mRNA_H-paniculata_contig24051.6511.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24051.6511.1
Unique NamemRNA_H-paniculata_contig24051.6511.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24051.6511.1 vs. uniprot
Match: D7G7D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D8_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 2.490e-89
Identity = 128/185 (69.19%), Postives = 153/185 (82.70%), Query Frame = 1 
Query:    7 HLSHPEGRMMDQLRPNLDFCAACTLVRPKELARVSAAFEAAFPAPNDGKDRCEFVAAVPMSVAFRDWKTFRGISATGTPDGVPSTPEKIRLFPRTRKGERLLQDAGVRQGMRWSATPYRPWKTLERMASHDQHWDENQDMYVLCAGYEDTSRANGVCIELSATGHVKADDDGDGVKAGTRVAREV 561
            H  HP GR+MDQLR ++D+C++  LVRP EL RVSAAF+AAFPAPNDGKDRC+FVAAVP+ +A+ DW+ +RGIS TGTPDGVPS P++I+L+PRTRKGERLLQD   R GMRWS TPYRPWKTLERMA+HDQ+W+ NQD Y+LCAGYE     +GV IELS T  +KA+D GDG +AG RVAREV
Sbjct:   54 HNDHPNGRIMDQLRASIDYCSSWMLVRPHELVRVSAAFQAAFPAPNDGKDRCDFVAAVPVRLAYNDWQRYRGISTTGTPDGVPSNPQQIQLYPRTRKGERLLQDPQNRVGMRWSPTPYRPWKTLERMATHDQYWESNQDHYLLCAGYEAFPPGSGVYIELSVTDMMKAEDAGDGQRAGARVAREV 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24051.6511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7D8_ECTSI2.490e-8969.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24051contigH-paniculata_contig24051:250..3625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSterile alpha motif/pointed domain
Ec32 orthologEc-04_003200.1
Exons3
Model size561
Cds size531
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24051.6511.1prot_H-paniculata_contig24051.6511.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24051 280..3625 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.916568-UTR-H-paniculata_contig24051:249..2791622929690.916568-UTR-H-paniculata_contig24051:249..279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24051 250..279 +
1691480968.985627-UTR-H-paniculata_contig24051:249..2791691480968.985627-UTR-H-paniculata_contig24051:249..279Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24051 250..279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.930921-CDS-H-paniculata_contig24051:279..4591622929690.930921-CDS-H-paniculata_contig24051:279..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24051 280..459 +
1691480968.9957156-CDS-H-paniculata_contig24051:279..4591691480968.9957156-CDS-H-paniculata_contig24051:279..459Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24051 280..459 +
1622929690.944629-CDS-H-paniculata_contig24051:2782..29741622929690.944629-CDS-H-paniculata_contig24051:2782..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24051 2783..2974 +
1691480969.0052185-CDS-H-paniculata_contig24051:2782..29741691480969.0052185-CDS-H-paniculata_contig24051:2782..2974Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24051 2783..2974 +
1622929690.96054-CDS-H-paniculata_contig24051:3466..36251622929690.96054-CDS-H-paniculata_contig24051:3466..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24051 3467..3625 +
