mRNA_H-paniculata_contig24022.6502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24022.6502.1
Unique NamemRNA_H-paniculata_contig24022.6502.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig24022.6502.1 vs. uniprot
Match: D8LHU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU0_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.630e-28
Identity = 59/87 (67.82%), Postives = 72/87 (82.76%), Query Frame = 1 
Query:    1 APAGTLKMSWRLLRRVMGIHKDDAVASNRLVLAEELAQNMLKADDSLPNLKTSWDNLMWNLEFDDDDTESQTLMDAAKEGVSAALVE 261
            +PAGTLKMS RLLRRVM ++K+DAV+SN LVL+EEL+Q +  ADDSLP++K SWDNLMWNLE DD D ES+  M AA +GV A+LVE
Sbjct:  625 SPAGTLKMSSRLLRRVMDMYKNDAVSSNILVLSEELSQRLFDADDSLPDIKLSWDNLMWNLEIDDGDYESEKQMKAAMDGVLASLVE 711
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24022.6502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHU0_ECTSI4.630e-2867.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24022contigH-paniculata_contig24022:879..1875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000440.1
Exons2
Model size261
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24022.6502.1prot_H-paniculata_contig24022.6502.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24022 900..1875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.803876-UTR-H-paniculata_contig24022:878..8991622929689.803876-UTR-H-paniculata_contig24022:878..899Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24022 879..899 +
1691480968.4709291-UTR-H-paniculata_contig24022:878..8991691480968.4709291-UTR-H-paniculata_contig24022:878..899Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24022 879..899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.816069-CDS-H-paniculata_contig24022:899..10111622929689.816069-CDS-H-paniculata_contig24022:899..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24022 900..1011 +
1691480968.481056-CDS-H-paniculata_contig24022:899..10111691480968.481056-CDS-H-paniculata_contig24022:899..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24022 900..1011 +
1622929689.831702-CDS-H-paniculata_contig24022:1747..18751622929689.831702-CDS-H-paniculata_contig24022:1747..1875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24022 1748..1875 +
1691480968.4912057-CDS-H-paniculata_contig24022:1747..18751691480968.4912057-CDS-H-paniculata_contig24022:1747..1875Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24022 1748..1875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24022.6502.1

>prot_H-paniculata_contig24022.6502.1 ID=prot_H-paniculata_contig24022.6502.1|Name=mRNA_H-paniculata_contig24022.6502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MSWRLLRRVMGIHKDDAVASNRLVLAEELAQNMLKADDSLPNLKTSWDNL
MWNLEFDDDDTESQTLMDAAKEGVSAALVE
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mRNA from alignment at H-paniculata_contig24022:879..1875+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24022.6502.1 ID=mRNA_H-paniculata_contig24022.6502.1|Name=mRNA_H-paniculata_contig24022.6502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=997bp|location=Sequence derived from alignment at H-paniculata_contig24022:879..1875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTCCCGCCGGAACGCTCAAGATGTCTTGGAGGCTGCTTCGACGAGTCAT
GGGTATTCACAAGGATGATGCCGTGGCGTCGAACAGGCTGGTGCTTGCGG
AGGAGTTGGCGCAAAATATGTTGAAGGCTGATGGTGAGTAAGACATGAGA
CTTGCTGCTCACACGCGGTGCTCTGCTATACCATACCACACCATACCAAA
CCATACCATACGAACTACAGCAGAGTGGTCTTTGGAGTACAAGAAATATC
TGCATGTAAAAAATTGATATGGTCCTGCATGACTCGCAGTTTGCGACTTC
ACGATGATCTACAGGTAGGTCCCCGACCCCAGTCCACCGGAACCAACGTC
GAGATACGAAACGAATTCCTTTTCGAAGTTTCGTGAGTTTTACGGTCGTT
TCGAAGGGTTGTGAAGAGCAATTCGTTTCATTGTGAGGCGTGGTTGCAAG
TCGAGTGTCGTCCGGAACCTCGAGCTTCCTTTGAGCCATGCAGGGCCGAA
TCGATTTTTTTGCAAACAGATATTTGTCGTCGCTGTCGTAAACACTAGCA
GTAGTTGAGTTCCTGCCACCGGTACGCCAATAAATGATATAGTTGTTTGT
TTGGCACCTCTGACAACTTTGGCATTATCCCAAATCTATGACTTGCGCAC
AAAGGCTCGCTCCGCTCGGATGTACCAGCAGGCACCATGTCCATGGTAGA
AAAAAATTATTATTGGAATTTTTGCTCAAGTTCTGATATATATATTCTCC
CCGGAAAACGTCTCTGTCGTTTGACACCGTGGCTGTTGAGAGGAAATTGA
ATTTTGCTATCTTGGAGGTATATTTCACCGGAGATTGTTACATGCTTGCA
TGCGTGTTTGCCACGACAGATTCGCTGCCGAACCTGAAGACCAGCTGGGA
CAACCTGATGTGGAATCTGGAGTTCGATGACGATGATACAGAGAGCCAGA
CTCTCATGGATGCAGCAAAGGAAGGTGTTTCGGCTGCTCTCGTCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig24022:879..1875+

>mRNA_H-paniculata_contig24022.6502.1 ID=mRNA_H-paniculata_contig24022.6502.1|Name=mRNA_H-paniculata_contig24022.6502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig24022:879..1875+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTGGAGGCTGCTTCGACGAGTCATGGGTATTCACAAGGATGATGC
CGTGGCGTCGAACAGGCTGGTGCTTGCGGAGGAGTTGGCGCAAAATATGT
TGAAGGCTGATGATGTCTTGGAGGCTGCTTCGACGAGTCATGGGTATTCA
CAAGGATGATGCCGTGGCGTCGAACAGGCTGGTGCTTGCGGAGGAGTTGG
CGCAAAATATGTTGAAGGCTGATGATTCGCTGCCGAACCTGAAGACCAGC
TGGGACAACCTGATGTGGAATCTGGAGTTCGATGACGATGATACAGAGAG
CCAGACTCTCATGGATGCAGCAAAGGAAGGTGTTTCGGCTGCTCTCGTCG
AGATTCGCTGCCGAACCTGAAGACCAGCTGGGACAACCTGATGTGGAATC
TGGAGTTCGATGACGATGATACAGAGAGCCAGACTCTCATGGATGCAGCA
AAGGAAGGTGTTTCGGCTGCTCTCGTCGAG
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