mRNA_H-paniculata_contig23913.6467.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: D7FSD9_ECTSI (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSD9_ECTSI) HSP 1 Score: 295 bits (756), Expect = 5.660e-99 Identity = 147/166 (88.55%), Postives = 153/166 (92.17%), Query Frame = 1
Query: 1 QDPPMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEKCP 498
++P MLIGHGFDIHRLV GKELVIGGV IPYELGADAHSDGDVIYHSVVDAILG ALGLPDIGQLFPDNDP+WSGADSS+FMEEAYRRM+ RGFRVGNVDVTLILQKPKVMDIKP MR NIVRLL TSL RVNVKARTHEKVD+VGEGRAMACHVVVLLEK P
Sbjct: 7 EEPAMLIGHGFDIHRLVEGKELVIGGVNIPYELGADAHSDGDVIYHSVVDAILG----ALGLPDIGQLFPDNDPDWSGADSSIFMEEAYRRMDERGFRVGNVDVTLILQKPKVMDIKPLMRDNIVRLLRTSLGRVNVKARTHEKVDSVGEGRAMACHVVVLLEKVP 168
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A7S2XZX5_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZX5_9STRA) HSP 1 Score: 258 bits (660), Expect = 1.620e-83 Identity = 128/161 (79.50%), Postives = 139/161 (86.34%), Query Frame = 1
Query: 10 PMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEK 492
P L+GHGFDIHRL G LVIGGV IPYELGA+AHSDGDVIYHSVVDAILG AL LPDIGQLFPDNDP W GADSSVFMEEAYRRM+ G+ +GNVDVTLILQKPKV DIKP M+ NIVRLL T+ ++VNVKARTHEKVD+VGEGR+MACHVVVLL K
Sbjct: 70 PFLVGHGFDIHRLAPGLPLVIGGVTIPYELGAEAHSDGDVIYHSVVDAILG----ALTLPDIGQLFPDNDPRWKGADSSVFMEEAYRRMDEAGYTIGNVDVTLILQKPKVKDIKPAMKENIVRLLRTTPSQVNVKARTHEKVDSVGEGRSMACHVVVLLMK 226
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A7R9U3H3_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3H3_9STRA) HSP 1 Score: 255 bits (651), Expect = 1.680e-82 Identity = 123/166 (74.10%), Postives = 143/166 (86.14%), Query Frame = 1
Query: 1 QDPPMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEKCP 498
++P + IGHGFDIHR+ GK+LVIGGV I +ELG +AHSDGDVIYHSVVDAILG AL LPDIGQLFPDNDPEWSGADSS+FM+EAY+RM+ARG+R+GNVDVTLILQKPKV D KP M+ NIV LL T+ RVNVKARTHEKVD+VGE RA++CHVV +LE+ P
Sbjct: 42 EEPLLRIGHGFDIHRMAPGKKLVIGGVTIDFELGVEAHSDGDVIYHSVVDAILG----ALTLPDIGQLFPDNDPEWSGADSSIFMKEAYKRMDARGYRIGNVDVTLILQKPKVKDFKPLMKDNIVELLHTTPDRVNVKARTHEKVDSVGESRALSCHVVTILERKP 203
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A835Z8X8_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X8_9STRA) HSP 1 Score: 241 bits (616), Expect = 8.690e-78 Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = 1
Query: 10 PMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLL 486
P+ IGHG+DIHRL GK+LVIGGV IP+E GA+AHSDGDVIYHSVVDAILG AL +PDIGQLFPDNDP+WSG+DSS+FMEEAYRRM RG+ +GNVDVTLILQ+PKV DIKP M NI RLL RVNVKARTHE VD+VGE RAM CHVV+ L
Sbjct: 2 PVRIGHGYDIHRLAEGKKLVIGGVDIPFEKGAEAHSDGDVIYHSVVDAILG----ALCMPDIGQLFPDNDPQWSGSDSSIFMEEAYRRMAGRGYEIGNVDVTLILQRPKVRDIKPAMADNIARLLHAPPGRVNVKARTHELVDSVGESRAMECHVVLTL 156
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A7S2WW46_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW46_9STRA) HSP 1 Score: 242 bits (618), Expect = 2.990e-77 Identity = 119/163 (73.01%), Postives = 134/163 (82.21%), Query Frame = 1
Query: 4 DPPMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEK 492
+P + IGHG+DIHRL G LVIGGV I YELG +AHSDGDV++HSVVDAI G ALGLPDIGQ FPD DP W GA S VFMEEAY +M ARG+ +GNVDVTLILQKPKVMDIKP+M+ NIVRLL TS +RVNVKARTHEKVD+VGE RA+ CHVV+ LEK
Sbjct: 60 EPLLRIGHGYDIHRLAPGLPLVIGGVDIDYELGTEAHSDGDVVFHSVVDAIFG----ALGLPDIGQFFPDTDPRWKGASSDVFMEEAYNQMVARGYHIGNVDVTLILQKPKVMDIKPKMKDNIVRLLRTSESRVNVKARTHEKVDSVGECRALECHVVLTLEK 218
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A7S0SRS3_9STRA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRS3_9STRA) HSP 1 Score: 241 bits (616), Expect = 3.540e-77 Identity = 115/163 (70.55%), Postives = 134/163 (82.21%), Query Frame = 1
Query: 4 DPPMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEK 492
+P + IGHGFDIHRL+ G +LVIGGV IPY LGADAHSDGD +YH VVDAILG AL LPDIGQ+FPDNDP+W GADSS+FM EAY RM RG+R+ N+DVTLILQ PKV DIKP M+ NIV+LL T+ RVN+KARTHEKVD++GE ++ ACH VVLLEK
Sbjct: 44 EPSIRIGHGFDIHRLIEGTKLVIGGVTIPYHLGADAHSDGDALYHCVVDAILG----ALNLPDIGQIFPDNDPKWKGADSSIFMIEAYNRMIERGYRISNLDVTLILQSPKVKDIKPSMKENIVKLLHTADNRVNIKARTHEKVDSIGESKSYACHAVVLLEK 202
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: K8YUB0_NANGC (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YUB0_NANGC) HSP 1 Score: 236 bits (603), Expect = 1.110e-74 Identity = 116/163 (71.17%), Postives = 131/163 (80.37%), Query Frame = 1
Query: 4 DPPMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEK 492
DPP IGHGFDIHRL AG LVIGGVKI +E G+ AHSDGD +YHSV DAILG A+GLPDIGQLFPD DP+W GADS+ FM EA R M RG+R+GNVDVTLILQKPKV DIKPQM+AN+V LL T +RVN+KARTHE VD+VGE R+ HVV+LLEK
Sbjct: 82 DPPFRIGHGFDIHRLEAGLPLVIGGVKIEFEKGSAAHSDGDALYHSVTDAILG----AIGLPDIGQLFPDTDPKWKGADSAQFMREARRLMTLRGYRIGNVDVTLILQKPKVKDIKPQMKANLVELLGTEESRVNIKARTHEHVDSVGESRSWVVHVVILLEK 240
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A7S0GXU7_9EUKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GXU7_9EUKA) HSP 1 Score: 233 bits (595), Expect = 8.840e-74 Identity = 113/163 (69.33%), Postives = 133/163 (81.60%), Query Frame = 1
Query: 4 DPPMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEK 492
+P M IGHG+DIHRL G L IGGV IP+E G AHSDGDV+YHS+ DAILG A+G+PDIGQLFPDNDP+W GA S FM EAYR M+ RG+++GNVDVTLILQKPKV DIKP+M+ NIV+LL+T +RVN+KARTHE VD+VGE RA+ACH VVLLEK
Sbjct: 60 EPAMRIGHGWDIHRLEDGLTLTIGGVVIPFEKGTVAHSDGDVLYHSLTDAILG----AIGMPDIGQLFPDNDPQWKGAASHQFMTEAYRLMKERGYQIGNVDVTLILQKPKVKDIKPEMKENIVKLLNTDASRVNIKARTHENVDSVGEVRALACHSVVLLEK 218
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A6V3M8V7_9EUKA (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3M8V7_9EUKA) HSP 1 Score: 227 bits (579), Expect = 9.280e-71 Identity = 111/166 (66.87%), Postives = 133/166 (80.12%), Query Frame = 1
Query: 1 QDPPMLIGHGFDIHRLV--AGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEK 492
Q+PP+ IGHG+DIHRL +G L IGGV IP+E G AHSDGDV+YHS+ DAILG A+G+PDIGQLFPD DP W GA S VF+ E++R M RG+R+GNVD+TLILQKPKV DIKP+M NIV+LL T +RVN+KARTHEKVD+VGE RA+ACH VVLLE+
Sbjct: 100 QEPPLRIGHGWDIHRLEEDSGAPLTIGGVVIPFEKGIVAHSDGDVLYHSLTDAILG----AIGMPDIGQLFPDTDPRWKGAASHVFLTESHRLMTERGYRIGNVDITLILQKPKVKDIKPEMAENIVKLLHTHPSRVNIKARTHEKVDSVGEVRALACHAVVLLER 261
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Match: A0A0G4H9P7_9ALVE (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H9P7_9ALVE) HSP 1 Score: 223 bits (567), Expect = 1.800e-69 Identity = 106/166 (63.86%), Postives = 126/166 (75.90%), Query Frame = 1
Query: 1 QDPPMLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGKWPCALGLPDIGQLFPDNDPEWSGADSSVFMEEAYRRMEARGFRVGNVDVTLILQKPKVMDIKPQMRANIVRLLDTSLARVNVKARTHEKVDAVGEGRAMACHVVVLLEKCP 498
+DP +GHG+DIHRL G L IGG+ IPYE G +AHSDGDV++HS+ DAI G AL LPDIGQ FPD DP W GA S VFMEEA+R+M+ RG+R+GN DVTLIL++PKV D KP+M I LL +RVNVKARTHEKVD+VGE RA+ CHVVV+LEK P
Sbjct: 63 EDPQFRVGHGYDIHRLAPGLTLTIGGIDIPYEKGTEAHSDGDVVFHSLCDAIFG----ALSLPDIGQQFPDTDPRWKGAASCVFMEEAFRQMDERGYRIGNADVTLILERPKVKDFKPKMVDRICELLRAPHSRVNVKARTHEKVDSVGESRALECHVVVVLEKKP 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23913.6467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23913.6467.1 >prot_H-paniculata_contig23913.6467.1 ID=prot_H-paniculata_contig23913.6467.1|Name=mRNA_H-paniculata_contig23913.6467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=164bp MLIGHGFDIHRLVAGKELVIGGVKIPYELGADAHSDGDVIYHSVVDAILGback to top mRNA from alignment at H-paniculata_contig23913:300..2701- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23913.6467.1 ID=mRNA_H-paniculata_contig23913.6467.1|Name=mRNA_H-paniculata_contig23913.6467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2402bp|location=Sequence derived from alignment at H-paniculata_contig23913:300..2701- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23913:300..2701- >mRNA_H-paniculata_contig23913.6467.1 ID=mRNA_H-paniculata_contig23913.6467.1|Name=mRNA_H-paniculata_contig23913.6467.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at H-paniculata_contig23913:300..2701- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |