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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Viridiplantae |
| Seed ortholog score | 82.0 |
| Seed ortholog evalue | 8.2e-13 |
| Seed eggNOG ortholog | 28532.XP_010528320.1 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 28PT9@1,2QSB2@2759,37M9P@33090,3GAPR@35493,3HNKW@3699 |
| Best tax level | Brassicales |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 2212 |
| Cds size | 1443 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2399.6489.1 >prot_H-paniculata_contig2399.6489.1 ID=prot_H-paniculata_contig2399.6489.1|Name=mRNA_H-paniculata_contig2399.6489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=481bp
MRAAALSMQEERSYDWLYSQLSALALRTATQLMAPPVLFTPAGLREGFQP
WPYPARTKGWSNYITIEPGTEPKETVVVSLFILCDPAPCPPQEPQAWANL
QELLQDMGASSDAKASFPSITVVVEEVDLLLSPLLATGLQQAMSASHWGS
TLASKELRYWLRRFIDARATQYRESKRNEADNEEIRRGSTRTIPLFVISI
GTDVPILLENSMRSTVFPDMVISIAGIRTGTVNIDSGFECANRTVIFPTH
TDSGSTDFLRETVASLAQAIWGAPPRTLAWDPLTDAFGTDYLWATGANIQ
SPLSSYASFTFPERDTYIRTHVLGRVDAAIRAARIILEQVAAVEPVLSNV
LNAGDNALAERQWHRVKRDLRNCLHDLAMHREQSALGNARQLEASMGELG
HTLSNGYGNGMYRRSCSCGEGGNGRRGVDGSERLGERRRGLDAYSMFSNV
LFAIGIVCAILAMWCKLTRPVGGWKKHKST* back to topmRNA from alignment at H-paniculata_contig2399:11067..13739+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2399.6489.1 ID=mRNA_H-paniculata_contig2399.6489.1|Name=mRNA_H-paniculata_contig2399.6489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2673bp|location=Sequence derived from alignment at H-paniculata_contig2399:11067..13739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCATTTCGACGCGCTCGTGGAAGGACTGTCGACAGACGGAAAGGGAGGGG
TACCCTTGATACTCGTGAGTGTTTTTAGAGGTACCACTGCACTGTGTATA
TTGGGCTACACCTTTCGTCGTGGTTACGCTACTTTCTTTTTCAGTCACCT
GTGTGGTTTCGAGGCTCCCGGTACAGTTGCCGGACGTCTCACAATGGTCG
TGCCTTGATTATATTTAGTGGCACCTATCCTGCACCTGCCATCGTTTTTC
GTGTAAACGACGTTGCTTTCTGATCAGGTACCACATGTTTGTACGTCCAC
AAATGTCGAGGTATATCTATATACTTCACAGTATATTGCTTCGTGGTGGT
CATTCAGTGCTTTCTTGGGCAAGATGTGGATCTTTCAGGTCCGTCTAGAT
GCGGGAGATGTCTTTATTCTCGGCATTTTCCCAAATGAGCACCAATTGTT
TCCACGTTCTTCTTGCTCAATTGTTGCACTTCGGTTCCTCCGCTGCACCT
TTCGCCCCCCTACCCTTTGCACCAGGTAGATCAAAGATACGAAAACGAAC
TTTCCAAATTACAAGTTCATCAGAAAATCCTGTTCCATGTCGAACACGCT
AGCATACACGAGAAACGGCCGCTGAGTCATCACATCAGGGAAGCGGTAGA
GTCGGCAATCCAATTGTCGACGTCGAGCGGCGCTGAAAACGAGGTGGTTG
GCGTGCCACGATTAGCTGTAGATGAAGCAATCCATTCCCATTATAAAGCG
CGACGGAAGGCTTCCCTCTGCACGTTGTACCTCGTGCACCCTGGTGTACA
GAGCCGGTACAAGTATATACATGGCACCTCCGTCAGTGCTGCTGCTCCAC
CAAGCAGCACACACGGAGGATCGAAAAGCACATTACCGAACGGATGCAGT
TATGTGGGATGGGTTGGAGAGTATGAGCGGTACGTGTGGTTGGACCTCGG
