mRNA_H-paniculata_contig23958.6481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 378 bits (971), Expect = 1.080e-123 Identity = 197/475 (41.47%), Postives = 294/475 (61.89%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 1407
+P K++GT++VFK K DG+FKARLVV G Q G D G ++APVCR+ S R+ A+ +W ++ LDV AFLN VY + APG + TG+P V L++S+YGL QSP +WN T+D L G+ T SDPC+Y S + ++L+++VDDILITG +L+ + +L ++F +TD+GEV ILG++V R+ ++GTL +SQ YV + LERFGM ANP T G + +T +L K YQ+M GS+++L QCT+FD+ ++ Q ++ S P Q ++ A K +LRYL+G P +PI+Y RGQ L F DSS+ RSTTG +FFLA GL+ + ++ Q + A ST EAE+ AL+ A++ Y+ N EL F+ + + SD+ GAL +A N+ +S R+KH+A+R+ +R+ + Q+ + H S QLADI TK+ + F + ++ F
Sbjct: 18 VPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 384 bits (987), Expect = 4.740e-123 Identity = 200/467 (42.83%), Postives = 292/467 (62.53%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQL 1383
+P D + TR+VFK+KAD +FKARLV G Q G G +APV RL S R+L A+A W V+ LDV AFLN VY + APG E+ PTTG+ V L+KS+YGL QSP++WN I++ L G+ T SDPC+Y S D +L+++VDDILITG +++ + +LM+ F +TD+GEV ++G+EV R+ + GTL +SQ Y +L+R+GM ANP TPG + +T LL + +QA+ GSL++L QCTR+D+ ++V Q R + P Q H+ A K +LRYL+G PD+PI+Y +G+ L F DSS+ RSTTG +FFL GL+ + ++ Q + A +T EAEL AL+ A++ Y+ N E+GF+ + + SD+ GAL +A+N+ +S+R+KHIA+RF LR+ + +++ + H SA LADI TKH + F +
Sbjct: 259 VPKDEDIFDTRFVFKIKADSRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATI 725
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 381 bits (978), Expect = 4.310e-122 Identity = 197/475 (41.47%), Postives = 295/475 (62.11%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 1407
+P K++GT++VFK DG+FKARLVV G Q G D G ++APVCR+ S R+ A+ +W ++ LDV AFLN VY + APG + TG+P V L++S+YGL QS +WN T+D L +G+ T SDPC+Y S + ++L+++VDDILITG +L+ + +L ++F +TD+GEV ILG++V R+ ++GTL +SQ YV ++LERFGM ANP TPG + +T +L K YQ+M GS+++L QCTRFD+ ++ Q ++ S P Q ++ A K +LRYL+G P +PI+Y RGQ L F DSS+ RSTTG +FFLA GL+ + ++ Q + A ST EAE+ AL+ A++ Y+ N EL F+ + + SD+ GAL +A N+ +S R+KH+A+R+ +R+ + Q+ + H S QLADI TK+ + F + ++ F
Sbjct: 226 VPEGEKILGTKFVFKKTLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 384 bits (987), Expect = 1.060e-121 Identity = 198/475 (41.68%), Postives = 295/475 (62.11%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 1407
+P K++GT++VFK K DG+FKARLVV G Q G D G ++APVCR+ S R+ A+ +W ++ LDV AFLN VY + APG + TG+P V L++S+YGL QSP +WN T+D L G+ T SDPC+Y S + ++L+++VDDILITG +L+ + +L ++F +TD+GEV ILG++V R+ ++GTL +SQ YV ++LERFGM ANP TPG + +T +L K YQ+M GS+++L QCTRFD+ ++ Q ++ S P Q ++ A K +LRYL+G P +PI+Y RGQ L F DSS+ RSTTG +FFLA GL+ + ++ Q + A ST EAE+ AL+ A++ Y+ N EL F+ + + SD+ GAL +A N+ +S R+KH+ +R+ +R+ + Q+ + H S QLADI TK+ + F + ++ F
Sbjct: 382 VPKGEKILGTKFVFKKKLDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 348 bits (892), Expect = 1.110e-109 Identity = 195/481 (40.54%), Postives = 278/481 (57.80%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRN-------------QLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGF--QLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQL 1383
+P K I ++WVFK KADG FK R+V QGW+Q+ G+DCGST+APVCR++S R++ + + +DV AFL ++QE V+ +Q PGFE G VM L KS+YGL QSP W +TID L +GF SDPC+Y N I L+L+VDD+L+ G + + + +L +F +TDLGE S LGM++ R+R+ TL +SQ Y S+LERFGMS + PT TPG ++ + + TLLD T++YQ +VGSL+++ Q R+DI ++ Q AR M+ P++ H+VA K LRYL G D I Y +G L F DS++ +ST+ + LAN + F S Q + A ST EAEL+A A K+ + N+ ELG + V DN LH N ++S+R+KHIA+RF +R+ + ++ I +V + D LADI TKH + F L
Sbjct: 170 VPPGRKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 649
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 357 bits (916), Expect = 3.140e-109 Identity = 195/483 (40.37%), Postives = 291/483 (60.25%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKG-------FCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGT-YLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 1407
+P K++GT++VFK K DG+FKARL V G Q G D + APVCR+ S R+ A+ +W ++ LDV AFLN VY + APG + T +P V L++S+YGL QSP +WN T+D L G+ T SDPC+Y S ++ ++ S++VDDILITG +L+ + +L ++F +TD+GEV ILG++V R+ ++GTL +SQ YV ++LERFGM ANP TPG + +T +L K YQ+M GS+++L QCTRFD+ ++ Q ++ S P Q ++ A K +LRYL+G P +PI+Y R Q L F DSS+ RSTTG +FFLA GL+ + ++ Q + A ST EAE+ AL+ A++ Y+ N EL F+ + + SD+ GAL +A N+ +S R+KH+A+R+ +R+ + Q+ + H S QLADI TK+ + F + ++ F
Sbjct: 607 VPKGEKILGTKFVFKKKLDGRFKARLAVGGHRQEPGQDYRN--APVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 1087
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 364 bits (935), Expect = 3.370e-109 Identity = 198/475 (41.68%), Postives = 283/475 (59.58%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGF--QLDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTF 1404
+P + K I ++WVFK KADG FK R+V QGW+Q+ G+DCGST+APVCR++S R++ + + +DV AFL ++QE V+ +Q PGFE G VM L KS+YGL QSP W +TID L +GF SDPC+Y N I L+L+VDD+L+ G + V+ +L +F +TDLGE SL+LGME+ R+R+ TL +SQ Y S+LERFG+S + PT TPG ++ + + TLLD T++YQ +VGSL+++ Q R+DI ++ Q AR M+ P++ H+VA K LRYL G D I Y +G L F DS++ +ST+ + LAN + F S Q + A ST EAEL+A A + + N+ ELGF + V DN LH N ++S+R+KHIA+RF +R+ + ++ I +V + D LADI TKH + F L + F
Sbjct: 1191 VPPERKRIKSKWVFKRKADGTFKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 349 bits (896), Expect = 3.100e-108 Identity = 196/470 (41.70%), Postives = 279/470 (59.36%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTTRSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRDWIRSNQLVIDHVASADQLADILTKHCERVVFTQLRSKVLTFG 1407
+P KV+GTR+VFK KAD +FK RLVVQG Q GID G +A VCR+ S R+ A+A + W V+ +DV VAFL + + V+ K APG + P TG V L++S+YGL QSP +W TID L +GF PT SDPC+Y GS DT ++L+L+V+DILI+G L+ D++ +L ++F ITD+GEV LILGM+V R+ + GTL +SQ YV S+LE GM + NP LL A +K YQ++ GSL++L QC R+D ++V Q R S P + H A K LRY++G PD+ II+ RG+ + F DSS+ G +P + +K E+EL A++ AK+ YL ++ L F+ L + SD+ G L LAAN+ +S+R+KHIA+RF L++ I+ + + HV + LADI TKH +R F + ++ FG
