mRNA_H-paniculata_contig24070.6515.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24070.6515.1
Unique NamemRNA_H-paniculata_contig24070.6515.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: D8LJA1_ECTSI (Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJA1_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 4.340e-97
Identity = 157/210 (74.76%), Postives = 172/210 (81.90%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPI--SGERQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            FLG E+SP F  VEP   +G RQ+M VG GAAKIRP+VVCAVLRGV+F+  SYKSFMDLQDKLHQNICRRRTL +IG HDL+TVKGPFRYDAVPPSDI FVPLTPS+QG F AKALLD YNTD S KHLKPYTPIIY+SE            VYPV+ DA G+VLSLPPVINGHLSRIRLETTDV IE TATDL KAN+VLDT+V MFS+
Sbjct:   91 FLGKEDSPVFRTVEPAGGAGARQKMTVGSGAAKIRPYVVCAVLRGVTFNSKSYKSFMDLQDKLHQNICRRRTLVAIGAHDLNTVKGPFRYDAVPPSDIDFVPLTPSDQGTFNAKALLDLYNTDPSVKHLKPYTPIIYESE------------VYPVIKDANGDVLSLPPVINGHLSRIRLETTDVFIECTATDLTKANIVLDTMVTMFSE 288          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: A0A835YVN2_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN2_9STRA)

HSP 1 Score: 263 bits (671), Expect = 3.270e-81
Identity = 137/208 (65.87%), Postives = 157/208 (75.48%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGERQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            FLG    P F  VEP SG+RQ + V P  A+IRP+VVCAVLRGV+FD  +YKSF+DLQDKLHQNICRRRTL +IGTHDL T++GPF Y+A+PP DI FVPL P ++GAF+AKALLD YNTD + KHLKPYT IIYDS             VYPVV DA   V SLPPVING+ SRI+  T +V IE TATDL KAN+VLDTVVAMFSQ
Sbjct:   78 FLGRASPPDFRLVEPASGQRQTITVKPSTAQIRPYVVCAVLRGVTFDARTYKSFIDLQDKLHQNICRRRTLVAIGTHDLDTLEGPFTYEALPPQDIEFVPLVPCDRGAFKAKALLDLYNTDVAVKHLKPYTGIIYDSP------------VYPVVLDARRTVCSLPPVINGYHSRIQQTTRNVFIECTATDLTKANIVLDTVVAMFSQ 273          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: A0A482RVT2_9ARCH (Phenylalanine--tRNA ligase subunit beta (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVT2_9ARCH)

HSP 1 Score: 216 bits (550), Expect = 3.960e-68
Identity = 116/207 (56.04%), Postives = 139/207 (67.15%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGERQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFS 621
            F G++ +P +  ++  S     M V P   +IRP VVCAVLRGV FD   YKSF+DLQ+KLHQNICR+R+  +IGTHDL T++GPFRY A+ P DI FVPLT  +  +F  K LLD Y  D S KHLKPYT +IY S             VYPV+ D  G VLSLPP+ING  SRI L T ++ IE TATDL KAN+VLDTVVAMFS
Sbjct:   11 FQGLQAAPVYKVLKS-SETPLVMSVDPSVQQIRPFVVCAVLRGVQFDVKRYKSFIDLQEKLHQNICRKRSYVAIGTHDLDTIEGPFRYAALSPEDIEFVPLTADDGRSFTGKELLDFYREDPSVKHLKPYTDLIYSSP------------VYPVIYDNQGRVLSLPPIINGRHSRITLHTRNIFIECTATDLTKANIVLDTVVAMFS 204          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: A0A7S1U5G5_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5G5_9STRA)

HSP 1 Score: 230 bits (586), Expect = 4.480e-68
