prot_H-paniculata_contig2405.6510.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2405.6510.1
Unique Nameprot_H-paniculata_contig2405.6510.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length804
Homology
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Match: D8LMM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM2_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.550e-91
Identity = 283/749 (37.78%), Postives = 362/749 (48.33%), Query Frame = 0
Query:  113 WGFLCVDGCVLAWEQGMVTAERAGAATGADQSFLRFDHPTMVNELMAMEAPEVPVEAADLVALSQPWRACEGRRELLIVSPGGLVRYWPDVRSPRRFTDVDLKKTVITPEQLVTRVAAIGPAEFVCGLSQGGVVRLRPGVASPCLLTEGT-SVLSQGFGIVKKVGDGNSSLSSSSITASNNKCPVVALATVPPPRSTSRRLGAGAXXXXXXXXXSATRLLRLTTETLEVWSVHGAAYGMQSLEARYPLLASVQAALGGGRGGKAYLVDLAVAGDARIVSPSGDAATSAPGFEVEVLVLAISVEAAEGWGVE-----------------------------GTEGGGSGGWDGAFSLHVVRVSSAAASWVGTSSNYSELSCSLSHVFLCVSASSFCTVHGRPGHYPPETCYASDSQLYVAFSAKPFPRATLVIDREAFFAPGNGGGRGWSGXXXGDSGSTVRAHVYWPAVAM--AGGRESGLAAA-VTSVTAKLLG------------EAVTWEEGGALDVPRYLALFRGCVGGGAALRGCPGLMLLSPQGQAIWVAPREDGGGPSQVRGEDGGRVMDL-EAPWVTS----EQAVQEWKKVILNG-LGTYEGGGAMDNARLNVEALLRRDAAVGVVRG------NLDAAVTKVLQLTSTPAXXXXXXXXXXXXXXQAGLEVLNGSWRQPAAFASPHQLVHLALREKTRHHRALIRFLLDAGAWGSAVAGRAALAEGGEKVAAAGRLCELQ 804
            W F+C D  VLAWEQGMV AER GAA  AD++ L+F+HP M++EL AM AP                              GG +                           VTRV A+GP +F+CGLS+GG++RLRPG+ +P LLT+ T SVL +GF  ++++G G ++ ++++  AS +  PVVAL+   PP  +   +               +R++RLTT+TLEVWS+ G   G   LE R+PL + +Q ALG  +   A L+D+AV G    VSP        P            V     WG+E                               +GG         S+H VRVS   ASWVG+S +   +S   SH              GR G  P     AS+     +       RATLV D E  F+ G+G   G   XXX      + AHV+WP+     A  R  G A A V SV  K  G              + WEE G++ V    AL  GCVGGG AL GCPG++LLS QGQA+WVAPR     P        G  +DL   P V +        +EW+  ++ G L  +E G  MD ARL V +LL R AA    RG      +LD+A+    +     A              QAGLEVLNGSWR P+AFASPHQLVHLALREK R  RAL+R LLDAGAWG++  GRAAL+E GEKVAAA RLCELQ
Sbjct:   28 WAFMCTDTGVLAWEQGMVAAERPGAAVRADEACLQFEHPAMMHEL-AMMAPL-----------------------------GGKIA--------------------------VTRVVALGPTDFLCGLSRGGILRLRPGLDAPILLTQKTTSVLGRGFSTIRRMG-GEATAAAATTAASAS--PVVALSVARPPGGSPAGI--------------PSRVVRLTTDTLEVWSI-GVGGGTPCLEVRHPLASQIQRALGVRQ---ACLLDVAVTGAPTTVSPP-------PAXXXXXXXXXXVVS----WGLELLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGG-------ELSVHAVRVSCGEASWVGSSVSVQVIS---SHHVSTTXXXXXXXXXGRRGRQPAFRAAASNPSAPASLGPG-CRRATLVADNEQAFSTGDGTRVGGXXXXX-----XIGAHVFWPSSTSPDASVRGGGTATAQVWSVCVKDRGGDGASXXXXXXXXXIEWEERGSVTVSSRTALSGGCVGGGGALLGCPGVVLLSSQGQAVWVAPRHTES-PXXXXXATAGLAVDLGPRPEVVAAIPGNDTSEEWRMALVEGGLRAFEDGETMDPARLAVGSLLGR-AAQETGRGAMSSTEDLDSAIVWGWEGPKPVAARGKGHI-------QAGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLLDAGAWGASSVGRAALSECGEKVAAASRLCELQ 663          