Sbjct: 420 VPKHEKVLGTRFVFKQKADERFKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPA--------------DELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSF--------------GAIPDN---RKSTTGLQVESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 333 bits (854), Expect = 2.260e-105 Identity = 176/414 (42.51%), Postives = 259/414 (62.56%), Query Frame = 1
Query: 1 MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGFQLDNF-EVRSDNRGALHLAAN 1224
+P +++GT++VFK K DG+FKA LVV G Q G D GS++APVCR+ S R+ + +W ++ LDV VAFLN VY + APG + TG+P V L++S+YGL QSP +WN T++ L+ G+ T DPC+Y S + ++L+++VDDILITG D+ L+D + +L ++F +TD+GEV ILG++V R+ ++GTL +SQ YV ++LERFGM ANP T G + +T +L K YQ+M S+++L QCTRFD+ ++ Q ++ S P Q +L A K +LRYL+G P +PI+Y RGQ L DSS+ RSTTG +FFLA GL+ + ++ Q + A ST EAE+ AL+ A++ Y+ N E F+ + + SD+ GAL +A N
Sbjct: 119 VPKGEEILGTKFVFKKKLDGRFKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAGN 531
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 345 bits (885), Expect = 1.080e-102 Identity = 181/414 (43.72%), Postives = 261/414 (63.04%), Query Frame = 1
Query: 58 GKFKARLVVQGWSQIHGIDCGSTFAPVCRLESQRLLLALATAKDWAVFALDVQVAFLNGELQESVYCKQAPGFEKTHPTTGQPYVMSLKKSIYGLRQSPNVWNHTIDNELRSMGFTPTISDPCIYSKGSNDTYIMLSLFVDDILITGPTDKLLMDVRNQLMNKFTITDLGEVSLILGMEVLRNRQEGTLQLSQYKYVLSVLERFGMSSANPTKTPGVKTDPTTTGEDSTLLDTAATKEYQAMVGSLIFLTQCTRFDICFSVTQAARFMSAPTQQHLVAVKRILRYLKGYPDMPIIYNRGQPPLKGFCDSSYTT-----RSTTGSMFFLANGLVPFSSRQQKIIADSTTEAELIALAACAKQGTYLLNICRELGFQ-LDNFEVRSDNRGALHLAANSNYSNRSKHIAIRFAALRD 1281
G+FKARLV G Q G G +APV RL S R+L A+A W V+ LDV AFLN VY + APG E+ PTTG+ V L+KS+YGL QSP++WN I++ L G+ T SDPC+Y S D +L+++VDDILITG +++ + +LM+ F +TD+GEV ++G+EV R+ + GTL +SQ Y +L+R+GM ANP TPG + +T LL + +QA+ GSL++L QCTR+D+ ++V Q R + P Q H+ A K +LRYL+G PD+PI+Y +GQ L F DSS+ RSTTG +FFL GL+ + ++ Q + A +T EAEL AL+ A++ Y+ N E+GF+ + + SD+ GAL +A+N+ +S+R+KHIA+RF LR+
Sbjct: 1057 GRFKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23958.6481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23958.6481.1 >prot_H-paniculata_contig23958.6481.1 ID=prot_H-paniculata_contig23958.6481.1|Name=mRNA_H-paniculata_contig23958.6481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=471bp MPSDHKVIGTRWVFKVKADGKFKARLVVQGWSQIHGIDCGSTFAPVCRLEback to top mRNA from alignment at H-paniculata_contig23958:1490..2902+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23958.6481.1 ID=mRNA_H-paniculata_contig23958.6481.1|Name=mRNA_H-paniculata_contig23958.6481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1413bp|location=Sequence derived from alignment at H-paniculata_contig23958:1490..2902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23958:1490..2902+ >mRNA_H-paniculata_contig23958.6481.1 ID=mRNA_H-paniculata_contig23958.6481.1|Name=mRNA_H-paniculata_contig23958.6481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2826bp|location=Sequence derived from alignment at H-paniculata_contig23958:1490..2902+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |