mRNA_H-paniculata_contig23992.6491.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23992.6491.1
Unique NamemRNA_H-paniculata_contig23992.6491.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig23992.6491.1 vs. uniprot
Match: A0A6H5KMN6_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.030e-9
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 3 
Query:    3 ANRAKNKVMQQTKEEEAKAYTMITSFCNLVHRNCPGSVAVVERDNDGRFKRVFFMLGAVAHVA 191
            A+R K    + +KE+    Y ++TS+C  + ++CPGS+AVV+R+  GRF+ +FFMLG  A+ A
Sbjct:  124 ASRLKVAATRASKEQLEHGYRIMTSYCKELVKDCPGSIAVVQRETTGRFRSLFFMLGRAAYAA 186
[Close]
BLAST of mRNA_H-paniculata_contig23992.6491.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.620e-9
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 3 
Query:    3 ANRAKNKVMQQTKEEEAKAYTMITSFCNLVHRNCPGSVAVVERDNDGRFKRVFFMLGAVAHVA 191
            A+R K    + +KE+    Y ++ S+C  + ++CPGSVAVVER+  GRF+ VF MLG  AH A
Sbjct:  124 ASRLKVAATRASKEQLEHGYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLGRAAHAA 186
[Close]
BLAST of mRNA_H-paniculata_contig23992.6491.1 vs. uniprot
Match: A0A6H5JW23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW23_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.130e-8
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 3 
Query:   36 TKEEEAKAYTMITSFCNLVHRNCPGSVAVVERDNDGRFKRVFFMLGAVAHVA 191
            +KE+    Y ++ S+C  + ++CPGSVAVVER+  GRF+ +F MLG  AH A
Sbjct:  115 SKEQLEHGYRIMDSYCRELVKDCPGSVAVVERETTGRFRSIFVMLGRAAHAA 166
[Close]
BLAST of mRNA_H-paniculata_contig23992.6491.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.530e-7
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 3 
Query:    3 ANRAKNKVMQQTKEEEAKAYTMITSFCNLVHRNCPGSVAVVERDNDGRFKRVFFMLGAVAHVA 191
            A+R K    + + E+    Y ++ S+C  + ++CPGSVAVVER+  GRF+ VF ML   AH A
Sbjct:  127 ASRLKVAAARASNEQLEHGYRIMDSYCKELVKDCPGSVAVVERETTGRFRSVFVMLRRAAHAA 189
[Close]
BLAST of mRNA_H-paniculata_contig23992.6491.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-6
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 3 
Query:    3 ANRAKNKVMQQTKEEEAKAYTMITSFCNLVHRNCPGSVAVVERDNDGRFKRVFFMLGAVAHVA 191
            A+R K    + +KE+    Y ++ S+C  + ++CPG VAVV+R+  GRF  VF MLG  A  A
Sbjct:  166 ASRLKVAAKRASKEQLEHGYRIMDSYCKELVKDCPGPVAVVQRETTGRFPSVFVMLGRAARAA 228
[Close]
BLAST of mRNA_H-paniculata_contig23992.6491.1 vs. uniprot
Match: A0A6H5JUL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL3_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.700e-5
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 3 
Query:    3 ANRAKNKVMQQTKEEEAKAYTMITSFCNLVHRNCPGSVAVVER--DNDGRFKRVFFMLGAVAHVAAN 197
            + RAK ++   TK +EA A + +      + R+CPGS+A VE     D RF R F MLG  A++AA+
Sbjct:  127 SQRAKKRIANATKGDEATAISRLPFLFEGIERDCPGSIATVEERMSPDNRFVRSFLMLGKAAYLAAH 193
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23992.6491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KMN6_9PHAE6.030e-942.86MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5LCT1_9PHAE7.620e-946.03MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JW23_9PHAE3.130e-848.08MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L490_9PHAE4.530e-742.86MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUM0_9PHAE2.920e-641.27MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUL3_9PHAE1.700e-540.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23992contigH-paniculata_contig23992:1893..2889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size199
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23992.6491.1prot_H-paniculata_contig23992.6491.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23992 1919..2889 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.5637987-UTR-H-paniculata_contig23992:1892..19181622929686.5637987-UTR-H-paniculata_contig23992:1892..1918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23992 1893..1918 +
1691480967.252643-UTR-H-paniculata_contig23992:1892..19181691480967.252643-UTR-H-paniculata_contig23992:1892..1918Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23992 1893..1918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.5783777-CDS-H-paniculata_contig23992:1918..20201622929686.5783777-CDS-H-paniculata_contig23992:1918..2020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23992 1919..2020 +
1691480967.2679858-CDS-H-paniculata_contig23992:1918..20201691480967.2679858-CDS-H-paniculata_contig23992:1918..2020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23992 1919..2020 +
1622929686.5939896-CDS-H-paniculata_contig23992:2820..28891622929686.5939896-CDS-H-paniculata_contig23992:2820..2889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23992 2821..2889 +
1691480967.276432-CDS-H-paniculata_contig23992:2820..28891691480967.276432-CDS-H-paniculata_contig23992:2820..2889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23992 2821..2889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23992.6491.1

>prot_H-paniculata_contig23992.6491.1 ID=prot_H-paniculata_contig23992.6491.1|Name=mRNA_H-paniculata_contig23992.6491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MQQTKEEEAKAYTMITSFCNLVHRNCPGSVAVVERDNDGRFKRVFFMLGA
VAHVAAN
back to top

mRNA from alignment at H-paniculata_contig23992:1893..2889+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23992.6491.1 ID=mRNA_H-paniculata_contig23992.6491.1|Name=mRNA_H-paniculata_contig23992.6491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=997bp|location=Sequence derived from alignment at H-paniculata_contig23992:1893..2889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCAAACCGCGCGAAGAATAAGGTAATGCAGCAGACAAAGGAGGAAGAA
GCCAAGGCCTATACCATGATCACCTCGTTCTGCAACCTGGTGCATCGAAA
CTGCCCAGGCTCGGTTGCGGTTGTAGAGGTGAGAAGGCGAAGCACGTTTG
CTGGCGATGCATAATTATGTCGCACGTGTGATATACTGCACACGACTCAA
ACTGTATGTGATTCCAAATCTACTCTCTACTACTTGGTCTGGCGTACACT
TGGTATCTGTCCCCGTGGGTGAAGCATATACACTGAGGCTATCCGTAAGG
TTCCACTTGTACGACAGTACTGTGTGACGAAGGCGACGCGAAAGGCACTA
CTTAGGTCACGTGTACGGTAGTGCCTGCCATCGGTACAATTTAGCCCATT
GTTACTGAATGTTTTGTTTCTTATCACAATATTTGACTACAATAGAAGTC
CCGTTGGTGGTAGAGTAGAACCGGAAATGCATGCTGCATGTACATCGATA
ATGTTTCGGCGCACATACTGTGGTAGGTACAATCGTGACCGTACGTCCAA
CACGAAAGAAAGACACTACAACCCAACTGACAGTAGCGATAGTCACAACA
CATCTAGTTGACGTGCGGTAGACCGACCGACCGCTTCCCCCCACGCTGAC
CTCTTGCACTATTAAGGTCGCGATGCCCTCGCACTATTTGGGTCGTTGTT
GAGCCCAACTGTCCCTACTGCTGCTGCACTTCCACTGTCATAGTATAAAA
AATTGCCATCTCAGTCGGCAGAGCAATTAGACGGTTTGTAAGCAGCAGTA
CCCTCACGAAATGTATTCGGAGGTGGTGAAACACGTCGTTCGTCGTTGAT
AACGGTGCCTTCTCTCTCTTTGCTGTATTTTATTTCGTCTTCGCGTCTGT
TTTTCGTTACGACTTCTGTACTGCCCAGCGTGACAACGATGGGAGGTTCA
AGCGTGTTTTCTTCATGCTTGGAGCGGTGGCCCACGTGGCTGCCAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23992:1893..2889+

>mRNA_H-paniculata_contig23992.6491.1 ID=mRNA_H-paniculata_contig23992.6491.1|Name=mRNA_H-paniculata_contig23992.6491.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig23992:1893..2889+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCAGACAAAGGAGGAAGAAGCCAAGGCCTATACCATGATCACCTC
GTTCTGCAACCTGGTGCATCGAAACTGCCCAGGCTCGGTTGCGGTTGTAG
AGATGCAGCAGACAAAGGAGGAAGAAGCCAAGGCCTATACCATGATCACC
TCGTTCTGCAACCTGGTGCATCGAAACTGCCCAGGCTCGGTTGCGGTTGT
AGAGCGTGACAACGATGGGAGGTTCAAGCGTGTTTTCTTCATGCTTGGAG
CGGTGGCCCACGTGGCTGCCAACCGTGACAACGATGGGAGGTTCAAGCGT
GTTTTCTTCATGCTTGGAGCGGTGGCCCACGTGGCTGCCAAC
back to top