Identity = 122/210 (58.10%), Postives = 145/210 (69.05%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGE--RQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            FLG + +P +  +EP +G   R  M V    A +RPHVVCAVLRGV+F P  Y+SF++LQDKLHQNICRRRTL +IGTHDL+T+  PFRY A+PP+DI FVPLT   + +F+ KALLD Y TD   KHL PY  IIYD               YPV+ DA   VLSLPP+ING  SRIRL+T DV IE TATD  KAN+VLDTVV MFS+
Sbjct:  120 FLGTQPAPTYEVLEPAAGAGARLAMTVEAPTAGVRPHVVCAVLRGVTFTPKRYQSFIELQDKLHQNICRRRTLVAIGTHDLATLTPPFRYRALPPTDINFVPLT-EEERSFDGKALLDHYKTDGQCKHLAPYVDIIYDEPN------------YPVIYDAEDRVLSLPPIINGRHSRIRLDTRDVFIECTATDYTKANIVLDTVVTMFSE 316          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: W7TXC3_9STRA (Phenylalanine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXC3_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.490e-65
Identity = 117/210 (55.71%), Postives = 143/210 (68.10%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPIS--GERQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            FL ++++P++  VEP    G R  M V    A +RP V CA+LR ++FDP+ YKSF+DLQ+ LH+NICRRRTL +IGTHDL T++GPFRY A  P+ I F PLT  +   F AK LLD Y TD SAKHL PYT IIY++              YPV+ D+ G VLSLPPVING  SRI L+T +V IE TATD  KAN+VLDTVV MFSQ
Sbjct:   88 FLELDKAPSYRKVEPTDNGGTRTVMSVEASTASVRPFVACAILRDMTFDPLVYKSFIDLQEHLHRNICRRRTLVAIGTHDLDTLRGPFRYTAADPASIQFSPLTSDDGRVFNAKELLDFYRTDESAKHLSPYTDIIYEAPR------------YPVLYDSRGTVLSLPPVINGRHSRITLQTRNVFIECTATDKTKANIVLDTVVTMFSQ 285          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: A0A7S3PY32_9STRA (Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PY32_9STRA)

HSP 1 Score: 221 bits (563), Expect = 3.530e-65
Identity = 117/209 (55.98%), Postives = 146/209 (69.86%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGERQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQG-AFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            FLG  ++P +  ++    + + M V P  A+IRP VVCA+LR V+F    YKSF++LQD+LH+N+CR+RTL +IGTHDL TVKGPF YDA P +DI FVPLT S+ G +F AKALL+ Y T+ + KHLKPY PII DS             VYPVV D +  VLSLPP+ING  S+I L T +V IE TATDL KAN+VLDTVV MFS+
Sbjct:  103 FLGDMDAPTYEVIDVPEADMEVMTVKPATAQIRPFVVCAILRDVTFTEQRYKSFIELQDQLHRNLCRQRTLVAIGTHDLDTVKGPFAYDARPGTDIEFVPLTHSSSGESFNAKALLEHYETEVACKHLKPYVPIIKDSP------------VYPVVLDGSETVLSLPPIINGDKSKITLGTKNVFIECTATDLTKANIVLDTVVTMFSE 299          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: A0A7S2BP41_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BP41_9STRA)

HSP 1 Score: 207 bits (528), Expect = 1.820e-63
Identity = 114/205 (55.61%), Postives = 139/205 (67.80%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGERQQMIVGPGAAKI--RPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVV 609
            F G++ +P +  +EP   + Q M V     K   RP VV AVLRG++FD  +YKSF+DLQDKLHQNICR R L +IGTHDL T++GPF YDA    DI+ VPLT ++     AK LLD YNTD   KHLKPYT +IYDSE             YP++TDA G VLS+PP+INGH SRI+L T +VLIE TATD  KA++VLDTVV
Sbjct:  109 FKGLDPAPTYRMLEP--EQPQVMRVKSANCKTVPRPFVVSAVLRGMTFDEKAYKSFIDLQDKLHQNICRERKLVAIGTHDLDTIEGPFTYDAPLREDISLVPLTTTDGQPVGAKDLLDHYNTDEGCKHLKPYTKLIYDSER------------YPLITDAKGTVLSMPPIINGHHSRIQLHTKNVLIEATATDHTKAHIVLDTVV 299          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: A0A8K1FBR6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBR6_PYTOL)

HSP 1 Score: 215 bits (547), Expect = 4.690e-63
Identity = 115/208 (55.29%), Postives = 141/208 (67.79%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGERQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            FL  E+ P +  V P +G  QQ+ V P    IRP VV A+LR V F    Y SF+DLQDKLHQNICRRRTL +IGTHDL T++GPF Y+A+ P  I FVPL+ + +  F+AK LLD Y T+   KHLKPYT IIYDS             VYPV+TD  G VLSLPP+ING  S+I + T +V IE TATD+ KA+VVL+TV+AMFS+
Sbjct:   88 FLQKEKPPQYKLVPPATGAPQQVTVKPSTKSIRPFVVSAILRNVKFTQERYDSFIDLQDKLHQNICRRRTLVAIGTHDLDTIEGPFTYNALSPDQIKFVPLSQTRE--FQAKELLDFYRTNVEVKHLKPYTDIIYDSP------------VYPVITDKNGVVLSLPPIINGEHSKITINTKNVFIECTATDITKAHVVLNTVIAMFSE 281          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: K0SRH2_THAOC (Phenylalanine--tRNA ligase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SRH2_THAOC)

HSP 1 Score: 214 bits (546), Expect = 9.730e-63
Identity = 112/210 (53.33%), Postives = 148/210 (70.48%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGERQQM-IVGPGAAKIRPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGA-FEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            FLG  ++P++  +EP       M +V      +RP+VVCAVLR V+FDP  Y+SF++LQD+LH+N+CR+RTL +IGTHDL +V+GPF YDA  P +I FVPLT +++G  F+ + L++ Y T+ + KHLKPY PII DS             +YPVV D+ G VLSLPP+ING  SRI L+T +V IE TATDL KAN+VLDTVVAMFS+
Sbjct:   91 FLGDMDAPSYEVLEPSHEASSTMTVVQANVDTVRPYVVCAVLRDVTFDPERYQSFIELQDQLHRNLCRQRTLVAIGTHDLDSVRGPFTYDARAPGEIKFVPLTHTDEGREFDGRELMEHYETEPACKHLKPYVPIIKDSP------------LYPVVLDSEGTVLSLPPIINGSKSRITLDTKNVFIECTATDLTKANIVLDTVVAMFSE 288          
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Match: A0A7S2BNL5_9STRA (Phenylalanine--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNL5_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.230e-62
Identity = 117/210 (55.71%), Postives = 143/210 (68.10%), Query Frame = 1
Query:    1 FLGMEESPAFHAVEPISGERQQMIVGPGAAKI--RPHVVCAVLRGVSFDPMSYKSFMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTPSNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYPVVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVVAMFSQ 624
            F G++ +P +  +EP   + Q M V     K   RP VV AVLRG++FD  +YKSF+DLQDKLHQNICR R L +IGTHDL T++GPF YDA    DI+ VPLT ++     AK LLD YNTD   KHLKPYT +IYDSE             YP++TDA G VLS+PP+INGH SRI+L T +VLIE TATD  KA++VLDTVV MFS+
Sbjct:  109 FKGLDPAPTYRMLEP--EQPQVMRVKSANCKTVPRPFVVSAVLRGMTFDEKAYKSFIDLQDKLHQNICRERKLVAIGTHDLDTIEGPFTYDAPLREDISLVPLTTTDGQPVGAKDLLDHYNTDEGCKHLKPYTKLIYDSER------------YPLITDAKGTVLSMPPIINGHHSRIQLHTKNVLIEATATDHTKAHIVLDTVVTMFSE 304          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24070.6515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJA1_ECTSI4.340e-9774.76Phenylalanine--tRNA ligase n=2 Tax=Ectocarpus TaxI... [more]
A0A835YVN2_9STRA3.270e-8165.87Phenylalanine--tRNA ligase n=1 Tax=Tribonema minus... [more]
A0A482RVT2_9ARCH3.960e-6856.04Phenylalanine--tRNA ligase subunit beta (Fragment)... [more]
A0A7S1U5G5_9STRA4.480e-6858.10Phenylalanine--tRNA ligase n=1 Tax=Phaeomonas parv... [more]
W7TXC3_9STRA2.490e-6555.71Phenylalanine--tRNA ligase n=2 Tax=Monodopsidaceae... [more]
A0A7S3PY32_9STRA3.530e-6555.98Phenylalanine--tRNA ligase (Fragment) n=1 Tax=Chae... [more]
A0A7S2BP41_9STRA1.820e-6355.61Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8K1FBR6_PYTOL4.690e-6355.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K0SRH2_THAOC9.730e-6353.33Phenylalanine--tRNA ligase n=1 Tax=Thalassiosira o... [more]
A0A7S2BNL5_9STRA1.230e-6255.71Phenylalanine--tRNA ligase n=1 Tax=Dictyocha specu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24070contigH-paniculata_contig24070:308..2874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score299.3
Seed ortholog evalue1.4e-78
Seed eggNOG ortholog2880.D8LJA1
KEGG rclassRC00055,RC00523
KEGG koko:K01890
KEGG ReactionR03660
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phenylalanine-tRNA ligase activity
EggNOG OGsCOG0072@1,KOG2472@2759
Ec32 ortholog descriptionDNA binding domain, putative
Ec32 orthologEc-02_005310.1
EC6.1.1.20
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons4
Model size624
Cds size615
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24070.6515.1prot_H-paniculata_contig24070.6515.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24070 317..2874 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.2626317-UTR-H-paniculata_contig24070:307..3161622929691.2626317-UTR-H-paniculata_contig24070:307..316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24070 308..316 +
1691480969.135751-UTR-H-paniculata_contig24070:307..3161691480969.135751-UTR-H-paniculata_contig24070:307..316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24070 308..316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929691.2810664-CDS-H-paniculata_contig24070:316..4811622929691.2810664-CDS-H-paniculata_contig24070:316..481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 317..481 +
1691480969.146642-CDS-H-paniculata_contig24070:316..4811691480969.146642-CDS-H-paniculata_contig24070:316..481Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 317..481 +
1622929691.2937634-CDS-H-paniculata_contig24070:946..10901622929691.2937634-CDS-H-paniculata_contig24070:946..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 947..1090 +
1691480969.1549664-CDS-H-paniculata_contig24070:946..10901691480969.1549664-CDS-H-paniculata_contig24070:946..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 947..1090 +
1622929691.3089569-CDS-H-paniculata_contig24070:1692..18241622929691.3089569-CDS-H-paniculata_contig24070:1692..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 1693..1824 +
1691480969.164098-CDS-H-paniculata_contig24070:1692..18241691480969.164098-CDS-H-paniculata_contig24070:1692..1824Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 1693..1824 +
1622929691.3266861-CDS-H-paniculata_contig24070:2700..28741622929691.3266861-CDS-H-paniculata_contig24070:2700..2874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 2701..2874 +
1691480969.174037-CDS-H-paniculata_contig24070:2700..28741691480969.174037-CDS-H-paniculata_contig24070:2700..2874Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24070 2701..2874 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24070.6515.1

>prot_H-paniculata_contig24070.6515.1 ID=prot_H-paniculata_contig24070.6515.1|Name=mRNA_H-paniculata_contig24070.6515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp
MEESPAFHAVEPISGERQQMIVGPGAAKIRPHVVCAVLRGVSFDPMSYKS
FMDLQDKLHQNICRRRTLASIGTHDLSTVKGPFRYDAVPPSDITFVPLTP
SNQGAFEAKALLDRYNTDHSAKHLKPYTPIIYDSEACYGSFWLLWCCVYP
VVTDAAGEVLSLPPVINGHLSRIRLETTDVLIEVTATDLKKANVVLDTVV
AMFSQ
back to top

mRNA from alignment at H-paniculata_contig24070:308..2874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24070.6515.1 ID=mRNA_H-paniculata_contig24070.6515.1|Name=mRNA_H-paniculata_contig24070.6515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2567bp|location=Sequence derived from alignment at H-paniculata_contig24070:308..2874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCTTAGGAATGGAGGAATCGCCCGCGTTTCATGCGGTAGAACCCATTTC CGGAGAACGCCAGCAAATGATCGTAGGGCCTGGAGCGGCTAAAATCCGCC CTCACGTGGTTTGCGCCGTCCTGCGAGGGGTGTCCTTCGACCCTATGAGC TACAAGAGCTTCATGGACTTGCAGGTACGGACGGAAGCGACTTATGTGCA ATGCACCAAGACAGAGTTTTTTTATATACGGTGAGGTAGCTTCGCGGTTG GTTGATAAATTATATACAGTGCATCCTAAATAGAGCTGGGTATACGCAGC GAAGCAGCCCTGGCTGTTGGGCTCAACGGTCACTTTCTGTTTATCCTGGA GACAGTATCTGTCATCTTTACTAGTGCCACACAGAAAGTATACATGTACG ACACGTGAAAAATACAGTTTTAACTTCAACTTCAACTCAATTTTATTCTA CGTTGAACTTTGAGTCTAATCCTCAATAGTGTTAATATATATCTATATAT ATCTACATATTATTTTCTATCGCTCACATGTTCCTATTAACATGTTAGGG TTCCCTGGCGTCACGGGTGGGCTGTGGTTGGTGCGTGCGGTGACGTTATT TATTTTTTTGTCGAATCGACTTTTCACGTTTTTGTACAGGATAAGCTCCA CCAGAACATCTGCCGGCGGCGTACGCTGGCTTCCATCGGAACGCATGACC TCTCGACAGTCAAAGGACCCTTCAGATATGATGCCGTCCCGCCATCGGAC ATCACGTTTGTACCGCTTACGCCCAGCAATCAGGTGCGCATTTTTTATTT TCTTGTCTGGATTGTAACGCTGTGGCAGGCGTTATCTGTAAAATGGCCGC ACACCCGGCGTAGCTGTAAAATGTACGAATTGTTATCCTCCAGAAAACAA TAAAATATTTACTGTTGGGGGGGGGAGAGGGGGGATGGCTGGCAGCGGTT AAGTACCGTTCGGAACTAGTAGGGGCCGTGCTAAACGAACGAATGAGCCT GAGTTTCCGTCCTTGGAGTTTTGTTTGAGATTTTAAATAATACCGCAGCC ATCGCATTCGGAAATCCATGCTGATGTGATTTTCCGTGTTCCGATATTCG TGCCATGACTGCGGTATACAAAATCTCAAGTGAAAATCAGAAACCCGAAA ATTGTGCTGGCTCTTCTATTAAGAAGACTTTTACCCAGGGTTTCGGAAAG ATTGATTCGCCGATGTCATCTTGGGGTCCTCGGCGCATCATGTGTCGATC CTCATCTTGTGCCAGCGAAGTGACCGTGAATGTAGTCGATGCGACTGGTG GTGTGATGCTGTTGTGCGGTATGTGCTGTATTTCGTCTTTTTGTGTCATT TATTTTTTGTATTTCTGCGTTGTTTTTCGCAACAGGGCGCGTTCGAGGCG AAGGCGCTGCTGGATCGTTACAACACAGACCATTCTGCCAAACATCTCAA GCCCTACACTCCCATCATTTACGACAGCGAGGCATGTTACGGTAGTTTTT GGTTGTTGTGGTGCTGTGTTGAGCATAATGCATCTTGGAATCGTGTAGAT TCCCCGAGAGGAGAGGGTCGCGTGTTGGGTTGGAAATCCGACAATGCGAG AGAATCCGTCAGAAATCAACATATGTTACTTTTGTGTTAACTGACATGTA CACGGCGGCTCATCAAGTGCTCGTAGGACAGAATTCTCCTCCACCTACCG GATAGAACCTGTCCACATGACAGCTTTTATAACCGCCTCCGACTGTGCGG CAGTGGCTGGCCGGCACTACTTCGCGTTGTCCGCACCCACTGCCAACAGA CGACGAGTCGCAGAGAGGAGGGGGGAGAGGAGGGGCGGGGCGATTGATTG CTACCTTTTTGACGTCGACAACAACAACAACGGCAATAATTAGGCATATT TTTGCCTTTGGAAGTATGTATATAATTCAGTAGCACAAATTGCTGAAGGG GGACTCGCTCGACCGTAATGTTTGGTGATCCGTGTTTTCGTTTGAGATTA TTCGCAGTAATGAACAGCGAAAAGTACCCTTTCCGGTCCAAACAGTAACC CCTCTTGAGTAAGACCGAATTATTCCAAACGTGTGGAATTGACGGCCCAG GGCTCGGGAGGGCGGGAGGGCGGGGTGGCCTGCGTGGGATTGGTGAAAAA AAAAAAAAGAATGGAAAACGACCAGTGCAAAATGAGTAGACGGACTACAA ATGGACCATCATGGCGGTGAATGTATTCAGCATCTGTATACAGGCGGTGT CGTGTACGCCCAGATCTTTTTCCCTTTCGATGCGTTTGGCATAGTTCTTC TGTGGTCCGTTTGGCACTGTGGTGTCAAAGGGGTTCGTTAACTTCCACTT TTTTTTTTCTTTTTCTTTTTCGTGACAACAATGAAATGATCAGGTGTACC CCGTGGTGACCGATGCCGCGGGCGAAGTGTTGTCATTGCCTCCTGTCATC AACGGCCACCTCAGTCGCATTCGACTGGAAACCACGGACGTGTTGATCGA GGTCACGGCTACGGATCTCAAGAAGGCCAACGTCGTGCTCGACACGGTGG TTGCCATGTTCAGCCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig24070:308..2874+

>mRNA_H-paniculata_contig24070.6515.1 ID=mRNA_H-paniculata_contig24070.6515.1|Name=mRNA_H-paniculata_contig24070.6515.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig24070:308..2874+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAATCGCCCGCGTTTCATGCGGTAGAACCCATTTCCGGAGAACG
CCAGCAAATGATCGTAGGGCCTGGAGCGGCTAAAATCCGCCCTCACGTGG
TTTGCGCCGTCCTGCGAGGGGTGTCCTTCGACCCTATGAGCTACAAGAGC
TTCATGGACTTGCAGATGGAGGAATCGCCCGCGTTTCATGCGGTAGAACC
CATTTCCGGAGAACGCCAGCAAATGATCGTAGGGCCTGGAGCGGCTAAAA
TCCGCCCTCACGTGGTTTGCGCCGTCCTGCGAGGGGTGTCCTTCGACCCT
ATGAGCTACAAGAGCTTCATGGACTTGCAGGATAAGCTCCACCAGAACAT
CTGCCGGCGGCGTACGCTGGCTTCCATCGGAACGCATGACCTCTCGACAG
TCAAAGGACCCTTCAGATATGATGCCGTCCCGCCATCGGACATCACGTTT
GTACCGCTTACGCCCAGCAATCAGGATAAGCTCCACCAGAACATCTGCCG
GCGGCGTACGCTGGCTTCCATCGGAACGCATGACCTCTCGACAGTCAAAG
GACCCTTCAGATATGATGCCGTCCCGCCATCGGACATCACGTTTGTACCG
CTTACGCCCAGCAATCAGGGCGCGTTCGAGGCGAAGGCGCTGCTGGATCG
TTACAACACAGACCATTCTGCCAAACATCTCAAGCCCTACACTCCCATCA
TTTACGACAGCGAGGCATGTTACGGTAGTTTTTGGTTGTTGTGGTGCTGT
GGCGCGTTCGAGGCGAAGGCGCTGCTGGATCGTTACAACACAGACCATTC
TGCCAAACATCTCAAGCCCTACACTCCCATCATTTACGACAGCGAGGCAT
GTTACGGTAGTTTTTGGTTGTTGTGGTGCTGTGTGTACCCCGTGGTGACC
GATGCCGCGGGCGAAGTGTTGTCATTGCCTCCTGTCATCAACGGCCACCT
CAGTCGCATTCGACTGGAAACCACGGACGTGTTGATCGAGGTCACGGCTA
CGGATCTCAAGAAGGCCAACGTCGTGCTCGACACGGTGGTTGCCATGTTC
AGCCAGGTGTACCCCGTGGTGACCGATGCCGCGGGCGAAGTGTTGTCATT
GCCTCCTGTCATCAACGGCCACCTCAGTCGCATTCGACTGGAAACCACGG
ACGTGTTGATCGAGGTCACGGCTACGGATCTCAAGAAGGCCAACGTCGTG
CTCGACACGGTGGTTGCCATGTTCAGCCAG
back to top