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Match: A0A6H5JHH9_9PHAE (Nucleoporin_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH9_9PHAE)

HSP 1 Score: 242 bits (617), Expect = 1.710e-63
Identity = 254/755 (33.64%), Postives = 319/755 (42.25%), Query Frame = 0
Query:   92 ATAGAQASSSHMCSGRVLDHGWGFLCVDGCVLAWEQGMVTAERAGAATGADQSFLRFDHPTMVNELMAMEAPEVPVEAADLVALSQPWRACEGRRELLIVSPGGLVRYWPDVRSPRRFTDVDLKKTVITPEQLVTRVAAIGPAEFVCGLSQGGVVRLRPGVASPCLLTEGTSVLSQGFGIVKKVGDGNSSLSSSSITASNNKCPVVALATVPPPRSTSRRLGAGAXXXXXXXXXSATRLLRLTTETLEVWSVHGAAYGMQSLEARYPLLASVQAALGGGRGGKAYLVDLAVAGDARIVSPS---GDAATSAP--GFEVEVLVLAISVEAAEGWGVEGTEGGGSGGWDGAFSLHVVRVSSAAASWVGTSSNYSELSCSLSHVFLCVSASSFC--TVHGRPGHYPPETCYASDSQLYVAFSAKPFPRATLVIDREAFFAPGNGGGRGWSGXXXGDSGSTVRAHVYWPA-----VAMAGGRESGLAAAVTSVTAKLLGEAVTWEEGGA------------------LDVPRYLALFRGCVGGGAALRGCPGLMLLSPQGQAIWVAPREDGGGPSQVRGEDGGRVMDL-EAPWVTSE----QAVQEWKKVILNG-LGTYEGGGAMDNARLNVEALLRRDAAVGVVRG------NLDAAVTKVLQLTSTPAXXXXXXXXXXXXXXQAGLEVLNGSWRQPAAFASPHQLVHLALREKTRHHRALIRFLLDAGAWGSAVAGRAALAEGGEKVAAAGRLCELQ 804
            ATA        +C+GRVL HGW F+C D  VLAWEQGMV AER GAA  ADQ  LRF+HP M++EL A+ AP                              GG +                                A+G  E + G+S    + +R   AS             G G +                                      R GA            A R++RLTT+ LEVWSV G   G   LE  +PL + +Q ALG  +   A L+D+AV G    VSPS   G+A+ S P   + +E+LVLA +                  G     S+H VRVSS  ASWVG+S +   +S   SH     SA++        R G  P     A +     +       RATLV D E  F+ G+G          G  G  + AHV+WP+     V++ GG  +   A V SV  K       W   GA                                    AL GCPG++LLS QGQA+WVAPR      S       G  +DL   P V +        +EWK  ++ G L  +E G  MD  RL + +LL R AA    RG      N+D+A+ +                        AGLEVLNGSWR P+AFASPHQLVHLALREK R  RAL+R L+DAGAWG+   GRAAL+E GEKVAAA RLCELQ
Sbjct:    7 ATAETSGGRGCLCTGRVLSHGWAFMCTDTGVLAWEQGMVAAERPGAAVRADQVCLRFEHPAMMHEL-ALMAPL-----------------------------GGKI--------------------------------AVGFCELLSGMS--ATLGMRVSKAS-------------GRGALDHF-----------------------------------RAGARVFQNQEDGGIPA-RVVRLTTDILEVWSVGGGG-GTPCLEVCHPLASQIQRALGVRQ---ACLLDVAVTGAPTTVSPSPASGEASASPPVVSWGLELLVLAAAGAXXXXXRYXXXXXXXXXGDGRELSVHAVRVSSGEASWVGSSVSVQVIS---SHHVTTTSATATAEAVAAARRGRQPAFPAAAPNPPAPASLGPG-CRRATLVADNEQAFSTGDG-------TRVGGGGGGIVAHVFWPSSPSPDVSVEGGGTA--TAQVWSVCVK------AWGGDGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALLGCPGVVLLSRQGQAVWVAPRHT---ESPAAAAAAGLAVDLGPCPEVFASIPGNDTSEEWKMALVEGGLRAFEEGKTMDPTRLAMGSLLGR-AAQETGRGAMASTENIDSAIVR------------------------AGLEVLNGSWRHPSAFASPHQLVHLALREKARRQRALVRVLMDAGAWGALSVGRAALSECGEKVAAASRLCELQ 597          
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Match: A0A835YV83_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV83_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.500e-9
Identity = 62/208 (29.81%), Postives = 99/208 (47.60%), Query Frame = 0
Query:   65 PKQAGARR-SDTLIETDYHAVMKAGAIPAT---AGAQASSSHMCSGRVLDH-GWGFLCVDGCVLAWEQGMVTAERAGAATGADQSFLRFDHPTMVNELMAM--EAPEVPVEAADLVALSQPWRACEGRRELLIVSPGGLVRYWPDVRSPRRFTDVDLKKTVITPEQLVTRVAAIGPAEFVCGLSQGGVVRLRPGVASPCLLTEGTSVL 265
            P ++G RR   + +E   H V     +PAT   A   A        +VL    W  L + G +  WEQ +V  + +G A GA  + +  + P  ++E++          ++  D+V    P     G +ELL+++P G  R+W DVR P+   D ++    + P++ VT V  +   EFVCGLS G  + LRP +++P  L    S L
Sbjct:   37 PGRSGIRRWRQSPLEHKSHIVDTCNRLPATVRVALESADGGQPIGAKVLTTPSWAVLSLGGRLYVWEQ-LVAPDHSGGA-GAPLAHV-LELPGGMDEVVGGGGAVSTDAMQRVDMVEAGGPG----GAKELLVLTPRGAGRHWRDVRRPQHNVDTEV---ALGPDEFVTCVVGVNRGEFVCGLSSGAAMWLRPTLSAPVRLAPARSRL 234          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2405.6510.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMM2_ECTSI1.550e-9137.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHH9_9PHAE1.710e-6333.64Nucleoporin_C domain-containing protein n=1 Tax=Ec... [more]
A0A835YV83_9STRA5.500e-929.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 96..356
e-value: 4.6E-6
score: 27.8
NoneNo IPR availableSUPERFAMILY117289Nucleoporin domaincoord: 102..256

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2405contigH-paniculata_contig2405:640..21381 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2405.6510.1mRNA_H-paniculata_contig2405.6510.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2405 541..21381 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2405.6510.1 ID=prot_H-paniculata_contig2405.6510.1|Name=mRNA_H-paniculata_contig2405.6510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=804bp
MSSEEIGMTTLDVPAFFNVVARRSGDPTTEELHARSSSSAKRFNRGKPLG
LHGLASGADGLLQGPKQAGARRSDTLIETDYHAVMKAGAIPATAGAQASS
SHMCSGRVLDHGWGFLCVDGCVLAWEQGMVTAERAGAATGADQSFLRFDH
PTMVNELMAMEAPEVPVEAADLVALSQPWRACEGRRELLIVSPGGLVRYW
PDVRSPRRFTDVDLKKTVITPEQLVTRVAAIGPAEFVCGLSQGGVVRLRP
GVASPCLLTEGTSVLSQGFGIVKKVGDGNSSLSSSSITASNNKCPVVALA
TVPPPRSTSRRLGAGAATAAAAPAASATRLLRLTTETLEVWSVHGAAYGM
QSLEARYPLLASVQAALGGGRGGKAYLVDLAVAGDARIVSPSGDAATSAP
GFEVEVLVLAISVEAAEGWGVEGTEGGGSGGWDGAFSLHVVRVSSAAASW
VGTSSNYSELSCSLSHVFLCVSASSFCTVHGRPGHYPPETCYASDSQLYV
AFSAKPFPRATLVIDREAFFAPGNGGGRGWSGGGGGDSGSTVRAHVYWPA
VAMAGGRESGLAAAVTSVTAKLLGEAVTWEEGGALDVPRYLALFRGCVGG
GAALRGCPGLMLLSPQGQAIWVAPREDGGGPSQVRGEDGGRVMDLEAPWV
TSEQAVQEWKKVILNGLGTYEGGGAMDNARLNVEALLRRDAAVGVVRGNL
DAAVTKVLQLTSTPAPPYPTPPRHTHTHTQAGLEVLNGSWRQPAAFASPH
QLVHLALREKTRHHRALIRFLLDAGAWGSAVAGRAALAEGGEKVAAAGRL
CELQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf