mRNA_H-paniculata_contig23941.6479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23941.6479.1
Unique NamemRNA_H-paniculata_contig23941.6479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23941.6479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23941contigH-paniculata_contig23941:311..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23941.6479.1prot_H-paniculata_contig23941.6479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23941 436..798 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929685.2342432-UTR-H-paniculata_contig23941:310..4351622929685.2342432-UTR-H-paniculata_contig23941:310..435Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23941 311..435 +
1691480966.676077-UTR-H-paniculata_contig23941:310..4351691480966.676077-UTR-H-paniculata_contig23941:310..435Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23941 311..435 +
1622929685.2670984-UTR-H-paniculata_contig23941:798..8381622929685.2670984-UTR-H-paniculata_contig23941:798..838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23941 799..838 +
1691480966.6962056-UTR-H-paniculata_contig23941:798..8381691480966.6962056-UTR-H-paniculata_contig23941:798..838Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23941 799..838 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929685.2548513-CDS-H-paniculata_contig23941:435..7981622929685.2548513-CDS-H-paniculata_contig23941:435..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23941 436..798 +
1691480966.6861222-CDS-H-paniculata_contig23941:435..7981691480966.6861222-CDS-H-paniculata_contig23941:435..798Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23941 436..798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23941.6479.1

>prot_H-paniculata_contig23941.6479.1 ID=prot_H-paniculata_contig23941.6479.1|Name=mRNA_H-paniculata_contig23941.6479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MAHCHFFPYSFCERLLRQNILYIVRFRLVQLVSDLTKGLPIIRELRGTRY
VDGVEESIGGMCTRVMRVFCVCVVVEHSTTHVRSRRFNAFTFTPVGFKFH
SSRRWLLIMSRKKHFQKRQL*
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mRNA from alignment at H-paniculata_contig23941:311..838+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23941.6479.1 ID=mRNA_H-paniculata_contig23941.6479.1|Name=mRNA_H-paniculata_contig23941.6479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=528bp|location=Sequence derived from alignment at H-paniculata_contig23941:311..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCGTTAAGTGGATCTCTCCCTGCTGTTGTTCTTTGTTGCCAGTCGGT
CTGGGGGAGGGATTGTCCGTGCATGCCTGGTGCTGGCGGAATGCTGATCG
CGGTCCGGATCTCTCGTCGTGACCGATGGCGCACTGCCACTTTTTCCCAT
ATTCTTTTTGCGAACGGCTGCTGAGGCAGAATATATTGTACATAGTGCGG
TTTCGCTTGGTTCAGTTGGTTAGCGATTTGACCAAAGGACTCCCAATAAT
TCGTGAGCTTCGTGGCACGCGCTATGTTGACGGAGTTGAAGAGTCAATAG
GGGGGATGTGTACCCGCGTTATGCGTGTTTTCTGTGTTTGTGTTGTTGTC
GAGCATTCGACCACACACGTTCGATCACGTCGTTTCAATGCCTTTACTTT
TACACCCGTTGGTTTCAAATTTCATAGTAGTCGACGATGGTTGTTAATAA
TGTCGAGGAAAAAGCATTTTCAAAAACGTCAACTCTGACTTATAGCTCTA
TTTCTGTTAGTTACGGTAGTCAAAATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig23941:311..838+

>mRNA_H-paniculata_contig23941.6479.1 ID=mRNA_H-paniculata_contig23941.6479.1|Name=mRNA_H-paniculata_contig23941.6479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig23941:311..838+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCACTGCCACTTTTTCCCATATTCTTTTTGCGAACGGCTGCTGAG
GCAGAATATATTGTACATAGTGCGGTTTCGCTTGGTTCAGTTGGTTAGCG
ATTTGACCAAAGGACTCCCAATAATTCGTGAGCTTCGTGGCACGCGCTAT
GTTGACGGAGTTGAAGAGTCAATAGGGGGGATGTGTACCCGCGTTATGCG
TGTTTTCTGTGTTTGTGTTGTTGTCGAGCATTCGACCACACACGTTCGAT
CACGTCGTTTCAATGCCTTTACTTTTACACCCGTTGGTTTCAAATTTCAT
AGTAGTCGACGATGGTTGTTAATAATGTCGAGGAAAAAGCATTTTCAAAA
ACGTCAACTCTGAATGGCGCACTGCCACTTTTTCCCATATTCTTTTTGCG
AACGGCTGCTGAGGCAGAATATATTGTACATAGTGCGGTTTCGCTTGGTT
CAGTTGGTTAGCGATTTGACCAAAGGACTCCCAATAATTCGTGAGCTTCG
TGGCACGCGCTATGTTGACGGAGTTGAAGAGTCAATAGGGGGGATGTGTA
CCCGCGTTATGCGTGTTTTCTGTGTTTGTGTTGTTGTCGAGCATTCGACC
ACACACGTTCGATCACGTCGTTTCAATGCCTTTACTTTTACACCCGTTGG
TTTCAAATTTCATAGTAGTCGACGATGGTTGTTAATAATGTCGAGGAAAA
AGCATTTTCAAAAACGTCAACTCTGA
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