1691480969.017294-CDS-H-paniculata_contig24051:3466..36251691480969.017294-CDS-H-paniculata_contig24051:3466..3625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24051 3467..3625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24051.6511.1

>prot_H-paniculata_contig24051.6511.1 ID=prot_H-paniculata_contig24051.6511.1|Name=mRNA_H-paniculata_contig24051.6511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=177bp
MMDQLRPNLDFCAACTLVRPKELARVSAAFEAAFPAPNDGKDRCEFVAAV
PMSVAFRDWKTFRGISATGTPDGVPSTPEKIRLFPRTRKGERLLQDAGVR
QGMRWSATPYRPWKTLERMASHDQHWDENQDMYVLCAGYEDTSRANGVCI
ELSATGHVKADDDGDGVKAGTRVAREV
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mRNA from alignment at H-paniculata_contig24051:250..3625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24051.6511.1 ID=mRNA_H-paniculata_contig24051.6511.1|Name=mRNA_H-paniculata_contig24051.6511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3376bp|location=Sequence derived from alignment at H-paniculata_contig24051:250..3625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGTCATCTCAGCCACCCTGAGGGCCGCATGATGGATCAGCTGAGGCC
GAACCTGGACTTCTGCGCTGCCTGCACGTTGGTGCGGCCGAAGGAACTGG
CCAGGGTTTCCGCTGCGTTCGAGGCGGCGTTCCCCGCGCCCAACGATGGA
AAAGACCGCTGCGAGTTTGTCGCAGCCGTGCCTATGAGCGTGGCGTTTCG
TGACTGGAAGGTGAAAATATATATATATATGTAAAATTAACATTTAGACC
GTTTATTATGGGGCAAAACAACCCTATCAACAAAAAAAATGGCGCTTTTT
GCCCGGTTTTTGTTCAATCGCACATTATGGGGCAACATGACAGCAAAGTT
AGGGTAACTTTTTGACAAATGGCGGGTCAACAAGAAACTTGAAAAAATGC
CAACCCTGTACAATGTTACAAGAATCATACAACCCAATTTGAAATTGGCT
GCGGATCACCGCCCCGACACAATGCATATGATCGACACAGCCGAGATGCA
CAATTCAGAGGTGATAGATGTGGGTCTAGCCGCTGAACAACGCCATCGCT
GCTGCAGCAGTGGTGGCAAATGACGACGATGAGCCTCACACCTCGAAGCA
CTATCGCAATTTCACCTTCGACACCCTTCATTGATGAAAACAAGAGCGTT
GCCTCCCCAAGCGCATGCGCAACGGCGTCGGTAGGCTAGACTAGTGTGAC
ACGGGTTGGTGGAAGCTGCTCGAGCAGAGGGACGAGCCGGAGGATATATT
ATGGGCAAAGGCTGCGCTATTTTCAACCCCGTGCTGGTCAATTCAGACTC
TTCGAGCTTAGCACAGTGTTTTCGCAGACAGTATTGCATGGCATTACTTG
CTTCGAAATCGAGATTGTTTGGTGATACAGTATCTACCGCCTGGCTCGCC
ATCGCACAGCCGATCGAGCCCACAATACAATACAGTACATAGTCGGTGTG
GTGCACCTCAGCTGTAAAGCAGTACATCCTTCACGTACACACTAAACCAT
TTTCCAAATCAGGCTTGCAAGTCATGCTCTAAACGCCCAAGTTTTTCTCT
TTTTGTTTACCCTCACCATGATGTGCACGTGTAAAAAATTCGTTTTGATT
TATAACTGAAAAAGTGCGATTTTTGCTCGAATTTTTTGCATTTTTTTTTC
TCCTTAATAAAGGGTCTTAACATTGGGATATTACAAGTAAATCTTGTAAG
GCTCTTTTTATCACATGAATAGGATTTTCACGTTACTTTGTGTAGCACAT
GACTAGCACCAGAACTGGTTTTAGGGTGGTCTTGATTCAAGGAGTGGCGG
TCGGTTCTGCCTACAGTATAACTTTCAGCCTGAATGACGCAGACATTACG
GATGAAGAAAACGCACACAAGAGTCGAATTCGTATATGCTTGGAACCGCA
GGTATGCCAGCCTGAGTACCCCACCCCCTCCACGTGTAACCCTCAAAGGG
GTCACACCTCAAAATATGTACTTTTCGGGATCTGTTTTTGACCTTTTGTT
TCATACAAAAAAGACGTTCTATGGTGCAAAATAGCAACAGAAAAGCGTTC
TTTCAAAATTGCTTGAATGACACACTGTTAAGAGGCGATTGTACCTGCGA
GGGAGTGGTCGCTCGTTCTGTCTGAGAAGAGCATTGGTTGACTTGTCAGT
ATTTTGCTCTCCCCCTCCCCCTCCCCCTCCCCCGAAAGAGCAACAGTGGT
TGATTTGCGCTTATATTTTGCCCCGTAGGGATTGTTATTACTGTCGCCGC
TCTGCCCCTGCTGTCCGTGCTTTCTGGTCATATCCATGTGTAATTTGTTC
CAAAATTCATGATCCACGCACAGCGGGTTGCTGTCCCCTCTGCGCCATGT
GAGCGGATGGTTAGTGATGTGTATTCAGATATTGTTCCCCCCCCCCCCCC
TGGTTGATGTAATATAATTTTGATGATGGGTCGAACATCGAGACCGGTTT
TTTTTTTGTTTATTGTAGAGTAAGGGTGTGTCTTTGGTCGGGGAGGGGGG
AGGGAGTGGAAACCTTGTTTATATTGATGTACTCGTATGTATACAGGTAG
CCTTTCCTGTAATATGAGTCTCGTTTTATCTATCTTCATATATCTTAAGT
TGAACTGTACGGATTTTGGATGGAGGTAGTTCGGTTCGGTTCGGTTTGAT
TTGGTTCGGACCGACCAAGATCAGTACGATTCGGCTCATGCGGATCAGTC
ATGAAGAAAACAATACACCTGGTGCTAACGGAGTAACAAGGGGTAGGATG
CGAATCAGAGGTGGTAGACAACCATGCACGTATGGTCGAGAACGGTATAC
AGTGTGCAGTACAGTACATGACCGATTTTGAGCTGTTAGGGATCTGATCG
GAGTGCCTGCCTCTAACCGTGGAAACTCTCGTCGGGCAGTTTCTGCAAAA
TTCACTTTTTCTTTTTCATGTTAAAAAATCTCAATCTTTGTATATTTTGT
TCTTCTCATCTGTTTTTATCTTCACCTGCGCCGCTGATATATCTTGTTTT
CCCGTTAAACCGGTCTCGTTTGGTTCGGTTTAGACGTTTCGAGGCATATC
TGCAACAGGCACTCCCGACGGCGTGCCCAGTACGCCCGAAAAAATCCGGC
TCTTTCCGCGAACTCGCAAGGGAGAACGCCTGCTTCAGGACGCGGGCGTT
CGTCAGGGGATGCGGTGGTCGGCAACGCCCTACAGGCCATGGAAAACGTT
GGAGAGAATGGCAAGCCATGATCAGGTGTTGGTATTATTATTGTTTGTTG
TTTGTTTGTTGTTGTCCTGTATGTGTGTTTTAAAACAAGATTTGAAAGAG
CGGCTGATATGCCACATCGCGAAGTTAAATAAATTGCAACGCTGCATGAG
CCAGATGTTAACTTTTGCTTTTTTTTTGTAAGCGTTTTAGTTATGCGAAG
ATATATATCTCTATGTTTCTAATTTTTTTCCAGTAATAGAGCCACGACTA
CACACGCCCCCTAGTCCATGAATTGTACGTATACCCTATCCATTTTGTCA
TTGTCCGAAAGCGATGATCTGTCCACAACAGCTCTATTTGGTTACAATTT
TATGTGAAGATCCGTTTTTCCAGAATGTCCTGGGGTATATATATATACAC
ATATGGTTGATAAATATTCCGAAACGCCAAATTATCGTGTTTCAGTGTCT
AATAACACAGCTAGCCATTGCAGGGTTAACTTGCTTTTTTTTTTTTCACC
TCTTCCGTTTTTGGCAGCACTGGGACGAGAATCAGGACATGTACGTGCTT
TGTGCTGGGTACGAAGATACTAGCCGCGCGAACGGCGTTTGTATCGAGCT
TTCTGCCACTGGTCATGTTAAGGCGGACGATGATGGCGACGGGGTGAAAG
CGGGGACTCGGGTCGCACGGGAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig24051:250..3625+

>mRNA_H-paniculata_contig24051.6511.1 ID=mRNA_H-paniculata_contig24051.6511.1|Name=mRNA_H-paniculata_contig24051.6511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1062bp|location=Sequence derived from alignment at H-paniculata_contig24051:250..3625+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGATCAGCTGAGGCCGAACCTGGACTTCTGCGCTGCCTGCACGTT
GGTGCGGCCGAAGGAACTGGCCAGGGTTTCCGCTGCGTTCGAGGCGGCGT
TCCCCGCGCCCAACGATGGAAAAGACCGCTGCGAGTTTGTCGCAGCCGTG
CCTATGAGCGTGGCGTTTCGTGACTGGAAGATGATGGATCAGCTGAGGCC
GAACCTGGACTTCTGCGCTGCCTGCACGTTGGTGCGGCCGAAGGAACTGG
CCAGGGTTTCCGCTGCGTTCGAGGCGGCGTTCCCCGCGCCCAACGATGGA
AAAGACCGCTGCGAGTTTGTCGCAGCCGTGCCTATGAGCGTGGCGTTTCG
TGACTGGAAGACGTTTCGAGGCATATCTGCAACAGGCACTCCCGACGGCG
TGCCCAGTACGCCCGAAAAAATCCGGCTCTTTCCGCGAACTCGCAAGGGA
GAACGCCTGCTTCAGGACGCGGGCGTTCGTCAGGGGATGCGGTGGTCGGC
AACGCCCTACAGGCCATGGAAAACGTTGGAGAGAATGGCAAGCCATGATC
AGACGTTTCGAGGCATATCTGCAACAGGCACTCCCGACGGCGTGCCCAGT
ACGCCCGAAAAAATCCGGCTCTTTCCGCGAACTCGCAAGGGAGAACGCCT
GCTTCAGGACGCGGGCGTTCGTCAGGGGATGCGGTGGTCGGCAACGCCCT
ACAGGCCATGGAAAACGTTGGAGAGAATGGCAAGCCATGATCAGCACTGG
GACGAGAATCAGGACATGTACGTGCTTTGTGCTGGGTACGAAGATACTAG
CCGCGCGAACGGCGTTTGTATCGAGCTTTCTGCCACTGGTCATGTTAAGG
CGGACGATGATGGCGACGGGGTGAAAGCGGGGACTCGGGTCGCACGGGAG
GTGCACTGGGACGAGAATCAGGACATGTACGTGCTTTGTGCTGGGTACGA
AGATACTAGCCGCGCGAACGGCGTTTGTATCGAGCTTTCTGCCACTGGTC
ATGTTAAGGCGGACGATGATGGCGACGGGGTGAAAGCGGGGACTCGGGTC
GCACGGGAGGTG
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