mRNA_H-paniculata_contig24013.6500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig24013.6500.1
Unique NamemRNA_H-paniculata_contig24013.6500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24013.6500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig24013contigH-paniculata_contig24013:1646..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size153
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig24013.6500.1prot_H-paniculata_contig24013.6500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig24013 1646..3197 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.4189775-CDS-H-paniculata_contig24013:1645..17831622929689.4189775-CDS-H-paniculata_contig24013:1645..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24013 1646..1783 -
1691480968.275125-CDS-H-paniculata_contig24013:1645..17831691480968.275125-CDS-H-paniculata_contig24013:1645..1783Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24013 1646..1783 -
1622929689.4351237-CDS-H-paniculata_contig24013:3182..31971622929689.4351237-CDS-H-paniculata_contig24013:3182..3197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24013 3183..3197 -
1691480968.2836554-CDS-H-paniculata_contig24013:3182..31971691480968.2836554-CDS-H-paniculata_contig24013:3182..3197Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig24013 3183..3197 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929689.4504206-UTR-H-paniculata_contig24013:3197..32191622929689.4504206-UTR-H-paniculata_contig24013:3197..3219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24013 3198..3219 -
1691480968.291222-UTR-H-paniculata_contig24013:3197..32191691480968.291222-UTR-H-paniculata_contig24013:3197..3219Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig24013 3198..3219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig24013.6500.1

>prot_H-paniculata_contig24013.6500.1 ID=prot_H-paniculata_contig24013.6500.1|Name=mRNA_H-paniculata_contig24013.6500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
MQEHVANQQWFHLYCLLTGEWQGTAEEMGGEVKNVLGVQPSSISSVPDED
S
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mRNA from alignment at H-paniculata_contig24013:1646..3219-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig24013.6500.1 ID=mRNA_H-paniculata_contig24013.6500.1|Name=mRNA_H-paniculata_contig24013.6500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1574bp|location=Sequence derived from alignment at H-paniculata_contig24013:1646..3219- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGGAAATCATCAAATACAAGATGCAGGAGCATGTGGTGCGTTCTTTCG
TGCTTGTTGCGTGCAAACGCTTTGGTGACTACAAGTAATTGCCCTATATG
TGTCGAACGCCTTTTAGCAAAAATACGCCGGTGCAGATTGCTTGCAATGT
ATTCCATCGCTCAACTGGACTTTATGAGGTACAGCTTGGAAACGAACACG
GAATGAGACATGTGCTGCTATTCAACACTGAGACTGGCAACCCTTGAGAA
AGTATTCCAGTAAGGAAGACGTTCCGAATGAAGAAAAAAAGCTGTCCTAT
TTCCATGAGGATCAAGTAAGCTTCCACTCTAATTTTTTACTGACGGAACT
CCATGATTTGAAGCCTCTCACATTCAGAATGTTTGTTTCACGTCCTGGTC
GTGAACGCTTTTCGCCTCGATTTATTGACGTGAATAGTGCATGCGCCATA
ATGCTAATAATGGTTTGCATGAGGTGTTGCGTGCCTCATTGGCTGCTCGT
ATAAATACCGCCAGGTATGTATCGATGAGTGTCGTAAGCCAGGTGATGAA
AATAAGCTATCTTACGTTCGTGAGGACTATTAAGCAGATAACTCTAATTT
TTTCCCTGATGGCTGCCGTGAAATCATGATTCACGTACATTACCATGGAT
ACTCTGGCGATAATTTGCAAGAGGCTATTGTGAGCAGCCCCCCTCATCGA
CTTGGTGTTCTTCCGCAATCCAGTGAAGTATGTCGCGAATGATCGTGATG
TGTTGATATTTTTCCTTGATGCGATCGATTTCTGCGAGTTCCAGGCATAC
TGGGTGCTTGTTCGATAACTTTTGTAATCGTCTCCCCTTGATGAGAACGA
CTGCCCGTCAATTTCGCACGGTGCAAAGCATGGAACATTCTGTGTGGTCT
CCCGTCATTGCGCATCCATGAGATGATAAGCATTACATGAAAAAGGTACG
TTGAGTTAATTCGTACACGTGTGCAGTAGGCGTCACTCCCTGCTTGGCTG
TTCCACGAACGATAACAGTGTTCAATTGACAACAGTTCACAGGGGTGAAG
TCGTTTCGTGGCGATGGGTCGCCATCACGGTGCTCAGGTGGAGACGCGGG
AGGCCGCCGAAGAGGCCCGAGTGCGTGCACTCTTCCCTGACTACCACAGC
CACTTCGAGGATATCCCGGCAATTGACACGAACGGTACCATCCCGGAAGC
TGCCGTGGCCGCTGCTTCTACAGCAGACAGTGATGATGTGTGATGGCGGG
CTATCGAGTTGAAGAGCTGGCCGCTGCTGCTTGATAGACAGGAAAAAACA
TTCGTTTTGAAAGTGTAATTTGGTTGCTTGTGTTGTAGGTTGTACGTCGG
TGATCGTGCACTGGAAGTTATCCATAATGACAAGTGCAAGGTTAATGTTG
CCGTGAACGCGTACACCTTTTGCCCCGACGCTGCAGGCGAATCAACAGTG
GTTTCATCTCTACTGCCTACTCACTGGAGAATGGCAGGGGACAGCGGAAG
AGATGGGTGGAGAAGTCAAGAATGTCCTTGGAGTACAACCGTCATCCATC
TCGAGTGTACCTGATGAAGATTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig24013:1646..3219-

>mRNA_H-paniculata_contig24013.6500.1 ID=mRNA_H-paniculata_contig24013.6500.1|Name=mRNA_H-paniculata_contig24013.6500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig24013:1646..3219- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGAGCATGTGATGCAGGAGCATGTGGCGAATCAACAGTGGTTTCA
TCTCTACTGCCTACTCACTGGAGAATGGCAGGGGACAGCGGAAGAGATGG
GTGGAGAAGTCAAGAATGTCCTTGGAGTACAACCGTCATCCATCTCGAGT
GTACCTGATGAAGATTCTGCGAATCAACAGTGGTTTCATCTCTACTGCCT
ACTCACTGGAGAATGGCAGGGGACAGCGGAAGAGATGGGTGGAGAAGTCA
AGAATGTCCTTGGAGTACAACCGTCATCCATCTCGAGTGTACCTGATGAA
GATTCT
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