GGCAGATTTGGCATCAGGGTGGGGTCCGCGCAGTCGCTCAATCGGTGTTG
TGTCCCGCCTCACTCTTCCAGACATGAGGGCTGCTGCACTATCCATGCAA
GAGGAAAGAAGCTATGACTGGCTCTATTCACAGCTCTCTGCACTGGCACT
TCGAACAGCAACTCAGTTGATGGCCCCGCCGGTGCTCTTCACTCCTGCAG
GACTACGCGAGGGCTTCCAGCCTTGGCCATATCCCGCGAGAACGAAAGGT
TGGTCAAATTACATCACCATAGAGCCAGGCACTGAACCTAAAGAGACTGT
TGTCGTGAGCTTATTTATTTTGTGCGACCCAGCGCCGTGTCCGCCACAAG
AGCCTCAGGCGTGGGCGAATTTACAAGAACTACTGCAAGATATGGGTGCG
AGCAGTGACGCAAAGGCGTCCTTCCCGAGCATTACAGTAGTGGTAGAGGA
GGTTGACCTGTTGCTATCTCCGCTGCTAGCCACGGGACTTCAGCAAGCGA
TGAGCGCGAGTCACTGGGGCTCAACACTTGCCTCGAAGGAGCTTCGATAT
TGGCTACGACGATTCATCGACGCGAGGGCCACCCAATATAGAGAGAGCAA
GCGTAACGAGGCGGATAATGAGGAGATTCGCCGTGGCAGCACTCGGACCA
TTCCTCTATTCGTGATTAGTATTGGTACAGACGTGCCAATCCTCCTGGAG
AACTCGATGCGGTCGACCGTTTTCCCTGACATGGTGATCTCCATCGCGGG
CATCCGCACTGGCACTGTCAACATCGACTCCGGGTTTGAGTGTGCAAACC
GAACCGTGATATTTCCCACTCATACTGATAGCGGAAGCACTGACTTCCTC
CGGGAGACAGTCGCTTCGCTCGCGCAGGCGATATGGGGAGCTCCTCCGCG
AACTCTCGCGTGGGACCCCCTAACCGATGCCTTCGGCACCGACTACCTGT
GGGCGACGGGCGCCAACATACAATCTCCGCTGTCTTCGTATGCTTCGTTC
ACATTTCCTGAACGCGATACGTACATTCGGACACACGTGCTCGGTAGGGT
GGATGCTGCGATCCGAGCGGCACGGATTATTCTGGAACAAGTGGCTGCAG
TGGAGCCCGTGCTGTCAAACGTGCTGAACGCTGGAGACAACGCGCTCGCC
GAAAGGCAGTGGCACCGCGTGAAGCGTGACCTCAGGAATTGCCTTCATGA
CCTAGCGATGCATCGAGAGCAGAGTGCCCTTGGAAACGCCCGCCAGCTTG
AGGCCAGTATGGGAGAACTGGGGCACACTTTGTCAAACGGCTACGGCAAT
GGGATGTACCGTAGATCCTGTTCGTGTGGAGAGGGGGGCAACGGCCGCCG
TGGTGTGGATGGTAGCGAACGTCTAGGAGAACGACGGCGAGGTTTAGATG
CTTACAGCATGTTTAGTAATGTATTGTTTGCCATAGGCATAGTGTGTGCG
ATTTTGGCTATGTGGTGTAAGCTTACGCGTCCGGTAGGTGGCTGGAAAAA
GCACAAAAGCACCTGATACTATTGCTGTATGCTATTTAGTTACCACCAGG
TTTATTACGAATTAATTGACACAACGCCCCTGTTGTGCCGGAGCTTTTTC
CCGAAGGAGACAGTAATCTCACAAGATCTGACATTAGGTGTCGAGCGATC
CAGTCGTTTCATGTGGAGAACCATGCATGTCTGTGGTGAACTGGCGGTCT
GAACAGCGATGGCTCCTTATCCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig2399:11067..13739+ >mRNA_H-paniculata_contig2399.6489.1 ID=mRNA_H-paniculata_contig2399.6489.1|Name=mRNA_H-paniculata_contig2399.6489.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2886bp|location=Sequence derived from alignment at H-paniculata_contig2399:11067..13739+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGCTGCTGCACTATCCATGCAAGAGGAAAGAAGCTATGACTGGCT
CTATTCACAGCTCTCTGCACTGGCACTTCGAACAGCAACTCAGTTGATGG
CCCCGCCGGTGCTCTTCACTCCTGCAGGACTACGCGAGGGCTTCCAGCCT
TGGCCATATCCCGCGAGAACGAAAGGTTGGTCAAATTACATCACCATAGA
GCCAGGCACTGAACCTAAAGAGACTGTTGTCGTGAGCTTATTTATTTTGT
GCGACCCAGCGCCGTGTCCGCCACAAGAGCCTCAGGCGTGGGCGAATTTA
CAAGAACTACTGCAAGATATGGGTGCGAGCAGTGACGCAAAGGCGTCCTT
CCCGAGCATTACAGTAGTGGTAGAGGAGGTTGACCTGTTGCTATCTCCGC
TGCTAGCCACGGGACTTCAGCAAGCGATGAGCGCGAGTCACTGGGGCTCA
ACACTTGCCTCGAAGGAGCTTCGATATTGGCTACGACGATTCATCGACGC
GAGGGCCACCCAATATAGAGAGAGCAAGCGTAACGAGGCGGATAATGAGG
AGATTCGCCGTGGCAGCACTCGGACCATTCCTCTATTCGTGATTAGTATT
GGTACAGACGTGCCAATCCTCCTGGAGAACTCGATGCGGTCGACCGTTTT
CCCTGACATGGTGATCTCCATCGCGGGCATCCGCACTGGCACTGTCAACA
TCGACTCCGGGTTTGAGTGTGCAAACCGAACCGTGATATTTCCCACTCAT
ACTGATAGCGGAAGCACTGACTTCCTCCGGGAGACAGTCGCTTCGCTCGC
GCAGGCGATATGGGGAGCTCCTCCGCGAACTCTCGCGTGGGACCCCCTAA
CCGATGCCTTCGGCACCGACTACCTGTGGGCGACGGGCGCCAACATACAA
TCTCCGCTGTCTTCGTATGCTTCGTTCACATTTCCTGAACGCGATACGTA
CATTCGGACACACGTGCTCGGTAGGGTGGATGCTGCGATCCGAGCGGCAC
GGATTATTCTGGAACAAGTGGCTGCAGTGGAGCCCGTGCTGTCAAACGTG
CTGAACGCTGGAGACAACGCGCTCGCCGAAAGGCAGTGGCACCGCGTGAA
GCGTGACCTCAGGAATTGCCTTCATGACCTAGCGATGCATCGAGAGCAGA
GTGCCCTTGGAAACGCCCGCCAGCTTGAGGCCAGTATGGGAGAACTGGGG
CACACTTTGTCAAACGGCTACGGCAATGGGATGTACCGTAGATCCTGTTC
GTGTGGAGAGGGGGGCAACGGCCGCCGTGGTGTGGATGGTAGCGAACGTC
TAGGAGAACGACGGCGAGGTTTAGATGCTTACAGCATGTTTAGTAATGTA
TTGTTTGCCATAGGCATAGTGTGTGCGATTTTGGCTATGTGGTGTAAGCT
TACGCGTCCGGTAGGTGGCTGGAAAAAGCACAAAAGCACCTGAATGAGGG
CTGCTGCACTATCCATGCAAGAGGAAAGAAGCTATGACTGGCTCTATTCA
CAGCTCTCTGCACTGGCACTTCGAACAGCAACTCAGTTGATGGCCCCGCC
GGTGCTCTTCACTCCTGCAGGACTACGCGAGGGCTTCCAGCCTTGGCCAT
ATCCCGCGAGAACGAAAGGTTGGTCAAATTACATCACCATAGAGCCAGGC
ACTGAACCTAAAGAGACTGTTGTCGTGAGCTTATTTATTTTGTGCGACCC
AGCGCCGTGTCCGCCACAAGAGCCTCAGGCGTGGGCGAATTTACAAGAAC
TACTGCAAGATATGGGTGCGAGCAGTGACGCAAAGGCGTCCTTCCCGAGC
ATTACAGTAGTGGTAGAGGAGGTTGACCTGTTGCTATCTCCGCTGCTAGC
CACGGGACTTCAGCAAGCGATGAGCGCGAGTCACTGGGGCTCAACACTTG
CCTCGAAGGAGCTTCGATATTGGCTACGACGATTCATCGACGCGAGGGCC
ACCCAATATAGAGAGAGCAAGCGTAACGAGGCGGATAATGAGGAGATTCG
CCGTGGCAGCACTCGGACCATTCCTCTATTCGTGATTAGTATTGGTACAG
ACGTGCCAATCCTCCTGGAGAACTCGATGCGGTCGACCGTTTTCCCTGAC
ATGGTGATCTCCATCGCGGGCATCCGCACTGGCACTGTCAACATCGACTC
CGGGTTTGAGTGTGCAAACCGAACCGTGATATTTCCCACTCATACTGATA
GCGGAAGCACTGACTTCCTCCGGGAGACAGTCGCTTCGCTCGCGCAGGCG
ATATGGGGAGCTCCTCCGCGAACTCTCGCGTGGGACCCCCTAACCGATGC
CTTCGGCACCGACTACCTGTGGGCGACGGGCGCCAACATACAATCTCCGC
TGTCTTCGTATGCTTCGTTCACATTTCCTGAACGCGATACGTACATTCGG
ACACACGTGCTCGGTAGGGTGGATGCTGCGATCCGAGCGGCACGGATTAT
TCTGGAACAAGTGGCTGCAGTGGAGCCCGTGCTGTCAAACGTGCTGAACG
CTGGAGACAACGCGCTCGCCGAAAGGCAGTGGCACCGCGTGAAGCGTGAC
CTCAGGAATTGCCTTCATGACCTAGCGATGCATCGAGAGCAGAGTGCCCT
TGGAAACGCCCGCCAGCTTGAGGCCAGTATGGGAGAACTGGGGCACACTT
TGTCAAACGGCTACGGCAATGGGATGTACCGTAGATCCTGTTCGTGTGGA
GAGGGGGGCAACGGCCGCCGTGGTGTGGATGGTAGCGAACGTCTAGGAGA
ACGACGGCGAGGTTTAGATGCTTACAGCATGTTTAGTAATGTATTGTTTG
CCATAGGCATAGTGTGTGCGATTTTGGCTATGTGGTGTAAGCTTACGCGT
CCGGTAGGTGGCTGGAAAAAGCACAAAAGCACCTGA back to top
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