mRNA_H-paniculata_contig24024.6503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24024.6503.1
Unique NamemRNA_H-paniculata_contig24024.6503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: A0A7S4CNL2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CNL2_9EUGL)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-16
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 1
Query:    7 SGSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGALCLVF 273
            +GSFGALSTL+Y+ P +PLAQPRV+L  H LA+   VSC+ +  F       RG  VWLQ+ALA +  +  M+  G  HPPAGAL L+F
Sbjct:   77 AGSFGALSTLLYSLPSAPLAQPRVLLLGHVLAMC--VSCAVMYPFG------RGTEVWLQKALACSITVALMAKLGFPHPPAGALTLIF 157          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: UPI001FAFBCB6 (HPP family protein n=1 Tax=Fundidesulfovibrio sp. SG60 TaxID=2922716 RepID=UPI001FAFBCB6)

HSP 1 Score: 67.0 bits (162), Expect = 9.970e-12
Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   10 GSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGA 258
            GSFGA S L+YAAP SPLAQPR +L  H L+  + V+          R ++ G + WL  ALAVAC I  M L G +HPP GA
Sbjct:   55 GSFGASSVLLYAAPRSPLAQPRNLLGGHVLSALVGVAV---------RLWLPGPA-WLACALAVACAIALMQLTGTLHPPGGA 127          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: UPI001FACD7B3 (HPP family protein n=1 Tax=Fundidesulfovibrio sp. SG106 TaxID=2922717 RepID=UPI001FACD7B3)

HSP 1 Score: 64.7 bits (156), Expect = 7.680e-11
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   10 GSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGA 258
            GSFGA S L+YAAP SPLAQPR +L  H L+  + V+          R  + G + WL  ALAVAC I  M + G +HPP GA
Sbjct:   55 GSFGASSVLLYAAPRSPLAQPRNLLGGHVLSALVGVAV---------RLCLPGPT-WLACALAVACAIALMQVTGTLHPPGGA 127          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: A0A7S3HJK6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJK6_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 8.540e-11
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1
Query:   13 SFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGA 258
            SFGALST+VYA P +PL QPR++ +AH+ A+A+S+         +   F + Q VWLQ+ALA    I  M+  GI++PP+GA
Sbjct:  332 SFGALSTIVYALPAAPLGQPRIVYTAHTWAMAVSIV--------IIYIFDQYQYVWLQRALAAGVCIGGMAKLGILNPPSGA 405          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: A0A7S0YRZ6_9CRYP (Hypothetical protein n=4 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YRZ6_9CRYP)

HSP 1 Score: 64.7 bits (156), Expect = 4.190e-10
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 1
Query:   10 GSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSV---WLQQALAVACVILCMSLKGIIHPPAGALCLVFLE 279
            GSFGAL+TLV+AAP  PLAQPR+++  H ++  + +S   L S        R  ++   W+  ALA A  I  M+  G+ HPPAGA  L+++ 
Sbjct:  466 GSFGALATLVFAAPVVPLAQPRIVVGGHIISAIVGISMGYLTSD-------RDSAILPQWVANALAPAVAITLMAATGMTHPPAGACTLIYIS 551          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: A0A7S0UCK6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UCK6_HEMAN)

HSP 1 Score: 64.3 bits (155), Expect = 5.490e-10
Identity = 36/90 (40.00%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   10 GSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGALCLVFLE 279
            GSFGAL+TL++AAP +PLAQPR+++  H ++ A+ +    L +      F+     W+  ALA A  I  M+  G+ HPPAGA  L+++ 
Sbjct:  299 GSFGALATLLFAAPVAPLAQPRIVVGGHIISAAVGIIVDYLTNDK----FVAIIPQWVANALAPALAITLMAATGLTHPPAGACSLMYIS 384          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: A0A830I2A8_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830I2A8_9CHLO)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-9
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 1
Query:   10 GSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSV--WLQQALAVACVILCMSLKGIIHPPAGALCLVFLEA 282
            GS GAL TL++AAP SPLAQPR +L  H +A  + +    + ++    A  +G  +  W+ QAL+ +  I  M+L G+ HPPAGA+ L+ + A
Sbjct:  322 GSMGALCTLLFAAPNSPLAQPRNVLYGHLMACLVGI----VLNYMTETANDKGDGIPRWVTQALSPSLAIAGMALFGVTHPPAGAVSLIMVSA 410          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: A0A1G0KY86_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium RIFOXYD12_FULL_61_37 TaxID=1798308 RepID=A0A1G0KY86_9GAMM)

HSP 1 Score: 61.6 bits (148), Expect = 1.100e-9
Identity = 39/88 (44.32%), Postives = 49/88 (55.68%), Query Frame = 1
Query:   10 GSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLA-SFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGALCLV 270
            GSFGA S L++AAPGSP AQPR +   H+L+  I VSC  L   +S+           L  A+AVA  I  M L   +HPP GA  L+
Sbjct:   52 GSFGASSVLLFAAPGSPFAQPRNLFGGHALSALIGVSCYLLLHEYSI-----------LAPAMAVASAIAAMQLSRTLHPPGGATALI 128          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: A0A139CEF1_9GAMM (Uncharacterized protein n=2 Tax=Halomonadaceae TaxID=28256 RepID=A0A139CEF1_9GAMM)

HSP 1 Score: 60.5 bits (145), Expect = 3.150e-9
Identity = 38/87 (43.68%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   10 GSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGALCLV 270
            GSFGA S L+YAAP SPLAQPR +L  + L+  I V+C                  WL  A+AV+  IL M L   +HPP GA  L+
Sbjct:   55 GSFGATSVLLYAAPESPLAQPRNVLGGNVLSALIGVACWQWLG-----------DTWLAGAVAVSTAILVMQLTHTLHPPGGATALI 130          
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Match: L1ITB0_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1ITB0_GUITC)

HSP 1 Score: 62.0 bits (149), Expect = 3.690e-9
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 VFSGSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVYRAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGALCLVFLEA 282
            +  GS+GAL+TL++AAP SP AQPR+++ +H +A +I+V  + L        F +  S     AL  A VI  M+  G+ HPPA A  ++++ A
Sbjct:  440 IMLGSYGALATLIFAAPSSPFAQPRMVIGSHIIACSIAVIVNYLTDPKYVAFFPQPVS----DALVPALVITAMAGSGLTHPPAAACSIIYISA 529          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24024.6503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4CNL2_9EUGL1.290e-1651.69Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
UPI001FAFBCB69.970e-1249.40HPP family protein n=1 Tax=Fundidesulfovibrio sp. ... [more]
UPI001FACD7B37.680e-1148.19HPP family protein n=1 Tax=Fundidesulfovibrio sp. ... [more]
A0A7S3HJK6_9STRA8.540e-1146.34Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0YRZ6_9CRYP4.190e-1040.86Hypothetical protein n=4 Tax=Hemiselmis tepida Tax... [more]
A0A7S0UCK6_HEMAN5.490e-1040.00Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A830I2A8_9CHLO1.040e-940.86Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A1G0KY86_9GAMM1.100e-944.32Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A139CEF1_9GAMM3.150e-943.68Uncharacterized protein n=2 Tax=Halomonadaceae Tax... [more]
L1ITB0_GUITC3.690e-938.30Uncharacterized protein n=2 Tax=Guillardia theta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24024contigH-paniculata_contig24024:448..1194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score67.0
Seed ortholog evalue5.3e-09
Seed eggNOG ortholog1121441.AUCX01000002_gene2927
KEGG koko:K04767,ko:K07168
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.HPP family
EggNOG OGs1MXJG@1224,2MBBZ@213115,2WNED@28221,42RSQ@68525,COG3448@1,COG3448@2
COG Functional cat.T
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.8666945-CDS-H-paniculata_contig24024:447..6111622929689.8666945-CDS-H-paniculata_contig24024:447..611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24024 448..611 +
1691480968.5018303-CDS-H-paniculata_contig24024:447..6111691480968.5018303-CDS-H-paniculata_contig24024:447..611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24024 448..611 +
1622929689.9193146-CDS-H-paniculata_contig24024:1076..11941622929689.9193146-CDS-H-paniculata_contig24024:1076..1194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24024 1077..1194 +
1691480968.5144207-CDS-H-paniculata_contig24024:1076..11941691480968.5144207-CDS-H-paniculata_contig24024:1076..1194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24024 1077..1194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24024.6503.1prot_H-paniculata_contig24024.6503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24024 448..1194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24024.6503.1

>prot_H-paniculata_contig24024.6503.1 ID=prot_H-paniculata_contig24024.6503.1|Name=mRNA_H-paniculata_contig24024.6503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
VFSGSFGALSTLVYAAPGSPLAQPRVILSAHSLAIAISVSCSTLASFSVY
RAFMRGQSVWLQQALAVACVILCMSLKGIIHPPAGALCLVFLEA
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mRNA from alignment at H-paniculata_contig24024:448..1194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24024.6503.1 ID=mRNA_H-paniculata_contig24024.6503.1|Name=mRNA_H-paniculata_contig24024.6503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=747bp|location=Sequence derived from alignment at H-paniculata_contig24024:448..1194+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTTCTGGCTCCTTCGGAGCACTCTCCACCCTGGTCTACGCCGCACC GGGCAGTCCTTTGGCGCAACCGCGAGTCATCCTTTCTGCGCACAGCTTGG CCATCGCAATATCTGTGAGTTGTTCAACGTTGGCCTCCTTTTCGGTTTAC AGGGCATTTATGCGGTAGCGTTGTCAATAGATAGTCTGTGCATGGTGCAC TTATTGCGTAGTTATGTGTGTGGGGGGGGCAGGAAAGATGGACATATCTA AGATCTCTAGTATCATAGCCGCACATACTCATCAGCCACCTTTTAAACAA CAGCACATTTGAAATTCACGATGAAAAAACGGGCATATGTAAATATATGC ATATGTAACAGCATATTGGTGAAATGGGGACCCAACTTTGAGATGGGGAC CCTGGGTTACATTGGAAATAGGCTGAAATTGATTTTCAGGAAAAGGCCTA TTTCCAATATATCCCAGAGTCCCCATCTCAAAGTTGGGTCCCCATTTCAC CCATAAGGTGTTATGTATATGTGTTGAGATAATCTCTATCGGTTCGTCTA TGTGTCTGTCTTTATCTCTGTCGCCCTCTCTCTGTGTGCCTCTCTCGTTT CAGGTGGTCGTCATATGCATATTCGAGAGGGGGCAGTCGGTGTGGCTTCA GCAAGCGCTCGCTGTGGCCTGCGTAATTCTATGCATGTCTCTCAAGGGCA TCATACACCCTCCCGCCGGCGCCTTGTGCCTCGTTTTCCTCGAAGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig24024:448..1194+

>mRNA_H-paniculata_contig24024.6503.1 ID=mRNA_H-paniculata_contig24024.6503.1|Name=mRNA_H-paniculata_contig24024.6503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig24024:448..1194+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTTTCTGGCTCCTTCGGAGCACTCTCCACCCTGGTCTACGCCGCACC
GGGCAGTCCTTTGGCGCAACCGCGAGTCATCCTTTCTGCGCACAGCTTGG
CCATCGCAATATCTGTGAGTTGTTCAACGTTGGCCTCCTTTTCGGTTTAC
AGGGCATTTATGCGGTTTTTTCTGGCTCCTTCGGAGCACTCTCCACCCTG
GTCTACGCCGCACCGGGCAGTCCTTTGGCGCAACCGCGAGTCATCCTTTC
TGCGCACAGCTTGGCCATCGCAATATCTGTGAGTTGTTCAACGTTGGCCT
CCTTTTCGGTTTACAGGGCATTTATGCGGGGGCAGTCGGTGTGGCTTCAG
CAAGCGCTCGCTGTGGCCTGCGTAATTCTATGCATGTCTCTCAAGGGCAT
CATACACCCTCCCGCCGGCGCCTTGTGCCTCGTTTTCCTCGAAGCGGGGG
CAGTCGGTGTGGCTTCAGCAAGCGCTCGCTGTGGCCTGCGTAATTCTATG
CATGTCTCTCAAGGGCATCATACACCCTCCCGCCGGCGCCTTGTGCCTCG
TTTTCCTCGAAGCG
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