mRNA_H-paniculata_contig24056.6512.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5JPV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV6_9PHAE) HSP 1 Score: 233 bits (594), Expect = 2.830e-66 Identity = 129/333 (38.74%), Postives = 197/333 (59.16%), Query Frame = 1
Query: 4 WAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKE---------STTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQ-LDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 972
W V+ LDV AFLN VY + APG E+ PTTG+ V L+KS+YG+ QSP++WN I++ L G+ T SDPC+Y S D +L+++VDDILITG +++ + +LM+ F +TD+GEV ++G+EV R+ + GTL +SQ Y +L+R+GM ANP TPG + +T LL T+ STTG +FFL GL+ + ++ + + A +T EAEL AL+ A++ Y+ N +GF+ + + SD+ GAL +A+N+ +S+R+KHIA+RF LR+ + + + + H SA + D + R F LR
Sbjct: 97 WEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGMSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILTIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDTQRFQAIIGSLLSTTGYLFFLGGGLISYGAKARTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFETFRSVPINSDSTGALTVASNAMFSSRTKHIALRF-FLRELTKGHWITLHHRHSATMIPDSEDRKRSREEFVALR 428
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 207 bits (528), Expect = 3.400e-57 Identity = 141/382 (36.91%), Postives = 202/382 (52.88%), Query Frame = 1
Query: 4 WAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLA-----------NGLVHFSSR------------LQKITAT------------------------------STT----EAELIALAACAKQGTYLLNICR*LGFQ-LDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQL 969
W V+ +DV VAFL + + V+ K APG + P TG V L++S+YGL QSP +W TID L +GF PT SDPC+Y GS DT ++L+L+V+DILI+G L+ D++ +L ++F ITD+GEV LILGM+V R+ + GTL +SQ YV S+LE GM + NP P + LL A +K +S TG++ +LA N L S+ L+ I T STT E+EL A++ AK+ YL ++ L F+ L + SD+ G L LAAN+ +S+R+KHIA+RF L++ I+ + + HV + LADI TKH +R F +
Sbjct: 483 WPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNP---PADE-----------LLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQVESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSI 850
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5K066_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K066_9PHAE) HSP 1 Score: 186 bits (471), Expect = 1.490e-52 Identity = 107/308 (34.74%), Postives = 172/308 (55.84%), Query Frame = 1
Query: 1 DWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQ-LDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQL 921
+W ++ LDV AFLN VY + APG + TG+P V L++S+YGL QSP +WN T+D L G+ T SDPC+Y S + ++L+++VDDILI G +L+ + +L ++F +TD+GEV +LG++V RN ++GTL + + S +R G+ +K + T +D L LA GL+ + ++ Q +TA ST EAE+ AL A++ Y+ N+ L F+ + + SD+ GAL +A N+ +S R+KH+A+R+ +R+ + Q+ + H S QL
Sbjct: 80 NWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILIIGGDQQLVDQKKKELTDRFEMTDMGEVKRVLGIDVQRNYEQGTLAIHR-----STTQRGGLH---------LKFNDGTQLQDLRXL---------------LAGGLISYGAKAQALTAQSTVEAEIQALGYSAREAVYISNLMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQL 358
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE) HSP 1 Score: 196 bits (497), Expect = 1.840e-52 Identity = 120/348 (34.48%), Postives = 188/348 (54.02%), Query Frame = 1
Query: 4 WAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATK--ESTTGTMFFLANGLVHF--------------SSRLQKITA--------------TSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVR--SDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCER 951
W++F +D+ AFL ++ E+V +Q PGFE + G VM L+KS+YGL QSP+ W HTID L +GF P SD C+Y +D + L+L+VDD+L+ G +++ ++N+L + +TD+GEV L+LGME+ R+R +GTL SQ Y S+LERFGMS PT TPG ++ + + TLL T+ + G + ++A L + S++ + A T TTE +LIA K+ + N+ LGF + +V DN LH N ++S+ +K IA+RF +R+ + ++ I ++ + +ADI TKH +
Sbjct: 861 WSLFQMDLSTAFLCADILENVLVEQPPGFE-VNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGTTDLRTRTTE-KLIASVLAMKEAVFCSNMVSELGFGKEFAQVPLYCDNTATLHALGNRSFSSSTKRIALRFLYIRELVSEGRMSIHYIPTDSNIADIGTKHLNK 1206
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A438CHB0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CHB0_VITVI) HSP 1 Score: 178 bits (451), Expect = 8.670e-50 Identity = 115/318 (36.16%), Postives = 171/318 (53.77%), Query Frame = 1
Query: 1 DWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGE-DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFE----VRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
D + +DV+ AFLNG + E++Y Q FE + + V LKKSIYGL+Q+ W D + S GF D CIY K S +I+L L+VDDIL+ LL + + L +KF + DLG+ S +LG+++ R+R G L+LSQ Y+ VL RFGMS+ P T K D + + LD + ST+ +F LA V + S Q + A+ST EAE IA + G +L N L +D E + DN A + N+ S++S HI I+F +++ ++S Q+ I+H+++ +AD LTK
Sbjct: 8 DLELHQMDVKTAFLNGNIDETIYMVQPENFESNN---SKQLVCRLKKSIYGLKQASRQWYRKFDQMITSFGFKENTVDQCIYLKFSGSKFIILVLYVDDILLASSDVGLLHETKRFLSSKFDMKDLGDASFVLGIQIYRDRPRGILRLSQKAYIDKVLSRFGMSNCAPGNTHVAKGDKFSLHQCPKNELDN---RRSTSSYIFMLAGEAVSWKSVKQTLIASSTMEAEFIACYEASNHGIWLRNFITRLRI-VDGVEKPLRINCDNKAAELYSKNNRSSSKSNHIDIKFLVVKERVQSLQVSIEHISTNSMIADPLTK 318
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A2N9GVZ5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GVZ5_FAGSY) HSP 1 Score: 184 bits (466), Expect = 2.490e-48 Identity = 123/367 (33.51%), Postives = 181/367 (49.32%), Query Frame = 1
Query: 19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP-------------------------GVKT----------------------------------DPTTTGE-DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
LDV+ AFL+G+L+E +Y Q GF + V L+KS+YGL+Q+P W D+ + S GFT +D C Y K +++YI+L L+VDD+LI G + + + +++ QL +F + DLG ILGM ++R+R GTL+LSQ +YV +L RF M A P TP GV + D TG DS L T++STTG ++ L V + SRLQKI A STTEAE +A+ K+ +L LG + + SD+ A+ LA N + +R+KHI +R+ +R + QL ++ + A AD+LTK
Sbjct: 825 LDVKTAFLHGDLEEDIYMSQPQGFIVQGK---ENLVCKLRKSLYGLKQAPRQWYKKFDSFMYSTGFTRCQADHCCYVKSFDNSYIILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGPAKQILGMRIIRDRANGTLKLSQTEYVKKILSRFSMDEAKPVSTPLGSHFRLTKDQSPKTEQEQALHEQVGVVSRYMSNPGKQHWEAVKWILRYLKGTLGTSLCFTGADMKLTGYVDSDLAGDVDTRKSTTGYVYTLGGTAVSWVSRLQKIVALSTTEAEYVAVTEAGKEMVWLQGFLEELGQRQKKGILHSDSQSAIFLAKNPAFHSRTKHIQLRYHFIRSLLDGGQLTLEKILGAKNPADMLTK 1188
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A2N9JBD5_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9JBD5_FAGSY) HSP 1 Score: 184 bits (466), Expect = 2.650e-48 Identity = 123/367 (33.51%), Postives = 181/367 (49.32%), Query Frame = 1
Query: 19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP-------------------------GVKT----------------------------------DPTTTGE-DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
LDV+ AFL+G+L+E +Y Q GF + V L+KS+YGL+Q+P W D+ + S GFT +D C Y K +++YI+L L+VDD+LI G + + + +++ QL +F + DLG ILGM ++R+R GTL+LSQ +YV +L RF M A P TP GV + D TG DS L T++STTG ++ L V + SRLQKI A STTEAE +A+ K+ +L LG + + SD+ A+ LA N + +R+KHI +R+ +R + QL ++ + A AD+LTK
Sbjct: 861 LDVKTAFLHGDLEEDIYMSQPQGFIVQGK---ENLVCKLRKSLYGLKQAPRQWYKKFDSFMYSTGFTRCQADHCCYVKSFDNSYIILLLYVDDMLIAGSSIEEINNLKKQLSKQFAMKDLGPAKQILGMRIIRDRANGTLKLSQTEYVKKILSRFSMDEAKPVSTPLGSHFRLTKDQSPKTEQEQALHEQVGVVSRYMSNPGKQHWEAVKWILRYLKGTLGTSLCFTGADMKLTGYVDSDLAGDVDTRKSTTGYVYTLGGTAVSWVSRLQKIVALSTTEAEYVAVTEAGKEMVWLQGFLEELGQRQKKGILHSDSQSAIFLAKNPAFHSRTKHIQLRYHFIRSLLDGGQLTLEKILGAKNPADMLTK 1224
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM) HSP 1 Score: 176 bits (446), Expect = 5.500e-47 Identity = 103/321 (32.09%), Postives = 167/321 (52.02%), Query Frame = 1
Query: 19 LDVQVAFLNGELQESVYCKQAPGF-EKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVR--SDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLR 972
+DV+ AFLNG L E +Y Q G+ ++ HP +V LK+S+YGL+QSP +WN TID+ + +GF SD C+Y K I ++L+VDD+++ D+LL ++ L +F +TDLGE+ LGME+ ++ G + + Q K+ +L+ T+G F + G + + S+ Q+ A S+TEAE +AL+ ++ +L LG + V+ DN G++ LA N + R+KHI IR+ +R+ + Q+V+ +V++ D LAD++TK V F LR
Sbjct: 268 MDVKTAFLNGVLDEDIYMAQPDGYVDEDHPD----HVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQDVVTGKMSMRQTKFAKDILQN------------------------------------TSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLR 548
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A438JR94_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JR94_VITVI) HSP 1 Score: 173 bits (438), Expect = 6.800e-47 Identity = 112/335 (33.43%), Postives = 176/335 (52.54%), Query Frame = 1
Query: 19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQP-YVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTP---------GVKTDPT---TTGEDSTLLDTAA---------------TKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
LDV++AFL+G+L+E +Y Q GF GQ V L+KS+YGL+Q+P W DN + +GF +D C Y K +++YI+L L+VDD+LI G + + +++ QL +F + D G ILGM ++R++ GTL+LSQ +YV VL RF M+ A P TP V T P G S + + +++STTG +F L + ++S LQKI STTEAE + K+ +L LG + + + SD+ A+ LA NS + ++SKHI ++ +R + ++++ + + D+LTK
Sbjct: 91 LDVKIAFLHGDLEEDLYMIQPEGFI----VQGQENLVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADHCCYVKSFDNSYIILLLYVDDMLIVGSDIEKINNLKKQLSKQFAMKDSGAGKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLAIGSLMYAMVCTRPDIAHVVGVVSRFISASLKLQCYVDADFAGDIDSRKSTTGFVFTLGGIAISWASNLQKIVTLSTTEAEYVVATEAGKEMIWLHGFLDELGKKQEMGILHSDSQSAIFLAQNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPTDMLTK 421
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Match: A0A5B7BAK4_DAVIN (Uncharacterized protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAK4_DAVIN) HSP 1 Score: 177 bits (450), Expect = 3.440e-46 Identity = 124/391 (31.71%), Postives = 182/391 (46.55%), Query Frame = 1
Query: 19 LDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVK-------TDPTTTGE-----------------------------------------------------------------------------DSTLLDTAATKESTTGTMFFLANGLVHFSSRLQKITATSTTEAELIALAACAKQGTYLLNICR*LGFQLDNFEVRSDNMGALHLAANSNYSNRSKHIAIRFEALRDWIRSNQLVIDHVASADQLADILTK 939
LDV+ AFL+G+L+E +Y KQ GF T P + + L KS+YGL+Q+P W D + + GFT +D C Y K ++ YI+L L+VDD+LI G + + + +++NQL +F + DLG ILGM + R+R GTL+LSQ +YV V+ RF M A P TP P T E DS L ++STTG +F L V + SRLQKI A STTEAE +A+ +K+ +L + LG + +N + SD+ A+HLA NS + +R+KHI +R+ +R + L ++ + + AD+LTK
Sbjct: 896 LDVKTAFLHGDLEEDIYMKQPQGF--TAPGK-EGLICKLAKSLYGLKQAPRQWYKKFDGFMCTNGFTRCQADHCCYMKRFDNDYIILLLYVDDMLIAGSSIQEIKNLKNQLSKQFAMKDLGAAKQILGMRISRDRTAGTLKLSQAEYVKRVISRFSMQDAKPVSTPLASHFRLTKDQSPKTEEEQGYMQRVPYASAVGSLMYAMVCTRPDIAHAVGVVSRFMSNPGKKHWEAIKWILRYLKGTTDTALCFDEADMVLQGYVDSDLAGDVDNRKSTTGYVFTLGGTAVSWVSRLQKIVALSTTEAEYVAVTEASKEMVWLQSFLEELGKKWENSVLYSDSQSAIHLAKNSAFHSRTKHIQLRYHFIRSLLDDKVLSLEKIRGSQNPADMLTK 1283 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24056.6512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24056.6512.1 >prot_H-paniculata_contig24056.6512.1 ID=prot_H-paniculata_contig24056.6512.1|Name=mRNA_H-paniculata_contig24056.6512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=205bp MSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMback to top mRNA from alignment at H-paniculata_contig24056:1676..2875+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24056.6512.1 ID=mRNA_H-paniculata_contig24056.6512.1|Name=mRNA_H-paniculata_contig24056.6512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig24056:1676..2875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24056:1676..2875+ >mRNA_H-paniculata_contig24056.6512.1 ID=mRNA_H-paniculata_contig24056.6512.1|Name=mRNA_H-paniculata_contig24056.6512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at H-paniculata_contig24056:1676..2875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |