFSLPEEKKNTIPIKSGGFTRGYIGLGNESGSHRFEVKEAFSYGY 110          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A0L0HJP3_SPIPD (Fe2OG dioxygenase domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HJP3_SPIPD)

HSP 1 Score: 67.4 bits (163), Expect = 1.280e-11
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   10 NVLQEEVQDGCRAAR-FFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            N+ +E  ++   AA+ FF+LP  IK  IP   GGFTRGYIG G ESGS  LE KEAFSYGY
Sbjct:   80 NLTREFRKEVFNAAQDFFNLPQDIKNKIPIRSGGFTRGYIGLGAESGSSALEVKEAFSYGY 140          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A507EEJ9_9FUNG (Fe2OG dioxygenase domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507EEJ9_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 8.080e-11
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   46 AARFFSLPIHIKENIPATKGGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            A  FF+LP  +K  IP   GGFTRGYI  GGESGS  +E KEAFSYGY
Sbjct:   67 AQEFFALPDDVKNKIPIRAGGFTRGYIPIGGESGSQAVEVKEAFSYGY 114          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A1Y1YF39_9FUNG (Clavaminate synthase-like protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YF39_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 4.940e-9
Identity = 32/49 (65.31%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   46 AARFFSLPIHIKENIPATK-GGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            A   F L    K+ +P  K GGFTRGYI FGGESGS RLE KEAFSYGY
Sbjct:   61 ARALFELERSEKDRLPLIKPGGFTRGYIPFGGESGSERLEVKEAFSYGY 109          
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Match: A0A812WGQ1_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WGQ1_9DINO)

HSP 1 Score: 58.2 bits (139), Expect = 2.440e-8
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   46 AARFFSLPIHIKENIPATK-GGFTRGYIGFGGESGSHRLECKEAFSYGY 189
            A    S P+ +K++ P+TK GGF RGYIG G ESGS R E KE FSYGY
Sbjct:   85 AKEMMSHPLEVKKDFPSTKKGGFVRGYIGEGEESGSERYELKEGFSYGY 133          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24088.6520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A397TNI1_9GLOM2.870e-1865.08Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5KFT2_9PHAE1.620e-1681.25Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A2Z6QUS6_9GLOM1.050e-1563.49Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
U9T0D7_RHIID3.020e-1460.32Fe2OG dioxygenase domain-containing protein n=7 Ta... [more]
A0A397U6D6_9GLOM4.770e-1358.73Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A8H4A5N3_GIGMA1.690e-1271.74Clavaminate synthase-like protein n=1 Tax=Gigaspor... [more]
A0A0L0HJP3_SPIPD1.280e-1159.02Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A507EEJ9_9FUNG8.080e-1164.58Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A1Y1YF39_9FUNG4.940e-965.31Clavaminate synthase-like protein n=1 Tax=Basidiob... [more]
A0A812WGQ1_9DINO2.440e-859.18Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24088contigH-paniculata_contig24088:3046..3620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score74.7
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog588596.U9T0D7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.non-haem dioxygenase in morphine synthesis N-terminal
EggNOG OGs3A0I9@33154,3Q34N@4751,COG3491@1,KOG0143@2759
COG Functional cat.Q
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.620916-CDS-H-paniculata_contig24088:3045..31841622929692.620916-CDS-H-paniculata_contig24088:3045..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24088 3046..3184 -
1691480969.5439093-CDS-H-paniculata_contig24088:3045..31841691480969.5439093-CDS-H-paniculata_contig24088:3045..3184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24088 3046..3184 -
1622929692.633401-CDS-H-paniculata_contig24088:3570..36201622929692.633401-CDS-H-paniculata_contig24088:3570..3620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24088 3571..3620 -
1691480969.5534108-CDS-H-paniculata_contig24088:3570..36201691480969.5534108-CDS-H-paniculata_contig24088:3570..3620Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24088 3571..3620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24088.6520.1prot_H-paniculata_contig24088.6520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24088 3046..3620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24088.6520.1

>prot_H-paniculata_contig24088.6520.1 ID=prot_H-paniculata_contig24088.6520.1|Name=mRNA_H-paniculata_contig24088.6520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
SFVNVLQEEVQDGCRAARFFSLPIHIKENIPATKGGFTRGYIGFGGESGS
HRLECKEAFSYGY
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mRNA from alignment at H-paniculata_contig24088:3046..3620-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24088.6520.1 ID=mRNA_H-paniculata_contig24088.6520.1|Name=mRNA_H-paniculata_contig24088.6520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=575bp|location=Sequence derived from alignment at H-paniculata_contig24088:3046..3620- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTTGTAAACGTTCTCCAAGAAGAGGTTCAGGATGGTTGTCGTGCGGC GTTGCTATTTTGTCATGAAACACATTCCTAATAAGCTCATCAAAGCTTGG AACATACGTTGCTACCTACATACAGACGCGTTAGCGAGATGAAAAAAAAA AAAAAGTCACACTTAGACAGGCCAAAAGAAAACGCCCAGATGCACAGCAT AGATACAGTACATGTGAGTGGCTGTACCAAATGAAAGATAGATCTCCGAA GACCCGATACGACACTGGAGTTAGTTCGCTGGCAACTACAACAACAACAC GCTGCACCAAAATCAACTGCGAGGTGTTCTTTTTTGCTCCTGACAGTGCA TTGCTCCCAACTCATGCATACAGAGAGGCTCAATGTTCAATGTTGCCGCT GCTATGAACGCTCAACATGTTGCAAACGATGAACAGACGGTTCTTCTCGT TGCCTATCCATATTAAGGAGAACATCCCCGCGACAAAGGGGGGATTTACG AGGGGATACATCGGATTCGGAGGAGAGAGTGGATCGCATCGTCTAGAATG CAAGGAAGCTTTCAGCTACGGGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig24088:3046..3620-

>mRNA_H-paniculata_contig24088.6520.1 ID=mRNA_H-paniculata_contig24088.6520.1|Name=mRNA_H-paniculata_contig24088.6520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig24088:3046..3620- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTTTGTAAACGTTCTCCAAGAAGAGGTTCAGGATGGTTGTCGTGCGGC
TCTTTTGTAAACGTTCTCCAAGAAGAGGTTCAGGATGGTTGTCGTGCGGC
ACGGTTCTTCTCGTTGCCTATCCATATTAAGGAGAACATCCCCGCGACAA
AGGGGGGATTTACGAGGGGATACATCGGATTCGGAGGAGAGAGTGGATCG
CATCGTCTAGAATGCAAGGAAGCTTTCAGCTACGGGTACACGGTTCTTCT
CGTTGCCTATCCATATTAAGGAGAACATCCCCGCGACAAAGGGGGGATTT
ACGAGGGGATACATCGGATTCGGAGGAGAGAGTGGATCGCATCGTCTAGA
ATGCAAGGAAGCTTTCAGCTACGGGTAC
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